PDB Short entry for 3PF6 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-OCT-10 3PF6 TITLE THE STRUCTURE OF UNCHARACTERIZED PROTEIN PP-LUZ7_GP033 FROM TITLE 2 PSEUDOMONAS PHAGE LUZ7. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PP-LUZ7_GP033; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE LUZ7; SOURCE 3 ORGANISM_TAXID: 655097; SOURCE 4 GENE: PP-LUZ7_GP033; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MODIFIED BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, DSDNA VIRUSES, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,E.EVDOKIMOVA,F.LIU,A.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 08-NOV-17 3PF6 1 REMARK REVDAT 1 10-NOV-10 3PF6 0 JRNL AUTH M.E.CUFF,E.EVDOKIMOVA,F.LIU,A.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE STRUCTURE OF UNCHARACTERIZED PROTEIN PP-LUZ7_GP033 FROM JRNL TITL 2 PSEUDOMONAS PHAGE LUZ7. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 27737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1409 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1849 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1460 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.1620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.50000 REMARK 3 B23 (A**2) : 1.39000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.670 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1941 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1308 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2637 ; 1.333 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3188 ; 0.876 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.061 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;27.424 ;23.187 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;13.576 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;26.904 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2188 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 401 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1196 ; 0.827 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 469 ; 0.243 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1933 ; 1.496 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 745 ; 2.364 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 704 ; 3.861 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0537 31.0589 26.1147 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0129 REMARK 3 T33: 0.0181 T12: 0.0039 REMARK 3 T13: -0.0005 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.0171 L22: 1.1618 REMARK 3 L33: 1.4130 L12: -0.0123 REMARK 3 L13: -0.0042 L23: -0.5754 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.0338 S13: -0.0262 REMARK 3 S21: 0.0081 S22: -0.0299 S23: -0.0449 REMARK 3 S31: 0.0014 S32: 0.0128 S33: 0.0427 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4248 39.6943 2.2479 REMARK 3 T TENSOR REMARK 3 T11: 0.0114 T22: 0.0121 REMARK 3 T33: 0.0174 T12: 0.0029 REMARK 3 T13: -0.0051 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.0209 L22: 0.7329 REMARK 3 L33: 1.8596 L12: 0.0154 REMARK 3 L13: -0.0914 L23: -0.4074 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: -0.0186 S13: -0.0234 REMARK 3 S21: -0.0040 S22: 0.0261 S23: -0.0142 REMARK 3 S31: 0.0266 S32: -0.0973 S33: -0.0114 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -10 C 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2371 39.5638 1.2957 REMARK 3 T TENSOR REMARK 3 T11: 0.0144 T22: 0.0165 REMARK 3 T33: 0.0138 T12: 0.0051 REMARK 3 T13: -0.0042 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.9137 L22: 1.1971 REMARK 3 L33: 1.6813 L12: 0.5149 REMARK 3 L13: -0.0525 L23: -0.3662 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.0440 S13: -0.0212 REMARK 3 S21: 0.0302 S22: 0.0098 S23: 0.0510 REMARK 3 S31: 0.0108 S32: -0.1071 S33: -0.0138 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -10 D 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2274 31.8316 25.6473 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.0113 REMARK 3 T33: 0.0202 T12: 0.0045 REMARK 3 T13: 0.0007 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.9776 L22: 1.1938 REMARK 3 L33: 1.5983 L12: 0.4716 REMARK 3 L13: 0.3656 L23: -0.4200 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.0398 S13: -0.0476 REMARK 3 S21: 0.0131 S22: -0.0297 S23: -0.0951 REMARK 3 S31: 0.0349 S32: 0.0813 S33: 0.0124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3PF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27869 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.24500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.1, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1M TRI-SODIUM CITRATE PH REMARK 280 5.7, 29% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 CYS B 59 REMARK 465 GLY B 60 REMARK 465 SER B 61 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 GLN C 58 REMARK 465 CYS C 59 REMARK 465 GLY C 60 REMARK 465 SER C 61 REMARK 465 GLY D 0 REMARK 465 MSE D 1 REMARK 465 SER D 2 REMARK 465 GLN D 58 REMARK 465 CYS D 59 REMARK 465 GLY D 60 REMARK 465 SER D 61 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 GLN C 3 CG CD OE1 NE2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 GLU D 57 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 20 OD2 ASP A 23 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 62 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 63 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 62 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 63 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 62 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC41716.0 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AT THIS POSITION, THE ELECTRON DENSITY IN ALL CASES WAS CLEARLY REMARK 999 PHE. IT WAS NOT ENGINEERED ON PURPOSE. DBREF 3PF6 A 1 59 UNP C8ZKC7 C8ZKC7_9CAUD 1 59 DBREF 3PF6 B 1 59 UNP C8ZKC7 C8ZKC7_9CAUD 1 59 DBREF 3PF6 C 1 59 UNP C8ZKC7 C8ZKC7_9CAUD 1 59 DBREF 3PF6 D 1 59 UNP C8ZKC7 C8ZKC7_9CAUD 1 59 SEQADV 3PF6 GLY A 0 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 PHE A 32 UNP C8ZKC7 LEU 32 SEE REMARK 999 SEQADV 3PF6 GLY A 60 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 SER A 61 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 GLY B 0 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 PHE B 32 UNP C8ZKC7 LEU 32 SEE REMARK 999 SEQADV 3PF6 GLY B 60 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 SER B 61 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 GLY C 0 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 PHE C 32 UNP C8ZKC7 LEU 32 SEE REMARK 999 SEQADV 3PF6 GLY C 60 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 SER C 61 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 GLY D 0 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 PHE D 32 UNP C8ZKC7 LEU 32 SEE REMARK 999 SEQADV 3PF6 GLY D 60 UNP C8ZKC7 EXPRESSION TAG SEQADV 3PF6 SER D 61 UNP C8ZKC7 EXPRESSION TAG SEQRES 1 A 62 GLY MSE SER GLN PHE GLN GLU VAL ARG PRO VAL ALA GLN SEQRES 2 A 62 ALA LEU TYR PRO THR HIS PRO SER THR LYS ASP ALA LEU SEQRES 3 A 62 GLU GLU ALA ARG LEU LEU PHE PRO GLY GLY THR HIS HIS SEQRES 4 A 62 ASP PHE MSE ARG ALA LEU MSE GLY TYR HIS ASN THR LEU SEQRES 5 A 62 VAL LYS VAL MSE GLU GLU GLN CYS GLY SER SEQRES 1 B 62 GLY MSE SER GLN PHE GLN GLU VAL ARG PRO VAL ALA GLN SEQRES 2 B 62 ALA LEU TYR PRO THR HIS PRO SER THR LYS ASP ALA LEU SEQRES 3 B 62 GLU GLU ALA ARG LEU LEU PHE PRO GLY GLY THR HIS HIS SEQRES 4 B 62 ASP PHE MSE ARG ALA LEU MSE GLY TYR HIS ASN THR LEU SEQRES 5 B 62 VAL LYS VAL MSE GLU GLU GLN CYS GLY SER SEQRES 1 C 62 GLY MSE SER GLN PHE GLN GLU VAL ARG PRO VAL ALA GLN SEQRES 2 C 62 ALA LEU TYR PRO THR HIS PRO SER THR LYS ASP ALA LEU SEQRES 3 C 62 GLU GLU ALA ARG LEU LEU PHE PRO GLY GLY THR HIS HIS SEQRES 4 C 62 ASP PHE MSE ARG ALA LEU MSE GLY TYR HIS ASN THR LEU SEQRES 5 C 62 VAL LYS VAL MSE GLU GLU GLN CYS GLY SER SEQRES 1 D 62 GLY MSE SER GLN PHE GLN GLU VAL ARG PRO VAL ALA GLN SEQRES 2 D 62 ALA LEU TYR PRO THR HIS PRO SER THR LYS ASP ALA LEU SEQRES 3 D 62 GLU GLU ALA ARG LEU LEU PHE PRO GLY GLY THR HIS HIS SEQRES 4 D 62 ASP PHE MSE ARG ALA LEU MSE GLY TYR HIS ASN THR LEU SEQRES 5 D 62 VAL LYS VAL MSE GLU GLU GLN CYS GLY SER MODRES 3PF6 MSE A 1 MET SELENOMETHIONINE MODRES 3PF6 MSE A 41 MET SELENOMETHIONINE MODRES 3PF6 MSE A 45 MET SELENOMETHIONINE MODRES 3PF6 MSE A 55 MET SELENOMETHIONINE MODRES 3PF6 MSE B 1 MET SELENOMETHIONINE MODRES 3PF6 MSE B 41 MET SELENOMETHIONINE MODRES 3PF6 MSE B 45 MET SELENOMETHIONINE MODRES 3PF6 MSE B 55 MET SELENOMETHIONINE MODRES 3PF6 MSE C 41 MET SELENOMETHIONINE MODRES 3PF6 MSE C 45 MET SELENOMETHIONINE MODRES 3PF6 MSE C 55 MET SELENOMETHIONINE MODRES 3PF6 MSE D 41 MET SELENOMETHIONINE MODRES 3PF6 MSE D 45 MET SELENOMETHIONINE MODRES 3PF6 MSE D 55 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 41 8 HET MSE A 45 8 HET MSE A 55 16 HET MSE B 1 8 HET MSE B 41 8 HET MSE B 45 8 HET MSE B 55 16 HET MSE C 41 8 HET MSE C 45 8 HET MSE C 55 16 HET MSE D 41 8 HET MSE D 45 8 HET MSE D 55 16 HET CL B 62 1 HET CL C 62 1 HET CL C 63 1 HET CL D 62 1 HET CL D 63 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 5 CL 5(CL 1-) FORMUL 10 HOH *361(H2 O) HELIX 1 1 SER A 20 PHE A 32 1 13 HELIX 2 2 THR A 36 GLN A 58 1 23 HELIX 3 3 SER B 20 PHE B 32 1 13 HELIX 4 4 THR B 36 GLN B 58 1 23 HELIX 5 5 SER C 20 PHE C 32 1 13 HELIX 6 6 THR C 36 GLU C 57 1 22 HELIX 7 7 SER D 20 PHE D 32 1 13 HELIX 8 8 THR D 36 GLU D 57 1 22 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.32 LINK C PHE A 40 N MSE A 41 1555 1555 1.34 LINK C MSE A 41 N ARG A 42 1555 1555 1.33 LINK C LEU A 44 N MSE A 45 1555 1555 1.34 LINK C MSE A 45 N GLY A 46 1555 1555 1.33 LINK C VAL A 54 N AMSE A 55 1555 1555 1.33 LINK C VAL A 54 N BMSE A 55 1555 1555 1.32 LINK C AMSE A 55 N GLU A 56 1555 1555 1.33 LINK C BMSE A 55 N GLU A 56 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C PHE B 40 N MSE B 41 1555 1555 1.33 LINK C MSE B 41 N ARG B 42 1555 1555 1.33 LINK C LEU B 44 N MSE B 45 1555 1555 1.34 LINK C MSE B 45 N GLY B 46 1555 1555 1.33 LINK C VAL B 54 N AMSE B 55 1555 1555 1.33 LINK C VAL B 54 N BMSE B 55 1555 1555 1.33 LINK C AMSE B 55 N GLU B 56 1555 1555 1.33 LINK C BMSE B 55 N GLU B 56 1555 1555 1.33 LINK C PHE C 40 N MSE C 41 1555 1555 1.34 LINK C MSE C 41 N ARG C 42 1555 1555 1.33 LINK C LEU C 44 N MSE C 45 1555 1555 1.34 LINK C MSE C 45 N GLY C 46 1555 1555 1.33 LINK C VAL C 54 N AMSE C 55 1555 1555 1.32 LINK C VAL C 54 N BMSE C 55 1555 1555 1.33 LINK C AMSE C 55 N GLU C 56 1555 1555 1.33 LINK C BMSE C 55 N GLU C 56 1555 1555 1.33 LINK C PHE D 40 N MSE D 41 1555 1555 1.33 LINK C MSE D 41 N ARG D 42 1555 1555 1.33 LINK C LEU D 44 N MSE D 45 1555 1555 1.33 LINK C MSE D 45 N GLY D 46 1555 1555 1.34 LINK C VAL D 54 N AMSE D 55 1555 1555 1.32 LINK C VAL D 54 N BMSE D 55 1555 1555 1.33 LINK C AMSE D 55 N GLU D 56 1555 1555 1.33 LINK C BMSE D 55 N GLU D 56 1555 1555 1.33 SITE 1 AC1 4 GLN A 3 ARG D 29 HIS D 37 HOH D 75 SITE 1 AC2 4 GLY A 0 SER A 2 HOH A 153 LYS D 22 SITE 1 AC3 4 GLY B 0 SER B 2 HOH B 223 LYS C 22 SITE 1 AC4 4 GLN B 3 ARG C 29 HIS C 37 HOH C 64 SITE 1 AC5 2 ARG B 29 HIS B 37 CRYST1 31.886 40.822 46.268 70.14 84.61 83.86 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031362 -0.003372 -0.001950 0.00000 SCALE2 0.000000 0.024638 -0.008704 0.00000 SCALE3 0.000000 0.000000 0.023024 0.00000