PDB Short entry for 3PFF HEADER TRANSFERASE 28-OCT-10 3PFF TITLE TRUNCATED HUMAN ATP-CITRATE LYASE WITH ADP AND TARTRATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-CITRATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-817; COMPND 5 SYNONYM: ATP-CITRATE (PRO-S-)-LYASE, CITRATE CLEAVAGE ENZYME; COMPND 6 EC: 2.3.3.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACLY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET42B+ KEYWDS PHOSPHOHISTIDINE, ORGANIC ACID, ATP-GRASP, LYASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.FRASER,T.SUN REVDAT 4 06-SEP-23 3PFF 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3PFF 1 REMARK REVDAT 2 11-APR-12 3PFF 1 JRNL REVDAT 1 12-OCT-11 3PFF 0 JRNL AUTH T.SUN,K.HAYAKAWA,M.E.FRASER JRNL TITL ADP-MG2+ BOUND TO THE ATP-GRASP DOMAIN OF ATP-CITRATE LYASE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1168 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 22102020 JRNL DOI 10.1107/S1744309111028363 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 37841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9785 - 5.7916 0.99 2448 163 0.1748 0.2284 REMARK 3 2 5.7916 - 4.5985 0.99 2364 156 0.1510 0.2119 REMARK 3 3 4.5985 - 4.0177 0.99 2346 156 0.1379 0.1830 REMARK 3 4 4.0177 - 3.6506 0.99 2348 152 0.1465 0.2015 REMARK 3 5 3.6506 - 3.3890 0.98 2308 155 0.1547 0.2003 REMARK 3 6 3.3890 - 3.1893 0.98 2314 148 0.1622 0.2206 REMARK 3 7 3.1893 - 3.0296 0.97 2281 155 0.1632 0.2341 REMARK 3 8 3.0296 - 2.8977 0.97 2263 155 0.1686 0.2316 REMARK 3 9 2.8977 - 2.7862 0.95 2236 135 0.1827 0.2678 REMARK 3 10 2.7862 - 2.6901 0.95 2230 159 0.1826 0.2470 REMARK 3 11 2.6901 - 2.6060 0.93 2174 147 0.1910 0.2670 REMARK 3 12 2.6060 - 2.5315 0.91 2117 145 0.1995 0.2840 REMARK 3 13 2.5315 - 2.4648 0.91 2142 132 0.2044 0.2822 REMARK 3 14 2.4648 - 2.4047 0.89 2109 106 0.2138 0.2891 REMARK 3 15 2.4047 - 2.3500 0.90 2107 107 0.2208 0.3119 REMARK 3 16 2.3500 - 2.3000 0.75 1798 85 0.2120 0.2554 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 40.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.78380 REMARK 3 B22 (A**2) : 2.73860 REMARK 3 B33 (A**2) : 8.04520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.06850 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5855 REMARK 3 ANGLE : 1.063 7935 REMARK 3 CHIRALITY : 0.068 890 REMARK 3 PLANARITY : 0.004 1012 REMARK 3 DIHEDRAL : 13.138 2150 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39343 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRIES: 3MWD, 3MWE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% POLYETHYLENE GLYCOL 3350, 125 MM REMARK 280 SODIUM TARTRATE, 100 MM TRIS-HCL, PH 7, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.77000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.77000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 104.88173 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.94101 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1164 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1216 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 426 REMARK 465 GLN A 427 REMARK 465 PRO A 428 REMARK 465 PRO A 429 REMARK 465 THR A 430 REMARK 465 ALA A 431 REMARK 465 ALA A 432 REMARK 465 HIS A 433 REMARK 465 THR A 434 REMARK 465 ALA A 435 REMARK 465 ASN A 436 REMARK 465 PHE A 437 REMARK 465 LEU A 438 REMARK 465 LEU A 439 REMARK 465 ASN A 440 REMARK 465 ALA A 441 REMARK 465 SER A 442 REMARK 465 GLY A 443 REMARK 465 SER A 444 REMARK 465 THR A 445 REMARK 465 SER A 446 REMARK 465 THR A 447 REMARK 465 PRO A 448 REMARK 465 ALA A 449 REMARK 465 PRO A 450 REMARK 465 SER A 451 REMARK 465 ARG A 452 REMARK 465 THR A 453 REMARK 465 ALA A 454 REMARK 465 SER A 455 REMARK 465 PHE A 456 REMARK 465 SER A 457 REMARK 465 GLU A 458 REMARK 465 SER A 459 REMARK 465 ARG A 460 REMARK 465 ALA A 461 REMARK 465 ASP A 462 REMARK 465 GLU A 463 REMARK 465 VAL A 464 REMARK 465 ALA A 465 REMARK 465 PRO A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 LYS A 469 REMARK 465 ALA A 470 REMARK 465 LYS A 471 REMARK 465 PRO A 472 REMARK 465 ALA A 473 REMARK 465 MET A 474 REMARK 465 PRO A 475 REMARK 465 GLN A 476 REMARK 465 ASP A 477 REMARK 465 SER A 478 REMARK 465 VAL A 479 REMARK 465 PRO A 480 REMARK 465 SER A 481 REMARK 465 PRO A 482 REMARK 465 ARG A 483 REMARK 465 SER A 484 REMARK 465 LEU A 485 REMARK 465 GLN A 486 REMARK 465 PHE A 752 REMARK 465 SER A 753 REMARK 465 SER A 754 REMARK 465 GLU A 755 REMARK 465 VAL A 756 REMARK 465 GLN A 757 REMARK 465 PHE A 758 REMARK 465 GLY A 759 REMARK 465 HIS A 760 REMARK 465 ALA A 761 REMARK 465 GLY A 762 REMARK 465 ALA A 763 REMARK 465 CYS A 764 REMARK 465 ALA A 765 REMARK 465 ASN A 766 REMARK 465 ALA A 813 REMARK 465 GLN A 814 REMARK 465 GLU A 815 REMARK 465 VAL A 816 REMARK 465 PRO A 817 REMARK 465 ALA A 818 REMARK 465 ALA A 819 REMARK 465 LEU A 820 REMARK 465 GLU A 821 REMARK 465 HIS A 822 REMARK 465 HIS A 823 REMARK 465 HIS A 824 REMARK 465 HIS A 825 REMARK 465 HIS A 826 REMARK 465 HIS A 827 REMARK 465 HIS A 828 REMARK 465 HIS A 829 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1174 O HOH A 1180 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 61 26.93 -145.35 REMARK 500 HIS A 168 -58.63 -126.37 REMARK 500 THR A 208 -167.91 -107.24 REMARK 500 LYS A 259 42.25 -97.66 REMARK 500 PHE A 347 -18.79 -141.95 REMARK 500 HIS A 537 -173.22 -171.80 REMARK 500 PRO A 631 139.82 -39.69 REMARK 500 PHE A 634 142.09 -170.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 831 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 203 O REMARK 620 2 ASP A 216 OD2 96.6 REMARK 620 3 ADP A 833 O1A 101.6 97.9 REMARK 620 4 ADP A 833 O2B 166.5 93.9 85.4 REMARK 620 5 HOH A1144 O 83.0 178.6 83.4 86.3 REMARK 620 6 HOH A1168 O 88.1 92.2 165.0 82.9 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 830 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 257 OD1 REMARK 620 2 ASP A 257 O 67.1 REMARK 620 3 SER A 260 O 129.3 71.2 REMARK 620 4 ALA A 262 O 76.5 95.7 80.4 REMARK 620 5 HOH A1104 O 113.8 144.3 116.9 119.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 830 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 831 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 832 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 833 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MWD RELATED DB: PDB REMARK 900 TRUNCATED HUMAN ATP-CITRATE LYASE WITH CITRATE BOUND REMARK 900 RELATED ID: 3MWE RELATED DB: PDB REMARK 900 TRUNCATED HUMAN ATP-CITRATE LYASE WITH TARTRATE BOUND DBREF 3PFF A 1 817 UNP P53396 ACLY_HUMAN 1 817 SEQADV 3PFF ALA A 818 UNP P53396 EXPRESSION TAG SEQADV 3PFF ALA A 819 UNP P53396 EXPRESSION TAG SEQADV 3PFF LEU A 820 UNP P53396 EXPRESSION TAG SEQADV 3PFF GLU A 821 UNP P53396 EXPRESSION TAG SEQADV 3PFF HIS A 822 UNP P53396 EXPRESSION TAG SEQADV 3PFF HIS A 823 UNP P53396 EXPRESSION TAG SEQADV 3PFF HIS A 824 UNP P53396 EXPRESSION TAG SEQADV 3PFF HIS A 825 UNP P53396 EXPRESSION TAG SEQADV 3PFF HIS A 826 UNP P53396 EXPRESSION TAG SEQADV 3PFF HIS A 827 UNP P53396 EXPRESSION TAG SEQADV 3PFF HIS A 828 UNP P53396 EXPRESSION TAG SEQADV 3PFF HIS A 829 UNP P53396 EXPRESSION TAG SEQRES 1 A 829 MET SER ALA LYS ALA ILE SER GLU GLN THR GLY LYS GLU SEQRES 2 A 829 LEU LEU TYR LYS PHE ILE CYS THR THR SER ALA ILE GLN SEQRES 3 A 829 ASN ARG PHE LYS TYR ALA ARG VAL THR PRO ASP THR ASP SEQRES 4 A 829 TRP ALA ARG LEU LEU GLN ASP HIS PRO TRP LEU LEU SER SEQRES 5 A 829 GLN ASN LEU VAL VAL LYS PRO ASP GLN LEU ILE LYS ARG SEQRES 6 A 829 ARG GLY LYS LEU GLY LEU VAL GLY VAL ASN LEU THR LEU SEQRES 7 A 829 ASP GLY VAL LYS SER TRP LEU LYS PRO ARG LEU GLY GLN SEQRES 8 A 829 GLU ALA THR VAL GLY LYS ALA THR GLY PHE LEU LYS ASN SEQRES 9 A 829 PHE LEU ILE GLU PRO PHE VAL PRO HIS SER GLN ALA GLU SEQRES 10 A 829 GLU PHE TYR VAL CYS ILE TYR ALA THR ARG GLU GLY ASP SEQRES 11 A 829 TYR VAL LEU PHE HIS HIS GLU GLY GLY VAL ASP VAL GLY SEQRES 12 A 829 ASP VAL ASP ALA LYS ALA GLN LYS LEU LEU VAL GLY VAL SEQRES 13 A 829 ASP GLU LYS LEU ASN PRO GLU ASP ILE LYS LYS HIS LEU SEQRES 14 A 829 LEU VAL HIS ALA PRO GLU ASP LYS LYS GLU ILE LEU ALA SEQRES 15 A 829 SER PHE ILE SER GLY LEU PHE ASN PHE TYR GLU ASP LEU SEQRES 16 A 829 TYR PHE THR TYR LEU GLU ILE ASN PRO LEU VAL VAL THR SEQRES 17 A 829 LYS ASP GLY VAL TYR VAL LEU ASP LEU ALA ALA LYS VAL SEQRES 18 A 829 ASP ALA THR ALA ASP TYR ILE CYS LYS VAL LYS TRP GLY SEQRES 19 A 829 ASP ILE GLU PHE PRO PRO PRO PHE GLY ARG GLU ALA TYR SEQRES 20 A 829 PRO GLU GLU ALA TYR ILE ALA ASP LEU ASP ALA LYS SER SEQRES 21 A 829 GLY ALA SER LEU LYS LEU THR LEU LEU ASN PRO LYS GLY SEQRES 22 A 829 ARG ILE TRP THR MET VAL ALA GLY GLY GLY ALA SER VAL SEQRES 23 A 829 VAL TYR SER ASP THR ILE CYS ASP LEU GLY GLY VAL ASN SEQRES 24 A 829 GLU LEU ALA ASN TYR GLY GLU TYR SER GLY ALA PRO SER SEQRES 25 A 829 GLU GLN GLN THR TYR ASP TYR ALA LYS THR ILE LEU SER SEQRES 26 A 829 LEU MET THR ARG GLU LYS HIS PRO ASP GLY LYS ILE LEU SEQRES 27 A 829 ILE ILE GLY GLY SER ILE ALA ASN PHE THR ASN VAL ALA SEQRES 28 A 829 ALA THR PHE LYS GLY ILE VAL ARG ALA ILE ARG ASP TYR SEQRES 29 A 829 GLN GLY PRO LEU LYS GLU HIS GLU VAL THR ILE PHE VAL SEQRES 30 A 829 ARG ARG GLY GLY PRO ASN TYR GLN GLU GLY LEU ARG VAL SEQRES 31 A 829 MET GLY GLU VAL GLY LYS THR THR GLY ILE PRO ILE HIS SEQRES 32 A 829 VAL PHE GLY THR GLU THR HIS MET THR ALA ILE VAL GLY SEQRES 33 A 829 MET ALA LEU GLY HIS ARG PRO ILE PRO ASN GLN PRO PRO SEQRES 34 A 829 THR ALA ALA HIS THR ALA ASN PHE LEU LEU ASN ALA SER SEQRES 35 A 829 GLY SER THR SER THR PRO ALA PRO SER ARG THR ALA SER SEQRES 36 A 829 PHE SER GLU SER ARG ALA ASP GLU VAL ALA PRO ALA LYS SEQRES 37 A 829 LYS ALA LYS PRO ALA MET PRO GLN ASP SER VAL PRO SER SEQRES 38 A 829 PRO ARG SER LEU GLN GLY LYS SER THR THR LEU PHE SER SEQRES 39 A 829 ARG HIS THR LYS ALA ILE VAL TRP GLY MET GLN THR ARG SEQRES 40 A 829 ALA VAL GLN GLY MET LEU ASP PHE ASP TYR VAL CYS SER SEQRES 41 A 829 ARG ASP GLU PRO SER VAL ALA ALA MET VAL TYR PRO PHE SEQRES 42 A 829 THR GLY ASP HIS LYS GLN LYS PHE TYR TRP GLY HIS LYS SEQRES 43 A 829 GLU ILE LEU ILE PRO VAL PHE LYS ASN MET ALA ASP ALA SEQRES 44 A 829 MET ARG LYS HIS PRO GLU VAL ASP VAL LEU ILE ASN PHE SEQRES 45 A 829 ALA SER LEU ARG SER ALA TYR ASP SER THR MET GLU THR SEQRES 46 A 829 MET ASN TYR ALA GLN ILE ARG THR ILE ALA ILE ILE ALA SEQRES 47 A 829 GLU GLY ILE PRO GLU ALA LEU THR ARG LYS LEU ILE LYS SEQRES 48 A 829 LYS ALA ASP GLN LYS GLY VAL THR ILE ILE GLY PRO ALA SEQRES 49 A 829 THR VAL GLY GLY ILE LYS PRO GLY CYS PHE LYS ILE GLY SEQRES 50 A 829 ASN THR GLY GLY MET LEU ASP ASN ILE LEU ALA SER LYS SEQRES 51 A 829 LEU TYR ARG PRO GLY SER VAL ALA TYR VAL SER ARG SER SEQRES 52 A 829 GLY GLY MET SER ASN GLU LEU ASN ASN ILE ILE SER ARG SEQRES 53 A 829 THR THR ASP GLY VAL TYR GLU GLY VAL ALA ILE GLY GLY SEQRES 54 A 829 ASP ARG TYR PRO GLY SER THR PHE MET ASP HIS VAL LEU SEQRES 55 A 829 ARG TYR GLN ASP THR PRO GLY VAL LYS MET ILE VAL VAL SEQRES 56 A 829 LEU GLY GLU ILE GLY GLY THR GLU GLU TYR LYS ILE CYS SEQRES 57 A 829 ARG GLY ILE LYS GLU GLY ARG LEU THR LYS PRO ILE VAL SEQRES 58 A 829 CYS TRP CYS ILE GLY THR CYS ALA THR MET PHE SER SER SEQRES 59 A 829 GLU VAL GLN PHE GLY HIS ALA GLY ALA CYS ALA ASN GLN SEQRES 60 A 829 ALA SER GLU THR ALA VAL ALA LYS ASN GLN ALA LEU LYS SEQRES 61 A 829 GLU ALA GLY VAL PHE VAL PRO ARG SER PHE ASP GLU LEU SEQRES 62 A 829 GLY GLU ILE ILE GLN SER VAL TYR GLU ASP LEU VAL ALA SEQRES 63 A 829 ASN GLY VAL ILE VAL PRO ALA GLN GLU VAL PRO ALA ALA SEQRES 64 A 829 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS HET MG A 830 1 HET MG A 831 1 HET TLA A 832 10 HET ADP A 833 27 HETNAM MG MAGNESIUM ION HETNAM TLA L(+)-TARTARIC ACID HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 TLA C4 H6 O6 FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *389(H2 O) HELIX 1 1 SER A 7 ILE A 19 1 13 HELIX 2 2 ASP A 39 HIS A 47 1 9 HELIX 3 3 PRO A 48 GLN A 53 1 6 HELIX 4 4 THR A 77 LYS A 86 1 10 HELIX 5 5 SER A 114 ALA A 116 5 3 HELIX 6 6 ASP A 144 ALA A 149 1 6 HELIX 7 7 ASN A 161 HIS A 168 1 8 HELIX 8 8 PRO A 174 ASP A 176 5 3 HELIX 9 9 LYS A 177 LEU A 195 1 19 HELIX 10 10 ALA A 225 GLY A 234 1 10 HELIX 11 11 TYR A 247 LYS A 259 1 13 HELIX 12 12 GLY A 281 LEU A 295 1 15 HELIX 13 13 SER A 312 MET A 327 1 16 HELIX 14 14 ASN A 349 HIS A 371 1 23 HELIX 15 15 ASN A 383 GLY A 399 1 17 HELIX 16 16 THR A 412 LEU A 419 1 8 HELIX 17 17 GLN A 505 CYS A 519 1 15 HELIX 18 18 ASN A 555 HIS A 563 1 9 HELIX 19 19 SER A 577 MET A 586 1 10 HELIX 20 20 PRO A 602 GLY A 617 1 16 HELIX 21 21 MET A 642 SER A 649 1 8 HELIX 22 22 SER A 663 THR A 678 1 16 HELIX 23 23 THR A 696 ASP A 706 1 11 HELIX 24 24 THR A 722 GLU A 733 1 12 HELIX 25 25 GLN A 767 GLU A 770 5 4 HELIX 26 26 THR A 771 ALA A 782 1 12 HELIX 27 27 SER A 789 ASP A 791 5 3 HELIX 28 28 GLU A 792 ASN A 807 1 16 SHEET 1 A 6 ALA A 3 ILE A 6 0 SHEET 2 A 6 ALA A 218 ASP A 222 -1 O VAL A 221 N LYS A 4 SHEET 3 A 6 PHE A 197 THR A 208 -1 N GLU A 201 O ALA A 218 SHEET 4 A 6 GLU A 118 THR A 126 -1 N ALA A 125 O THR A 198 SHEET 5 A 6 GLY A 129 HIS A 135 -1 O LEU A 133 N CYS A 122 SHEET 6 A 6 GLN A 150 GLY A 155 -1 O VAL A 154 N ASP A 130 SHEET 1 B 4 ALA A 3 ILE A 6 0 SHEET 2 B 4 ALA A 218 ASP A 222 -1 O VAL A 221 N LYS A 4 SHEET 3 B 4 PHE A 197 THR A 208 -1 N GLU A 201 O ALA A 218 SHEET 4 B 4 GLY A 211 VAL A 214 -1 O TYR A 213 N VAL A 206 SHEET 1 C 4 ALA A 32 VAL A 34 0 SHEET 2 C 4 PHE A 105 PRO A 109 -1 O PHE A 105 N VAL A 34 SHEET 3 C 4 LEU A 55 PRO A 59 -1 N LYS A 58 O LEU A 106 SHEET 4 C 4 GLY A 73 LEU A 76 -1 O LEU A 76 N LEU A 55 SHEET 1 D 2 GLU A 92 VAL A 95 0 SHEET 2 D 2 ALA A 98 PHE A 101 -1 O ALA A 98 N VAL A 95 SHEET 1 E 2 SER A 263 LEU A 268 0 SHEET 2 E 2 ASN A 303 SER A 308 -1 O SER A 308 N SER A 263 SHEET 1 F 4 ILE A 275 THR A 277 0 SHEET 2 F 4 LYS A 336 ILE A 340 1 O ILE A 337 N TRP A 276 SHEET 3 F 4 VAL A 373 ARG A 378 1 O PHE A 376 N ILE A 340 SHEET 4 F 4 ILE A 402 PHE A 405 1 O HIS A 403 N ILE A 375 SHEET 1 G 7 HIS A 537 TRP A 543 0 SHEET 2 G 7 LYS A 546 PHE A 553 -1 O VAL A 552 N HIS A 537 SHEET 3 G 7 VAL A 526 VAL A 530 1 N MET A 529 O PHE A 553 SHEET 4 G 7 ALA A 499 TRP A 502 1 N ALA A 499 O ALA A 527 SHEET 5 G 7 VAL A 568 ASN A 571 1 O ILE A 570 N ILE A 500 SHEET 6 G 7 THR A 593 ILE A 596 1 O ALA A 595 N ASN A 571 SHEET 7 G 7 THR A 619 ILE A 621 1 O ILE A 621 N ILE A 594 SHEET 1 H 6 PHE A 634 LYS A 635 0 SHEET 2 H 6 GLY A 628 LYS A 630 -1 N LYS A 630 O PHE A 634 SHEET 3 H 6 VAL A 681 ALA A 686 -1 O GLY A 684 N ILE A 629 SHEET 4 H 6 VAL A 657 SER A 661 1 N VAL A 657 O TYR A 682 SHEET 5 H 6 MET A 712 GLU A 718 1 O VAL A 714 N ALA A 658 SHEET 6 H 6 ILE A 740 ILE A 745 1 O VAL A 741 N ILE A 713 SSBOND 1 CYS A 20 CYS A 20 1555 2656 1.94 SSBOND 2 CYS A 293 CYS A 748 1555 1555 2.05 LINK O ASN A 203 MG MG A 831 1555 1555 2.13 LINK OD2 ASP A 216 MG MG A 831 1555 1555 2.28 LINK OD1 ASP A 257 MG MG A 830 1555 1555 2.78 LINK O ASP A 257 MG MG A 830 1555 1555 2.84 LINK O SER A 260 MG MG A 830 1555 1555 2.67 LINK O ALA A 262 MG MG A 830 1555 1555 2.66 LINK MG MG A 830 O HOH A1104 1555 1555 2.75 LINK MG MG A 831 O1A ADP A 833 1555 1555 2.09 LINK MG MG A 831 O2B ADP A 833 1555 1555 2.18 LINK MG MG A 831 O HOH A1144 1555 1555 2.45 LINK MG MG A 831 O HOH A1168 1555 1555 2.32 CISPEP 1 ASN A 203 PRO A 204 0 4.90 CISPEP 2 GLY A 622 PRO A 623 0 5.62 SITE 1 AC1 4 ASP A 257 SER A 260 ALA A 262 HOH A1104 SITE 1 AC2 5 ASN A 203 ASP A 216 ADP A 833 HOH A1144 SITE 2 AC2 5 HOH A1168 SITE 1 AC3 9 GLY A 309 ALA A 310 ALA A 345 ASN A 346 SITE 2 AC3 9 PHE A 347 THR A 348 ARG A 379 GLY A 665 SITE 3 AC3 9 HOH A 998 SITE 1 AC4 24 VAL A 56 LYS A 58 ARG A 65 ARG A 66 SITE 2 AC4 24 GLY A 67 PRO A 109 PHE A 110 VAL A 111 SITE 3 AC4 24 HIS A 113 GLU A 118 VAL A 140 ASN A 203 SITE 4 AC4 24 PRO A 204 LEU A 215 ASP A 216 MG A 831 SITE 5 AC4 24 HOH A 899 HOH A1139 HOH A1140 HOH A1144 SITE 6 AC4 24 HOH A1155 HOH A1156 HOH A1168 HOH A1189 CRYST1 167.540 61.700 107.980 90.00 125.47 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005969 0.000000 0.004253 0.00000 SCALE2 0.000000 0.016207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011371 0.00000