PDB Short entry for 3PLZ HEADER TRANSCRIPTION/RECEPTOR/AGONIST 15-NOV-10 3PLZ TITLE HUMAN LRH1 LBD BOUND TO GR470 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FTZ-F1 RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 300-541; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: UNP RESIDUES 740-753; COMPND 10 SYNONYM: NCOA-2, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75, BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2, HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR5A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLRH1_LBD; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS ALPHA HELICAL SANDWHICH, NUCLEAR RECEPTOR, FAMILY FIVE, TRANSCRIPTION KEYWDS 2 FACTOR, CO-ACTIVATOR, TRANSCRIPTION-RECEPTOR-AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.P.WILLIAMS,R.XU,W.J.ZUERCHER REVDAT 4 21-FEB-24 3PLZ 1 REMARK SEQADV REVDAT 3 08-NOV-17 3PLZ 1 REMARK REVDAT 2 27-APR-11 3PLZ 1 JRNL REVDAT 1 30-MAR-11 3PLZ 0 JRNL AUTH R.J.WHITBY,J.STEC,R.D.BLIND,S.DIXON,L.M.LEESNITZER, JRNL AUTH 2 L.A.ORBAND-MILLER,S.P.WILLIAMS,T.M.WILLSON,R.XU, JRNL AUTH 3 W.J.ZUERCHER,F.CAI,H.A.INGRAHAM JRNL TITL SMALL MOLECULE AGONISTS OF THE ORPHAN NUCLEAR RECEPTORS JRNL TITL 2 STEROIDOGENIC FACTOR-1 (SF-1, NR5A1) AND LIVER RECEPTOR JRNL TITL 3 HOMOLOGUE-1 (LRH-1, NR5A2). JRNL REF J.MED.CHEM. V. 54 2266 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21391689 JRNL DOI 10.1021/JM1014296 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3906 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1825 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3923 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.91000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.294 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4119 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2682 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5581 ; 1.098 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6581 ; 0.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 4.239 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;40.596 ;24.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;11.818 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;11.031 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 643 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4559 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 797 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2489 ; 0.484 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 997 ; 0.099 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3992 ; 0.940 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1630 ; 1.533 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1582 ; 2.565 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 300 A 600 REMARK 3 RESIDUE RANGE : C 600 C 900 REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8590 -5.6720 -15.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0470 REMARK 3 T33: 0.0927 T12: -0.0012 REMARK 3 T13: 0.0543 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.2763 L22: 1.5177 REMARK 3 L33: 2.3654 L12: -0.1455 REMARK 3 L13: -0.9351 L23: 0.5726 REMARK 3 S TENSOR REMARK 3 S11: 0.1116 S12: -0.1622 S13: 0.1814 REMARK 3 S21: 0.0524 S22: -0.0141 S23: -0.1413 REMARK 3 S31: -0.0955 S32: 0.1459 S33: -0.0975 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 300 B 600 REMARK 3 RESIDUE RANGE : D 600 D 900 REMARK 3 RESIDUE RANGE : B 1 B 1 REMARK 3 ORIGIN FOR THE GROUP (A): -25.5840 -1.5910 -44.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0235 REMARK 3 T33: 0.0963 T12: 0.0036 REMARK 3 T13: 0.0740 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.3339 L22: 1.3703 REMARK 3 L33: 1.3662 L12: -0.5551 REMARK 3 L13: -1.0155 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: 0.1405 S13: -0.3115 REMARK 3 S21: -0.0381 S22: -0.0309 S23: 0.1369 REMARK 3 S31: 0.1071 S32: -0.0411 S33: 0.1703 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3PLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54382 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE, 25% W/V POLYETHYLENE GLYCOL 4000, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.52700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 285 REMARK 465 LYS A 286 REMARK 465 LYS A 287 REMARK 465 GLY A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 LEU A 295 REMARK 465 VAL A 296 REMARK 465 PRO A 297 REMARK 465 ARG A 298 REMARK 465 GLY A 299 REMARK 465 GLN A 330 REMARK 465 ALA A 331 REMARK 465 ASN A 332 REMARK 465 ARG A 333 REMARK 465 SER A 334 REMARK 465 LYS A 335 REMARK 465 HIS A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 539 REMARK 465 ARG A 540 REMARK 465 ALA A 541 REMARK 465 ASP C 752 REMARK 465 ASP C 753 REMARK 465 MET B 285 REMARK 465 LYS B 286 REMARK 465 LYS B 287 REMARK 465 GLY B 288 REMARK 465 HIS B 289 REMARK 465 HIS B 290 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 LEU B 295 REMARK 465 VAL B 296 REMARK 465 PRO B 297 REMARK 465 ARG B 298 REMARK 465 GLY B 299 REMARK 465 SER B 334 REMARK 465 ALA B 541 REMARK 465 ASP D 752 REMARK 465 ASP D 753 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 314 CG OD1 OD2 REMARK 470 GLN A 317 CG CD OE1 NE2 REMARK 470 LYS A 321 CE NZ REMARK 470 GLN A 327 CG CD OE1 NE2 REMARK 470 GLN A 328 CG CD OE1 NE2 REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 LEU A 339 CG CD1 CD2 REMARK 470 LYS A 347 CE NZ REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 GLU A 400 CG CD OE1 OE2 REMARK 470 GLN A 410 CG CD OE1 NE2 REMARK 470 LYS A 437 CG CD CE NZ REMARK 470 GLN A 491 CG CD OE1 NE2 REMARK 470 GLU A 494 CG CD OE1 OE2 REMARK 470 GLN A 498 CD OE1 NE2 REMARK 470 GLU C 741 CG CD OE1 OE2 REMARK 470 SER B 300 OG REMARK 470 GLN B 317 CD OE1 NE2 REMARK 470 LYS B 321 CG CD CE NZ REMARK 470 GLN B 328 CG CD OE1 NE2 REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 HIS B 336 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 LYS B 338 CG CD CE NZ REMARK 470 LYS B 399 CG CD CE NZ REMARK 470 GLU B 400 CG CD OE1 OE2 REMARK 470 GLN B 409 CG CD OE1 NE2 REMARK 470 GLU B 433 CD OE1 OE2 REMARK 470 LYS B 462 CG CD CE NZ REMARK 470 GLN B 491 CG CD OE1 NE2 REMARK 470 GLU B 494 CG CD OE1 OE2 REMARK 470 ASN B 523 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 365 -55.55 73.55 REMARK 500 ASN A 466 62.48 -102.69 REMARK 500 ASN C 742 98.88 -162.24 REMARK 500 PHE B 365 -54.96 71.89 REMARK 500 ASN B 466 64.89 -112.06 REMARK 500 TYR B 489 55.87 -140.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 470 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 470 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YOK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN LRH-1 BOUND WITH TIF-2 PEPTIDE AND REMARK 900 PHOSPHATIDYLGLYCEROL DBREF 3PLZ A 300 541 UNP Q9UEC0 Q9UEC0_HUMAN 300 541 DBREF 3PLZ C 740 753 UNP Q15596 NCOA2_HUMAN 740 753 DBREF 3PLZ B 300 541 UNP Q9UEC0 Q9UEC0_HUMAN 300 541 DBREF 3PLZ D 740 753 UNP Q15596 NCOA2_HUMAN 740 753 SEQADV 3PLZ MET A 285 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ LYS A 286 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ LYS A 287 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ GLY A 288 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS A 289 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS A 290 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS A 291 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS A 292 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS A 293 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS A 294 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ LEU A 295 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ VAL A 296 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ PRO A 297 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ ARG A 298 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ GLY A 299 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ MET B 285 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ LYS B 286 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ LYS B 287 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ GLY B 288 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS B 289 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS B 290 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS B 291 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS B 292 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS B 293 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ HIS B 294 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ LEU B 295 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ VAL B 296 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ PRO B 297 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ ARG B 298 UNP Q9UEC0 EXPRESSION TAG SEQADV 3PLZ GLY B 299 UNP Q9UEC0 EXPRESSION TAG SEQRES 1 A 257 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS LEU VAL PRO SEQRES 2 A 257 ARG GLY SER ILE PRO HIS LEU ILE LEU GLU LEU LEU LYS SEQRES 3 A 257 CYS GLU PRO ASP GLU PRO GLN VAL GLN ALA LYS ILE MET SEQRES 4 A 257 ALA TYR LEU GLN GLN GLU GLN ALA ASN ARG SER LYS HIS SEQRES 5 A 257 GLU LYS LEU SER THR PHE GLY LEU MET CYS LYS MET ALA SEQRES 6 A 257 ASP GLN THR LEU PHE SER ILE VAL GLU TRP ALA ARG SER SEQRES 7 A 257 SER ILE PHE PHE ARG GLU LEU LYS VAL ASP ASP GLN MET SEQRES 8 A 257 LYS LEU LEU GLN ASN CYS TRP SER GLU LEU LEU ILE LEU SEQRES 9 A 257 ASP HIS ILE TYR ARG GLN VAL VAL HIS GLY LYS GLU GLY SEQRES 10 A 257 SER ILE PHE LEU VAL THR GLY GLN GLN VAL ASP TYR SER SEQRES 11 A 257 ILE ILE ALA SER GLN ALA GLY ALA THR LEU ASN ASN LEU SEQRES 12 A 257 MET SER HIS ALA GLN GLU LEU VAL ALA LYS LEU ARG SER SEQRES 13 A 257 LEU GLN PHE ASP GLN ARG GLU PHE VAL CYS LEU LYS PHE SEQRES 14 A 257 LEU VAL LEU PHE SER LEU ASP VAL LYS ASN LEU GLU ASN SEQRES 15 A 257 PHE GLN LEU VAL GLU GLY VAL GLN GLU GLN VAL ASN ALA SEQRES 16 A 257 ALA LEU LEU ASP TYR THR MET CYS ASN TYR PRO GLN GLN SEQRES 17 A 257 THR GLU LYS PHE GLY GLN LEU LEU LEU ARG LEU PRO GLU SEQRES 18 A 257 ILE ARG ALA ILE SER MET GLN ALA GLU GLU TYR LEU TYR SEQRES 19 A 257 TYR LYS HIS LEU ASN GLY ASP VAL PRO TYR ASN ASN LEU SEQRES 20 A 257 LEU ILE GLU MET LEU HIS ALA LYS ARG ALA SEQRES 1 C 14 LYS GLU ASN ALA LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 C 14 ASP SEQRES 1 B 257 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS LEU VAL PRO SEQRES 2 B 257 ARG GLY SER ILE PRO HIS LEU ILE LEU GLU LEU LEU LYS SEQRES 3 B 257 CYS GLU PRO ASP GLU PRO GLN VAL GLN ALA LYS ILE MET SEQRES 4 B 257 ALA TYR LEU GLN GLN GLU GLN ALA ASN ARG SER LYS HIS SEQRES 5 B 257 GLU LYS LEU SER THR PHE GLY LEU MET CYS LYS MET ALA SEQRES 6 B 257 ASP GLN THR LEU PHE SER ILE VAL GLU TRP ALA ARG SER SEQRES 7 B 257 SER ILE PHE PHE ARG GLU LEU LYS VAL ASP ASP GLN MET SEQRES 8 B 257 LYS LEU LEU GLN ASN CYS TRP SER GLU LEU LEU ILE LEU SEQRES 9 B 257 ASP HIS ILE TYR ARG GLN VAL VAL HIS GLY LYS GLU GLY SEQRES 10 B 257 SER ILE PHE LEU VAL THR GLY GLN GLN VAL ASP TYR SER SEQRES 11 B 257 ILE ILE ALA SER GLN ALA GLY ALA THR LEU ASN ASN LEU SEQRES 12 B 257 MET SER HIS ALA GLN GLU LEU VAL ALA LYS LEU ARG SER SEQRES 13 B 257 LEU GLN PHE ASP GLN ARG GLU PHE VAL CYS LEU LYS PHE SEQRES 14 B 257 LEU VAL LEU PHE SER LEU ASP VAL LYS ASN LEU GLU ASN SEQRES 15 B 257 PHE GLN LEU VAL GLU GLY VAL GLN GLU GLN VAL ASN ALA SEQRES 16 B 257 ALA LEU LEU ASP TYR THR MET CYS ASN TYR PRO GLN GLN SEQRES 17 B 257 THR GLU LYS PHE GLY GLN LEU LEU LEU ARG LEU PRO GLU SEQRES 18 B 257 ILE ARG ALA ILE SER MET GLN ALA GLU GLU TYR LEU TYR SEQRES 19 B 257 TYR LYS HIS LEU ASN GLY ASP VAL PRO TYR ASN ASN LEU SEQRES 20 B 257 LEU ILE GLU MET LEU HIS ALA LYS ARG ALA SEQRES 1 D 14 LYS GLU ASN ALA LEU LEU ARG TYR LEU LEU ASP LYS ASP SEQRES 2 D 14 ASP HET 470 A 1 29 HET EDO A 2 4 HET 470 B 1 29 HET EDO B 2 4 HETNAM 470 (3AS,6AR)-5-[(4E)-OCT-4-EN-4-YL]-N,4-DIPHENYL-2,3,6,6A- HETNAM 2 470 TETRAHYDROPENTALEN-3A(1H)-AMINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 470 2(C28 H35 N) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 9 HOH *305(H2 O) HELIX 1 1 PRO A 302 CYS A 311 1 10 HELIX 2 2 ASP A 314 GLU A 329 1 16 HELIX 3 3 SER A 340 SER A 363 1 24 HELIX 4 4 PHE A 365 LEU A 369 5 5 HELIX 5 5 LYS A 370 GLY A 398 1 29 HELIX 6 6 TYR A 413 SER A 418 1 6 HELIX 7 7 GLY A 421 LEU A 441 1 21 HELIX 8 8 ASP A 444 PHE A 457 1 14 HELIX 9 9 ASN A 466 TYR A 489 1 24 HELIX 10 10 GLU A 494 LEU A 501 1 8 HELIX 11 11 LEU A 501 ASN A 523 1 23 HELIX 12 12 ASN A 530 HIS A 537 1 8 HELIX 13 13 ASN C 742 LYS C 751 1 10 HELIX 14 14 PRO B 302 CYS B 311 1 10 HELIX 15 15 ASP B 314 ASN B 332 1 19 HELIX 16 16 SER B 340 SER B 363 1 24 HELIX 17 17 PHE B 365 LEU B 369 5 5 HELIX 18 18 LYS B 370 GLY B 398 1 29 HELIX 19 19 TYR B 413 ALA B 420 1 8 HELIX 20 20 GLY B 421 GLN B 442 1 22 HELIX 21 21 ASP B 444 PHE B 457 1 14 HELIX 22 22 ASN B 466 TYR B 489 1 24 HELIX 23 23 GLU B 494 LEU B 501 1 8 HELIX 24 24 LEU B 501 ASN B 523 1 23 HELIX 25 25 ASN B 530 LYS B 539 1 10 HELIX 26 26 ASN D 742 LYS D 751 1 10 SHEET 1 A 2 SER A 402 PHE A 404 0 SHEET 2 A 2 GLN A 410 ASP A 412 -1 O VAL A 411 N ILE A 403 SHEET 1 B 2 SER B 402 PHE B 404 0 SHEET 2 B 2 GLN B 410 ASP B 412 -1 O VAL B 411 N ILE B 403 SITE 1 AC1 5 MET A 345 HIS A 390 ILE A 403 MET A 428 SITE 2 AC1 5 LEU A 517 SITE 1 AC2 3 MET B 345 HIS B 390 LEU B 517 SITE 1 AC3 4 HOH B 157 SER B 355 TRP B 359 LYS B 452 CRYST1 52.667 89.054 65.453 90.00 101.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018987 0.000000 0.003936 0.00000 SCALE2 0.000000 0.011229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015603 0.00000