PDB Short entry for 3PP2 HEADER HYDROLASE ACTIVATOR 23-NOV-10 3PP2 TITLE CRYSTAL STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF ARHGAP27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GTPASE-ACTIVATING PROTEIN 27; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 491-613; COMPND 5 SYNONYM: CIN85-ASSOCIATED MULTI-DOMAIN-CONTAINING RHO GTPASE- COMPND 6 ACTIVATING PROTEIN 1, RHO-TYPE GTPASE-ACTIVATING PROTEIN 27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGAP27, CAMGAP1, SH3D20, PP905; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS PH DOMAIN, GTPASE ACTIVATOR, PLECKSTRIN HOMOLOGY DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, HYDROLASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR L.SHEN,W.TEMPEL,Y.TONG,L.NEDYALKOVA,Y.LI,A.K.WERNIMONT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,H.PARK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 3 21-FEB-24 3PP2 1 REMARK SEQADV REVDAT 2 08-NOV-17 3PP2 1 REMARK REVDAT 1 08-DEC-10 3PP2 0 JRNL AUTH L.SHEN,W.TEMPEL,Y.TONG,L.NEDYALKOVA,Y.LI,A.K.WERNIMONT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF JRNL TITL 2 ARHGAP27 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 70020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.427 REMARK 3 FREE R VALUE TEST SET COUNT : 3100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4869 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41900 REMARK 3 B22 (A**2) : 0.41900 REMARK 3 B33 (A**2) : -0.62800 REMARK 3 B12 (A**2) : 0.20900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1908 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1318 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2592 ; 1.669 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3222 ; 0.924 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.798 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;31.608 ;23.467 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;11.721 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.528 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2091 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 372 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 1.947 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 465 ; 0.536 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1828 ; 3.140 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 773 ; 4.156 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 751 ; 6.198 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3226 ; 1.593 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3PP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 136029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.87200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM CITRATE, 0.1 M HEPES, REMARK 280 1:100 W/W ENDOPROTEINASE GLU-C V8, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.30300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.60600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.60600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.30300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.60600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 UNK UNX A 998 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 490 REMARK 465 ALA A 491 REMARK 465 VAL A 492 REMARK 465 ARG A 493 REMARK 465 THR A 494 REMARK 465 LYS A 495 REMARK 465 THR A 496 REMARK 465 LEU A 497 REMARK 465 ALA A 542 REMARK 465 ALA A 543 REMARK 465 GLY A 544 REMARK 465 GLU A 613 REMARK 465 MET B 490 REMARK 465 ALA B 491 REMARK 465 VAL B 492 REMARK 465 ARG B 493 REMARK 465 THR B 494 REMARK 465 LYS B 495 REMARK 465 THR B 496 REMARK 465 LYS B 539 REMARK 465 THR B 540 REMARK 465 SER B 541 REMARK 465 ALA B 542 REMARK 465 ALA B 543 REMARK 465 GLY B 544 REMARK 465 GLU B 613 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 516 CZ NH1 NH2 REMARK 470 LYS A 517 CE NZ REMARK 470 SER A 541 OG REMARK 470 LYS A 551 CE NZ REMARK 470 ARG A 562 NE CZ NH1 NH2 REMARK 470 LYS A 573 NZ REMARK 470 LYS A 577 CE NZ REMARK 470 ARG A 583 NE CZ NH1 NH2 REMARK 470 GLN A 612 CG CD OE1 NE2 REMARK 470 LEU B 497 CG CD1 CD2 REMARK 470 ARG B 516 NE CZ NH1 NH2 REMARK 470 LYS B 517 CE NZ REMARK 470 ARG B 547 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 571 CG CD CE NZ REMARK 470 ASP B 572 CG OD1 OD2 REMARK 470 LYS B 573 CD CE NZ REMARK 470 LYS B 577 CE NZ REMARK 470 ARG B 583 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 550 UNK UNX A 1007 2.08 REMARK 500 OD1 ASP B 498 UNK UNX B 1005 2.08 REMARK 500 UNK UNX B 1005 O HOH B 186 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 597 CB GLU B 597 CG -0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 553 -149.66 68.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 616 REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXPERIMENTAL CONSTRUCT SUBJECTED TO PROTEOLYSIS: REMARK 999 MAVRTKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEY DBREF 3PP2 A 491 613 UNP Q6ZUM4 RHG27_HUMAN 491 613 DBREF 3PP2 B 491 613 UNP Q6ZUM4 RHG27_HUMAN 491 613 SEQADV 3PP2 MET A 490 UNP Q6ZUM4 EXPRESSION TAG SEQADV 3PP2 MET B 490 UNP Q6ZUM4 EXPRESSION TAG SEQRES 1 A 124 MET ALA VAL ARG THR LYS THR LEU ASP LYS ALA GLY VAL SEQRES 2 A 124 LEU HIS ARG THR LYS THR ALA ASP LYS GLY LYS ARG LEU SEQRES 3 A 124 ARG LYS LYS HIS TRP SER ALA SER TRP THR VAL LEU GLU SEQRES 4 A 124 GLY GLY VAL LEU THR PHE PHE LYS ASP SER LYS THR SER SEQRES 5 A 124 ALA ALA GLY GLY LEU ARG GLN PRO SER LYS PHE SER THR SEQRES 6 A 124 PRO GLU TYR THR VAL GLU LEU ARG GLY ALA THR LEU SER SEQRES 7 A 124 TRP ALA PRO LYS ASP LYS SER SER ARG LYS ASN VAL LEU SEQRES 8 A 124 GLU LEU ARG SER ARG ASP GLY SER GLU TYR LEU ILE GLN SEQRES 9 A 124 HIS ASP SER GLU ALA ILE ILE SER THR TRP HIS LYS ALA SEQRES 10 A 124 ILE ALA GLN GLY ILE GLN GLU SEQRES 1 B 124 MET ALA VAL ARG THR LYS THR LEU ASP LYS ALA GLY VAL SEQRES 2 B 124 LEU HIS ARG THR LYS THR ALA ASP LYS GLY LYS ARG LEU SEQRES 3 B 124 ARG LYS LYS HIS TRP SER ALA SER TRP THR VAL LEU GLU SEQRES 4 B 124 GLY GLY VAL LEU THR PHE PHE LYS ASP SER LYS THR SER SEQRES 5 B 124 ALA ALA GLY GLY LEU ARG GLN PRO SER LYS PHE SER THR SEQRES 6 B 124 PRO GLU TYR THR VAL GLU LEU ARG GLY ALA THR LEU SER SEQRES 7 B 124 TRP ALA PRO LYS ASP LYS SER SER ARG LYS ASN VAL LEU SEQRES 8 B 124 GLU LEU ARG SER ARG ASP GLY SER GLU TYR LEU ILE GLN SEQRES 9 B 124 HIS ASP SER GLU ALA ILE ILE SER THR TRP HIS LYS ALA SEQRES 10 B 124 ILE ALA GLN GLY ILE GLN GLU HET CIT A 1 13 HET CIT A 614 13 HET CIT A 615 13 HET UNX A 982 1 HET UNX A 983 1 HET UNX A 984 1 HET UNX A 987 1 HET UNX A 991 1 HET UNX A 993 1 HET UNX A 994 1 HET UNX A 995 1 HET UNX A 998 1 HET UNX A1002 1 HET UNX A1004 1 HET UNX A1007 1 HET GOL B 1 6 HET GOL B 614 6 HET CIT B 615 13 HET CIT B 616 13 HET UNX B 985 1 HET UNX B 988 1 HET UNX B 989 1 HET UNX B 990 1 HET UNX B 992 1 HET UNX B 996 1 HET UNX B 997 1 HET UNX B 999 1 HET UNX B1000 1 HET UNX B1001 1 HET UNX B1003 1 HET UNX B1005 1 HET UNX B1006 1 HETNAM CIT CITRIC ACID HETNAM UNX UNKNOWN ATOM OR ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CIT 5(C6 H8 O7) FORMUL 6 UNX 25(X) FORMUL 18 GOL 2(C3 H8 O3) FORMUL 35 HOH *128(H2 O) HELIX 1 1 GLN A 548 SER A 553 5 6 HELIX 2 2 PRO A 570 SER A 574 5 5 HELIX 3 3 SER A 596 GLN A 612 1 17 HELIX 4 4 GLN B 548 PHE B 552 5 5 HELIX 5 5 SER B 596 GLN B 612 1 17 SHEET 1 A 5 LYS A 513 ARG A 514 0 SHEET 2 A 5 LYS A 499 ASP A 510 -1 N ASP A 510 O LYS A 513 SHEET 3 A 5 SER A 521 GLU A 528 -1 O LEU A 527 N LYS A 499 SHEET 4 A 5 VAL A 531 PHE A 535 -1 O THR A 533 N VAL A 526 SHEET 5 A 5 PRO A 555 GLU A 560 -1 O VAL A 559 N LEU A 532 SHEET 1 B 5 LYS A 513 ARG A 514 0 SHEET 2 B 5 LYS A 499 ASP A 510 -1 N ASP A 510 O LYS A 513 SHEET 3 B 5 GLU A 589 GLN A 593 -1 O GLU A 589 N THR A 508 SHEET 4 B 5 VAL A 579 ARG A 583 -1 N LEU A 580 O ILE A 592 SHEET 5 B 5 THR A 565 TRP A 568 -1 N THR A 565 O ARG A 583 SHEET 1 C 5 LYS B 513 ARG B 514 0 SHEET 2 C 5 ASP B 498 ASP B 510 -1 N ASP B 510 O LYS B 513 SHEET 3 C 5 SER B 521 GLU B 528 -1 O LEU B 527 N LYS B 499 SHEET 4 C 5 VAL B 531 PHE B 535 -1 O THR B 533 N VAL B 526 SHEET 5 C 5 PRO B 555 GLU B 560 -1 O VAL B 559 N LEU B 532 SHEET 1 D 5 LYS B 513 ARG B 514 0 SHEET 2 D 5 ASP B 498 ASP B 510 -1 N ASP B 510 O LYS B 513 SHEET 3 D 5 GLU B 589 GLN B 593 -1 O GLU B 589 N THR B 508 SHEET 4 D 5 LEU B 580 ARG B 583 -1 N LEU B 580 O ILE B 592 SHEET 5 D 5 THR B 565 TRP B 568 -1 N SER B 567 O GLU B 581 SITE 1 AC1 6 GLY A 512 LYS A 513 ARG A 514 HOH B 61 SITE 2 AC1 6 LYS B 517 HIS B 519 SITE 1 AC2 5 LYS A 518 TRP A 520 SER A 574 SER A 575 SITE 2 AC2 5 ARG A 576 SITE 1 AC3 5 LYS A 517 HIS A 519 GLY B 512 LYS B 513 SITE 2 AC3 5 ARG B 514 SITE 1 AC4 4 VAL A 502 ALA B 500 GLY B 501 TRP B 603 SITE 1 AC5 6 ASP A 595 GLU A 597 HOH B 20 LYS B 499 SITE 2 AC5 6 THR B 602 LYS B 605 SITE 1 AC6 5 LYS B 518 TRP B 520 SER B 574 SER B 575 SITE 2 AC6 5 ARG B 576 SITE 1 AC7 9 HOH A 169 HOH A 173 LYS A 511 SER A 550 SITE 2 AC7 9 LYS A 551 HOH B 123 GLU B 556 TYR B 557 SITE 3 AC7 9 THR B 558 CRYST1 98.243 98.243 66.909 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010179 0.005877 0.000000 0.00000 SCALE2 0.000000 0.011754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014946 0.00000