PDB Short entry for 3PPA HEADER HYDROLASE 24-NOV-10 3PPA TITLE STRUCTURE OF THE DUSP-UBL DOMAINS OF USP15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DUSP AND UBL DOMAINS (UNP RESIDUES 6-223); COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 15, UBIQUITIN THIOLESTERASE 15, COMPND 6 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 15, UNPH-2, UNPH4; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0529, USP15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC KEYWDS HYDROLASE, UCH, USP, DUB, DEUBIQUITYLATION, DEUBIQUITINATING ENZYME, KEYWDS 2 UBIQUITIN, UBIQUITIN SPECIFIC PROTEASE, UBIQUITIN CARBOXYTERMINAL KEYWDS 3 HYDROLASE, CLEAVAGE, USP15, DUB15, UBP15, ENDOPEPTIDASE, KEYWDS 4 THIOLESTERASE, DUSP, DOMAIN-SWAPPING, STRUCTURAL GENOMICS CONSORTIUM KEYWDS 5 (SGC), PHOSPHOPROTEIN, PROTEASE, THIOL PROTEASE, UBL CONJUGATION KEYWDS 6 PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,A.E.ASINAS,A.DONG,J.WEIGELT,C.BOUNTRA,A.M.EDWARDS, AUTHOR 2 C.H.ARROWSMITH,S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 06-SEP-23 3PPA 1 REMARK SEQADV REVDAT 1 19-JAN-11 3PPA 0 JRNL AUTH J.R.WALKER,A.E.ASINAS,A.DONG,J.WEIGELT,C.BOUNTRA, JRNL AUTH 2 A.M.EDWARDS,C.H.ARROWSMITH,S.DHE-PAGANON JRNL TITL STRUCTURE OF THE DUSP-UBL DOMAINS OF THE UBIQUITIN-SPECIFIC JRNL TITL 2 PROTEASE 15 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 660 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2714 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2929 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2569 REMARK 3 BIN R VALUE (WORKING SET) : 0.2924 REMARK 3 BIN FREE R VALUE : 0.3029 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.34 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.89760 REMARK 3 B22 (A**2) : -16.89760 REMARK 3 B33 (A**2) : 33.79530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.889 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.896 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1683 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 2294 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 560 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 40 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 239 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 1683 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 223 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1768 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.84 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.99 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -15.8343 31.2989 31.4737 REMARK 3 T TENSOR REMARK 3 T11: -0.2072 T22: -0.0958 REMARK 3 T33: -0.3054 T12: -0.1476 REMARK 3 T13: 0.0071 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 1.2296 L22: 2.1939 REMARK 3 L33: 6.4225 L12: 0.5625 REMARK 3 L13: 0.3985 L23: 2.7617 REMARK 3 S TENSOR REMARK 3 S11: -0.1776 S12: 0.1554 S13: -0.0204 REMARK 3 S21: -0.1182 S22: -0.1869 S23: 0.1378 REMARK 3 S31: -0.1264 S32: 0.0357 S33: 0.3646 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13829 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.3280 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3JYU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M AMMONIUM FORMATE, 1.0 M LITHIUM REMARK 280 SULFATE, 0.1 M CITRATE PH 5.6; 1 UM DISPASE ADDED, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.1K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.68000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.84000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 129.68000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.84000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 129.68000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 64.84000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 129.68000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -231.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -37.08500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 64.23310 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 64.84000 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -37.08500 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 64.23310 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 64.84000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C3 CIT A 322 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 311 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 0 REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 ASP A 73 REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 ALA A 76 REMARK 465 GLY A 109 REMARK 465 GLY A 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 NE CZ NH1 NH2 REMARK 470 SER A 14 OG REMARK 470 ILE A 16 CD1 REMARK 470 LYS A 21 CD CE NZ REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 LYS A 42 CE NZ REMARK 470 VAL A 45 CG1 CG2 REMARK 470 GLN A 58 CG CD OE1 NE2 REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 VAL A 60 CG1 CG2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 GLN A 77 CD OE1 NE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ILE A 90 CD1 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 LYS A 125 CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 137 CE NZ REMARK 470 ASN A 143 CG OD1 ND2 REMARK 470 ASN A 145 CG OD1 ND2 REMARK 470 VAL A 147 CG1 CG2 REMARK 470 ARG A 151 NE CZ NH1 NH2 REMARK 470 ILE A 161 CD1 REMARK 470 LYS A 163 CE NZ REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 LYS A 175 CD CE NZ REMARK 470 LYS A 182 CE NZ REMARK 470 SER A 185 OG REMARK 470 ASN A 186 CG OD1 ND2 REMARK 470 ILE A 198 CG1 CG2 CD1 REMARK 470 GLN A 199 CG CD OE1 NE2 REMARK 470 GLN A 205 CG CD OE1 NE2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 58 -9.89 -59.98 REMARK 500 GLU A 86 -50.00 70.81 REMARK 500 THR A 105 -177.26 70.60 REMARK 500 TYR A 183 -169.10 -107.63 REMARK 500 LEU A 191 69.12 -107.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 322 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W6V RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE DUSP DOMAIN OF HUSP15 REMARK 900 RELATED ID: 3LMN RELATED DB: PDB REMARK 900 OLIGOMERIC STRUCTURE OF THE DUSP DOMAIN OF HUMAN USP15 DBREF 3PPA A 6 223 UNP Q9Y4E8 UBP15_HUMAN 6 223 SEQADV 3PPA MET A -13 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA GLY A -12 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA SER A -11 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA SER A -10 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA HIS A -9 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA HIS A -8 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA HIS A -7 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA HIS A -6 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA HIS A -5 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA HIS A -4 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA SER A -3 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA SER A -2 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA GLY A -1 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA LEU A 0 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA VAL A 1 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA PRO A 2 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA ARG A 3 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA GLY A 4 UNP Q9Y4E8 EXPRESSION TAG SEQADV 3PPA SER A 5 UNP Q9Y4E8 EXPRESSION TAG SEQRES 1 A 237 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 237 LEU VAL PRO ARG GLY SER ALA ALA ASP LEU ASP THR GLN SEQRES 3 A 237 ARG SER ASP ILE ALA THR LEU LEU LYS THR SER LEU ARG SEQRES 4 A 237 LYS GLY ASP THR TRP TYR LEU VAL ASP SER ARG TRP PHE SEQRES 5 A 237 LYS GLN TRP LYS LYS TYR VAL GLY PHE ASP SER TRP ASP SEQRES 6 A 237 LYS TYR GLN MET GLY ASP GLN ASN VAL TYR PRO GLY PRO SEQRES 7 A 237 ILE ASP ASN SER GLY LEU LEU LYS ASP GLY ASP ALA GLN SEQRES 8 A 237 SER LEU LYS GLU HIS LEU ILE ASP GLU LEU ASP TYR ILE SEQRES 9 A 237 LEU LEU PRO THR GLU GLY TRP ASN LYS LEU VAL SER TRP SEQRES 10 A 237 TYR THR LEU MET GLU GLY GLN GLU PRO ILE ALA ARG LYS SEQRES 11 A 237 VAL VAL GLU GLN GLY MET PHE VAL LYS HIS CYS LYS VAL SEQRES 12 A 237 GLU VAL TYR LEU THR GLU LEU LYS LEU CYS GLU ASN GLY SEQRES 13 A 237 ASN MET ASN ASN VAL VAL THR ARG ARG PHE SER LYS ALA SEQRES 14 A 237 ASP THR ILE ASP THR ILE GLU LYS GLU ILE ARG LYS ILE SEQRES 15 A 237 PHE SER ILE PRO ASP GLU LYS GLU THR ARG LEU TRP ASN SEQRES 16 A 237 LYS TYR MET SER ASN THR PHE GLU PRO LEU ASN LYS PRO SEQRES 17 A 237 ASP SER THR ILE GLN ASP ALA GLY LEU TYR GLN GLY GLN SEQRES 18 A 237 VAL LEU VAL ILE GLU GLN LYS ASN GLU ASP GLY THR TRP SEQRES 19 A 237 PRO ARG GLY HET SO4 A 319 5 HET SO4 A 320 5 HET SO4 A 321 5 HET CIT A 322 13 HETNAM SO4 SULFATE ION HETNAM CIT CITRIC ACID FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 CIT C6 H8 O7 FORMUL 6 HOH *18(H2 O) HELIX 1 1 LEU A 9 LEU A 20 1 12 HELIX 2 2 SER A 35 GLY A 46 1 12 HELIX 3 3 THR A 94 THR A 105 1 12 HELIX 4 4 THR A 157 PHE A 169 1 13 SHEET 1 A 3 TYR A 89 PRO A 93 0 SHEET 2 A 3 THR A 29 ASP A 34 -1 N TYR A 31 O LEU A 92 SHEET 3 A 3 ALA A 114 LYS A 116 -1 O ARG A 115 N TRP A 30 SHEET 1 B 5 VAL A 148 PHE A 152 0 SHEET 2 B 5 THR A 134 GLU A 140 -1 N LEU A 138 O VAL A 148 SHEET 3 B 5 VAL A 208 GLN A 213 1 O LEU A 209 N LYS A 137 SHEET 4 B 5 THR A 177 LYS A 182 -1 N TRP A 180 O VAL A 210 SHEET 5 B 5 PHE A 188 PRO A 190 -1 O GLU A 189 N ASN A 181 SITE 1 AC1 2 TYR A 183 MET A 184 SITE 1 AC2 4 GLU A 130 VAL A 131 TYR A 132 LYS A 154 SITE 1 AC3 4 GLU A 135 THR A 149 ARG A 150 ARG A 151 SITE 1 AC4 1 TYR A 61 CRYST1 74.170 74.170 194.520 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013483 0.007784 0.000000 0.00000 SCALE2 0.000000 0.015568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005141 0.00000