PDB Short entry for 3PW2 HEADER TRANSFERASE/DNA 07-DEC-10 3PW2 TITLE TERNARY COMPLEX OF AFLATOXIN B1 ADDUCT MODIFIED DNA (AFB1-FAPY) WITH TITLE 2 DNA POLYMERASE IV AND INCOMING DTTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-341; COMPND 5 SYNONYM: POL IV; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*TP*TP*(PVX) COMPND 10 P*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: MODIFIED DNA TEMPLATE; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: DNA PRIMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: DBH, DPO4, SSO2448; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE, DNA ADDUCT, TERNARY COMPLEX OF DPO4-DNA-DTTP, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BANERJEE REVDAT 2 21-SEP-11 3PW2 1 JRNL REVDAT 1 10-AUG-11 3PW2 0 JRNL AUTH S.BANERJEE,K.L.BROWN,M.EGLI,M.P.STONE JRNL TITL BYPASS OF AFLATOXIN B(1) ADDUCTS BY THE SULFOLOBUS JRNL TITL 2 SOLFATARICUS DNA POLYMERASE IV. JRNL REF J.AM.CHEM.SOC. V. 133 12556 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21790157 JRNL DOI 10.1021/JA2015668 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 308018.220 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 13180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1337 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 48.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1039 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE : 0.4920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 119 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.045 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2754 REMARK 3 NUCLEIC ACID ATOMS : 592 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.51000 REMARK 3 B22 (A**2) : 4.41000 REMARK 3 B33 (A**2) : -8.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 50.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.93 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.520 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.690 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.330 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.810 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 12.38 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_FAB_N.PARAM REMARK 3 PARAMETER FILE 3 : DTTP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA_FAB_N.TOP REMARK 3 TOPOLOGY FILE 3 : DTTP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESOLUTION-DEPENDENT WEIGHTING SCHEME REMARK 3 BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3PW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-11. REMARK 100 THE RCSB ID CODE IS RCSB062881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 29.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.12350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.20350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.12350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.20350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2100 O HOH A 2100 2435 2.08 REMARK 500 O HOH A 2090 O HOH A 2095 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 11 50.41 24.76 REMARK 500 ASN A 21 84.90 -167.68 REMARK 500 LYS A 25 148.90 -39.13 REMARK 500 GLU A 39 109.93 -57.89 REMARK 500 THR A 46 154.29 177.32 REMARK 500 ARG A 78 72.11 -117.18 REMARK 500 ASN A 162 68.06 37.60 REMARK 500 ASN A 235 66.89 -160.87 REMARK 500 SER A 245 144.28 -177.15 REMARK 500 ARG A 257 -14.98 -141.37 REMARK 500 ASP A 278 87.67 32.73 REMARK 500 LYS A 279 -28.13 82.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2081 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A2095 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A2097 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH B2032 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH B2076 DISTANCE = 5.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TTP A 400 O2B REMARK 620 2 ASP A 106 OD2 107.1 REMARK 620 3 PHE A 9 O 72.0 80.5 REMARK 620 4 ASP A 8 OD1 133.1 98.5 74.5 REMARK 620 5 TTP A 400 O3A 50.4 111.8 122.4 146.8 REMARK 620 6 TTP A 400 O2G 53.4 150.9 73.0 86.0 74.2 REMARK 620 7 HOH A2026 O 100.7 129.2 149.4 91.9 58.7 78.9 REMARK 620 8 ASP A 8 OD2 173.4 79.3 111.0 45.1 126.5 121.2 73.7 REMARK 620 9 TTP A 400 O1A 69.5 67.4 118.2 157.2 44.7 115.2 84.6 112.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 182 O REMARK 620 2 HOH C2001 O 147.8 REMARK 620 3 HOH C2002 O 71.0 91.8 REMARK 620 4 ILE A 187 O 72.3 79.2 84.3 REMARK 620 5 HOH C2003 O 76.8 118.5 59.5 138.5 REMARK 620 6 HOH A2004 O 95.6 87.7 152.9 69.0 142.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 106 OD1 REMARK 620 2 ASP A 8 OD2 108.1 REMARK 620 3 TTP A 400 O2A 113.9 116.8 REMARK 620 4 HOH A2044 O 168.8 82.7 61.7 REMARK 620 5 ASP A 106 OD2 43.4 74.7 107.1 146.5 REMARK 620 6 GLU A 107 OE2 114.8 78.3 119.8 63.6 132.6 REMARK 620 7 TTP A 400 O1A 71.1 116.3 46.7 107.3 63.4 162.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PVX RELATED DB: PDB REMARK 900 RELATED ID: 3PW0 RELATED DB: PDB REMARK 900 RELATED ID: 3PW4 RELATED DB: PDB REMARK 900 RELATED ID: 3PW5 RELATED DB: PDB REMARK 900 RELATED ID: 3PW7 RELATED DB: PDB DBREF 3PW2 A 2 342 UNP Q97W02 DPO42_SULSO 1 341 DBREF 3PW2 B 372 386 PDB 3PW2 3PW2 372 386 DBREF 3PW2 C 347 359 PDB 3PW2 3PW2 347 359 SEQADV 3PW2 HIS A -4 UNP Q97W02 EXPRESSION TAG SEQADV 3PW2 HIS A -3 UNP Q97W02 EXPRESSION TAG SEQADV 3PW2 HIS A -2 UNP Q97W02 EXPRESSION TAG SEQADV 3PW2 HIS A -1 UNP Q97W02 EXPRESSION TAG SEQADV 3PW2 HIS A 0 UNP Q97W02 EXPRESSION TAG SEQADV 3PW2 HIS A 1 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 347 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 A 347 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 A 347 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 A 347 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 A 347 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 A 347 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 A 347 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 A 347 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 A 347 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 A 347 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 A 347 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 A 347 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 A 347 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 A 347 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 A 347 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 A 347 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 A 347 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 A 347 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 A 347 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 A 347 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 A 347 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 A 347 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 A 347 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 A 347 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 A 347 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 A 347 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 A 347 ILE GLY VAL ARG PHE SER LYS PHE ILE SEQRES 1 B 15 DT DT PVX DA DA DT DC DC DT DT DC DC DC SEQRES 2 B 15 DC DC SEQRES 1 C 13 DG DG DG DG DG DA DA DG DG DA DT DT DC MODRES 3PW2 PVX B 374 DC HET PVX B 374 47 HET TTP A 400 29 HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HETNAM PVX N-(2-AMINO-5-{FORMYL[(6AS,8R,9R,9AR)-9-HYDROXY-4- HETNAM 2 PVX METHOXY-1,11-DIOXO-1,6A,8,9,9A,11- HETNAM 3 PVX HEXAHYDROCYCLOPENTA[C]FURO[3',2':4,5]FURO[2,3- HETNAM 4 PVX H]CHROMEN-8-YL]AMINO}-6-OXO-1,6-DIHYDROPYRIMIDIN-4- HETNAM 5 PVX YL)-2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO- HETNAM 6 PVX PENTOFURANOSYLAMINE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 2 PVX C27 H26 N5 O15 P FORMUL 4 TTP C10 H17 N2 O14 P3 FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *108(H2 O) HELIX 1 1 TYR A 11 LEU A 20 1 10 HELIX 2 2 ASN A 21 LYS A 25 5 5 HELIX 3 3 ASN A 48 LYS A 53 1 6 HELIX 4 4 PRO A 61 LEU A 69 1 9 HELIX 5 5 ARG A 78 GLU A 95 1 18 HELIX 6 6 ASP A 118 LYS A 138 1 21 HELIX 7 7 ASN A 148 LYS A 160 1 13 HELIX 8 8 ASP A 168 LEU A 179 1 12 HELIX 9 9 ASP A 180 VAL A 184 5 5 HELIX 10 10 GLY A 188 LEU A 198 1 11 HELIX 11 11 LEU A 203 ILE A 209 5 7 HELIX 12 12 GLU A 210 GLY A 219 1 10 HELIX 13 13 GLY A 219 ARG A 231 1 13 HELIX 14 14 ASN A 258 ASP A 278 1 21 HELIX 15 15 SER A 308 ASP A 327 1 20 SHEET 1 A 5 ILE A 100 ILE A 102 0 SHEET 2 A 5 GLU A 107 ASP A 111 -1 O TYR A 109 N GLU A 101 SHEET 3 A 5 VAL A 4 PHE A 9 -1 N LEU A 5 O LEU A 110 SHEET 4 A 5 VAL A 141 SER A 146 -1 O SER A 146 N VAL A 4 SHEET 5 A 5 ILE A 164 VAL A 166 1 O LYS A 165 N VAL A 143 SHEET 1 B 3 ALA A 43 ALA A 47 0 SHEET 2 B 3 VAL A 29 VAL A 33 -1 N VAL A 31 O THR A 46 SHEET 3 B 3 VAL A 73 PRO A 76 1 O VAL A 73 N VAL A 30 SHEET 1 C 4 SER A 245 SER A 256 0 SHEET 2 C 4 ILE A 331 PHE A 341 -1 O PHE A 338 N ILE A 246 SHEET 3 C 4 PRO A 282 THR A 291 -1 N VAL A 290 O ARG A 333 SHEET 4 C 4 ILE A 296 THR A 302 -1 O VAL A 297 N ALA A 289 LINK O3' DT B 373 P PVX B 374 1555 1555 1.61 LINK O3' PVX B 374 P DA B 375 1555 1555 1.60 LINK O2B TTP A 400 CA CA A1002 1555 1555 2.52 LINK OD2 ASP A 106 CA CA A1002 1555 1555 2.59 LINK O PHE A 9 CA CA A1002 1555 1555 2.64 LINK OD1 ASP A 8 CA CA A1002 1555 1555 2.69 LINK O ALA A 182 CA CA A1001 1555 1555 2.73 LINK CA CA A1001 O HOH C2001 1555 1555 2.77 LINK CA CA A1001 O HOH C2002 1555 1555 2.79 LINK O3A TTP A 400 CA CA A1002 1555 1555 2.86 LINK OD1 ASP A 106 CA CA A1003 1555 1555 2.94 LINK O2G TTP A 400 CA CA A1002 1555 1555 2.94 LINK OD2 ASP A 8 CA CA A1003 1555 1555 2.94 LINK O ILE A 187 CA CA A1001 1555 1555 2.95 LINK O2A TTP A 400 CA CA A1003 1555 1555 2.97 LINK CA CA A1003 O HOH A2044 1555 1555 2.97 LINK CA CA A1001 O HOH C2003 1555 1555 2.98 LINK CA CA A1001 O HOH A2004 1555 1555 3.00 LINK OD2 ASP A 106 CA CA A1003 1555 1555 3.00 LINK CA CA A1002 O HOH A2026 1555 1555 3.03 LINK OD2 ASP A 8 CA CA A1002 1555 1555 3.03 LINK OE2 GLU A 107 CA CA A1003 1555 1555 3.04 LINK O1A TTP A 400 CA CA A1003 1555 1555 3.10 LINK O1A TTP A 400 CA CA A1002 1555 1555 3.13 CISPEP 1 LYS A 160 PRO A 161 0 0.07 SITE 1 AC1 20 PHE A 9 ASP A 10 TYR A 11 PHE A 12 SITE 2 AC1 20 TYR A 13 ALA A 45 THR A 46 TYR A 49 SITE 3 AC1 20 ARG A 52 ALA A 58 ASP A 106 LYS A 160 SITE 4 AC1 20 CA A1002 CA A1003 HOH A2026 HOH A2027 SITE 5 AC1 20 HOH A2028 HOH A2044 DT B 373 PVX B 374 SITE 1 AC2 6 ALA A 182 ILE A 187 HOH A2004 HOH C2001 SITE 2 AC2 6 HOH C2002 HOH C2003 SITE 1 AC3 6 ASP A 8 PHE A 9 ASP A 106 TTP A 400 SITE 2 AC3 6 CA A1003 HOH A2026 SITE 1 AC4 6 ASP A 8 ASP A 106 GLU A 107 TTP A 400 SITE 2 AC4 6 CA A1002 HOH A2044 CRYST1 94.247 104.407 52.356 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019100 0.00000