PDB Short entry for 3PXD HEADER PROTEIN BINDING 09-DEC-10 3PXD TITLE IMPACT OF BRCA1 BRCT DOMAIN MISSENSE SUBSTITUTIONS ON PHOSPHO-PEPTIDE TITLE 2 RECOGNITION: R1835P COMPND MOL_ID: 1; COMPND 2 MOLECULE: BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT DOMAIN, UNP RESIDUES 1646-1859; COMPND 5 SYNONYM: RING FINGER PROTEIN 53; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRCA1, RNF53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLM1 KEYWDS BRCA1 PROTEIN, MISSENSE, PHOSPHOPEPTIDE RECOGNITION, BRCT TANDEM KEYWDS 2 REPEATS, PHOSPHO-PEPTIDE BINDING, NUCLEAR PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.COQUELLE,R.GREEN,J.N.M.GLOVER REVDAT 4 13-SEP-23 3PXD 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3PXD 1 REMARK REVDAT 2 15-JUN-11 3PXD 1 JRNL REVDAT 1 20-APR-11 3PXD 0 JRNL AUTH N.COQUELLE,R.GREEN,J.N.GLOVER JRNL TITL IMPACT OF BRCA1 BRCT DOMAIN MISSENSE SUBSTITUTIONS ON JRNL TITL 2 PHOSPHOPEPTIDE RECOGNITION. JRNL REF BIOCHEMISTRY V. 50 4579 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21473589 JRNL DOI 10.1021/BI2003795 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.S.LEE,R.GREEN,S.M.MARSILLAC,N.COQUELLE,R.S.WILLIAMS, REMARK 1 AUTH 2 T.YEUNG,D.FOO,D.D.HAU,B.HUI,A.N.MONTEIRO,J.N.GLOVER REMARK 1 TITL COMPREHENSIVE ANALYSIS OF MISSENSE VARIATIONS IN THE BRCT REMARK 1 TITL 2 DOMAIN OF BRCA1 BY STRUCTURAL AND FUNCTIONAL ASSAYS. REMARK 1 REF CANCER RES. V. 70 4880 2010 REMARK 1 REFN ISSN 0008-5472 REMARK 1 PMID 20516115 REMARK 1 DOI 10.1158/0008-5472.CAN-09-4563 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.S.WILLIAMS,M.S.LEE,D.D.HAU,J.N.GLOVER REMARK 1 TITL STRUCTURAL BASIS OF PHOSPHOPEPTIDE RECOGNITION BY THE BRCT REMARK 1 TITL 2 DOMAIN OF BRCA1. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 11 519 2004 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 15133503 REMARK 1 DOI 10.1038/NSMB776 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.A.CLAPPERTON,I.A.MANKE,D.M.LOWERY,T.HO,L.F.HAIRE, REMARK 1 AUTH 2 M.B.YAFFE,S.J.SMERDON REMARK 1 TITL STRUCTURE AND MECHANISM OF BRCA1 BRCT DOMAIN RECOGNITION OF REMARK 1 TITL 2 PHOSPHORYLATED BACH1 WITH IMPLICATIONS FOR CANCER. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 11 512 2004 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 15133502 REMARK 1 DOI 10.1038/NSMB775 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.S.WILLIAMS,J.N.GLOVER REMARK 1 TITL STRUCTURAL CONSEQUENCES OF A CANCER-CAUSING BRCA1-BRCT REMARK 1 TITL 2 MISSENSE MUTATION. REMARK 1 REF J.BIOL.CHEM. V. 278 2630 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12427738 REMARK 1 DOI 10.1074/JBC.M210019200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.3_473) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 11932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0902 - 4.4439 0.95 2919 154 0.2032 0.2469 REMARK 3 2 4.4439 - 3.5276 0.98 2844 150 0.2225 0.2763 REMARK 3 3 3.5276 - 3.0818 0.99 2808 148 0.2868 0.3410 REMARK 3 4 3.0818 - 2.8001 0.98 2764 145 0.3253 0.3464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 74.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73710 REMARK 3 B22 (A**2) : 1.73710 REMARK 3 B33 (A**2) : -3.47420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1729 REMARK 3 ANGLE : 1.118 2289 REMARK 3 CHIRALITY : 0.062 260 REMARK 3 PLANARITY : 0.005 289 REMARK 3 DIHEDRAL : 15.486 593 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1649:1684 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8243 50.9117 44.5334 REMARK 3 T TENSOR REMARK 3 T11: 0.5981 T22: 0.8753 REMARK 3 T33: 0.7395 T12: 0.3944 REMARK 3 T13: 0.1239 T23: 0.2188 REMARK 3 L TENSOR REMARK 3 L11: 2.3625 L22: 1.0210 REMARK 3 L33: 2.4086 L12: -0.6347 REMARK 3 L13: 0.7386 L23: 1.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.0997 S12: 0.4027 S13: 0.6852 REMARK 3 S21: -0.3493 S22: -0.1464 S23: -1.0350 REMARK 3 S31: 0.5286 S32: 1.3660 S33: 0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 1685:1741 REMARK 3 ORIGIN FOR THE GROUP (A): 33.4972 49.6272 33.9986 REMARK 3 T TENSOR REMARK 3 T11: 1.1047 T22: 1.0885 REMARK 3 T33: 0.4867 T12: 0.8631 REMARK 3 T13: 0.1183 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 3.0283 L22: 5.2854 REMARK 3 L33: 1.0056 L12: -4.0402 REMARK 3 L13: -0.4048 L23: 1.2421 REMARK 3 S TENSOR REMARK 3 S11: 1.3030 S12: 1.8675 S13: -0.2952 REMARK 3 S21: -2.0595 S22: -1.7020 S23: -0.4244 REMARK 3 S31: 0.0568 S32: 0.4325 S33: 0.0036 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 1742:1753 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0544 54.6244 26.3220 REMARK 3 T TENSOR REMARK 3 T11: 1.9688 T22: 1.8089 REMARK 3 T33: 0.5167 T12: 1.3615 REMARK 3 T13: 0.2525 T23: 0.4716 REMARK 3 L TENSOR REMARK 3 L11: 0.1991 L22: 0.4370 REMARK 3 L33: 0.2541 L12: -0.2966 REMARK 3 L13: 0.2623 L23: -0.3456 REMARK 3 S TENSOR REMARK 3 S11: 1.1961 S12: 2.0634 S13: 0.1597 REMARK 3 S21: -1.2896 S22: -0.9386 S23: 0.3719 REMARK 3 S31: 1.3091 S32: 0.0480 S33: -0.0035 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 1754:1803 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0649 70.2527 38.3797 REMARK 3 T TENSOR REMARK 3 T11: 0.4523 T22: 0.3500 REMARK 3 T33: 0.5930 T12: 0.1872 REMARK 3 T13: -0.0622 T23: 0.0832 REMARK 3 L TENSOR REMARK 3 L11: 7.5256 L22: 8.7574 REMARK 3 L33: 6.5051 L12: -4.4055 REMARK 3 L13: 2.3184 L23: -0.3679 REMARK 3 S TENSOR REMARK 3 S11: 0.1891 S12: 0.6361 S13: 1.1076 REMARK 3 S21: -0.7296 S22: -0.8411 S23: -0.1647 REMARK 3 S31: -0.1607 S32: 0.7387 S33: 0.0032 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 1804:1859 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6337 66.1427 35.1658 REMARK 3 T TENSOR REMARK 3 T11: 0.8419 T22: 0.3380 REMARK 3 T33: 0.9625 T12: 0.3762 REMARK 3 T13: -0.4716 T23: -0.2801 REMARK 3 L TENSOR REMARK 3 L11: 4.8464 L22: 2.4127 REMARK 3 L33: 6.1631 L12: -2.5225 REMARK 3 L13: 4.0331 L23: -1.9358 REMARK 3 S TENSOR REMARK 3 S11: 1.0670 S12: 0.6031 S13: -1.1429 REMARK 3 S21: -1.6581 S22: -1.1416 S23: 2.9709 REMARK 3 S31: 0.8085 S32: -0.0134 S33: 0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1N5O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M LI2SO4 100 MM TRIS 5MM CACL2 10MM REMARK 280 NICL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.64667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.29333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.97000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 101.61667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.32333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.64667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 81.29333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 101.61667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.97000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.32333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1646 REMARK 465 ASN A 1647 REMARK 465 LYS A 1648 REMARK 465 GLU A 1817 REMARK 465 ASP A 1818 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1649 CG CD NE CZ NH1 NH2 REMARK 470 MET A1663 CG SD CE REMARK 470 ARG A1670 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1726 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1727 CG CD CE NZ REMARK 470 ARG A1737 CG CD NE CZ NH1 NH2 REMARK 470 ASN A1819 CG OD1 ND2 REMARK 470 GLU A1849 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A1650 119.77 -165.90 REMARK 500 HIS A1673 39.29 71.36 REMARK 500 THR A1684 121.66 -37.39 REMARK 500 LYS A1724 1.98 -61.92 REMARK 500 GLU A1725 21.12 -147.63 REMARK 500 ARG A1726 41.58 37.91 REMARK 500 GLU A1735 173.77 -50.22 REMARK 500 ASN A1774 -26.22 77.32 REMARK 500 MET A1775 128.72 -170.31 REMARK 500 SER A1796 3.48 -67.91 REMARK 500 THR A1802 -148.02 -78.39 REMARK 500 ASP A1813 -8.23 -59.73 REMARK 500 GLU A1829 67.43 -103.82 REMARK 500 GLN A1846 119.91 -162.45 REMARK 500 ILE A1858 99.50 -66.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 11 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T2V RELATED DB: PDB REMARK 900 RELATED ID: 1T15 RELATED DB: PDB REMARK 900 RELATED ID: 1N5O RELATED DB: PDB REMARK 900 RELATED ID: 1T2U RELATED DB: PDB REMARK 900 RELATED ID: 2ING RELATED DB: PDB REMARK 900 RELATED ID: 3PXA RELATED DB: PDB REMARK 900 RELATED ID: 3PXB RELATED DB: PDB REMARK 900 RELATED ID: 3PXC RELATED DB: PDB REMARK 900 RELATED ID: 3PXE RELATED DB: PDB DBREF 3PXD A 1646 1859 UNP P38398 BRCA1_HUMAN 1646 1859 SEQADV 3PXD PRO A 1835 UNP P38398 ARG 1835 ENGINEERED MUTATION SEQRES 1 A 214 VAL ASN LYS ARG MET SER MET VAL VAL SER GLY LEU THR SEQRES 2 A 214 PRO GLU GLU PHE MET LEU VAL TYR LYS PHE ALA ARG LYS SEQRES 3 A 214 HIS HIS ILE THR LEU THR ASN LEU ILE THR GLU GLU THR SEQRES 4 A 214 THR HIS VAL VAL MET LYS THR ASP ALA GLU PHE VAL CYS SEQRES 5 A 214 GLU ARG THR LEU LYS TYR PHE LEU GLY ILE ALA GLY GLY SEQRES 6 A 214 LYS TRP VAL VAL SER TYR PHE TRP VAL THR GLN SER ILE SEQRES 7 A 214 LYS GLU ARG LYS MET LEU ASN GLU HIS ASP PHE GLU VAL SEQRES 8 A 214 ARG GLY ASP VAL VAL ASN GLY ARG ASN HIS GLN GLY PRO SEQRES 9 A 214 LYS ARG ALA ARG GLU SER GLN ASP ARG LYS ILE PHE ARG SEQRES 10 A 214 GLY LEU GLU ILE CYS CYS TYR GLY PRO PHE THR ASN MET SEQRES 11 A 214 PRO THR ASP GLN LEU GLU TRP MET VAL GLN LEU CYS GLY SEQRES 12 A 214 ALA SER VAL VAL LYS GLU LEU SER SER PHE THR LEU GLY SEQRES 13 A 214 THR GLY VAL HIS PRO ILE VAL VAL VAL GLN PRO ASP ALA SEQRES 14 A 214 TRP THR GLU ASP ASN GLY PHE HIS ALA ILE GLY GLN MET SEQRES 15 A 214 CYS GLU ALA PRO VAL VAL THR PRO GLU TRP VAL LEU ASP SEQRES 16 A 214 SER VAL ALA LEU TYR GLN CYS GLN GLU LEU ASP THR TYR SEQRES 17 A 214 LEU ILE PRO GLN ILE PRO HET SO4 A 10 5 HET NI A 11 1 HETNAM SO4 SULFATE ION HETNAM NI NICKEL (II) ION FORMUL 2 SO4 O4 S 2- FORMUL 3 NI NI 2+ FORMUL 4 HOH *8(H2 O) HELIX 1 1 THR A 1658 HIS A 1673 1 16 HELIX 2 2 THR A 1700 GLY A 1710 1 11 HELIX 3 3 TYR A 1716 LYS A 1724 1 9 HELIX 4 4 ASN A 1730 GLU A 1735 1 6 HELIX 5 5 GLN A 1747 GLU A 1754 1 8 HELIX 6 6 PRO A 1776 CYS A 1787 1 12 HELIX 7 7 GLU A 1794 PHE A 1798 5 5 HELIX 8 8 GLN A 1811 TRP A 1815 5 5 HELIX 9 9 ALA A 1823 CYS A 1828 1 6 HELIX 10 10 PRO A 1835 LEU A 1844 1 10 HELIX 11 11 GLU A 1849 LEU A 1854 5 6 SHEET 1 A 4 THR A1675 LEU A1676 0 SHEET 2 A 4 SER A1651 SER A1655 1 N MET A1652 O THR A1675 SHEET 3 A 4 HIS A1686 MET A1689 1 O HIS A1686 N SER A1651 SHEET 4 A 4 TRP A1712 SER A1715 1 O VAL A1714 N MET A1689 SHEET 1 B 2 VAL A1696 CYS A1697 0 SHEET 2 B 2 GLY A1738 ASP A1739 1 O GLY A1738 N CYS A1697 SHEET 1 C 4 SER A1790 VAL A1791 0 SHEET 2 C 4 LEU A1764 CYS A1768 1 N ILE A1766 O SER A1790 SHEET 3 C 4 HIS A1805 VAL A1809 1 O ILE A1807 N CYS A1767 SHEET 4 C 4 VAL A1832 VAL A1833 1 O VAL A1833 N VAL A1808 LINK NI NI A 11 NE2 HIS A1805 1555 1555 2.51 SITE 1 AC1 5 HOH A 1 VAL A1654 SER A1655 GLY A1656 SITE 2 AC1 5 LYS A1702 SITE 1 AC2 4 HOH A 8 LYS A1671 HIS A1673 HIS A1805 CRYST1 114.950 114.950 121.940 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008699 0.005023 0.000000 0.00000 SCALE2 0.000000 0.010045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008200 0.00000