PDB Short entry for 3PZD HEADER MOTOR PROTEIN/APOPTOSIS 14-DEC-10 3PZD TITLE STRUCTURE OF THE MYOSIN X MYTH4-FERM/DCC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-X; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYTH4-FERM TANDEM; COMPND 5 SYNONYM: UNCONVENTIONAL MYOSIN-10; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NETRIN RECEPTOR DCC; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: P3 MOTIF; COMPND 11 SYNONYM: TUMOR SUPPRESSOR PROTEIN DCC; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0799, MYO10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: DCC; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PROTEIN COMPLEX, MYTH4 DOMAIN, FERM DOMAIN, CARGO BINDING, KEYWDS 2 MOTOR PROTEIN-APOPTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.WEI,J.YAN,L.PAN,M.ZHANG REVDAT 3 20-MAR-24 3PZD 1 REMARK SEQADV REVDAT 2 04-SEP-13 3PZD 1 JRNL VERSN REVDAT 1 23-FEB-11 3PZD 0 JRNL AUTH Z.WEI,J.YAN,Q.LU,L.PAN,M.ZHANG JRNL TITL CARGO RECOGNITION MECHANISM OF MYOSIN X REVEALED BY THE JRNL TITL 2 STRUCTURE OF ITS TAIL MYTH4-FERM TANDEM IN COMPLEX WITH THE JRNL TITL 3 DCC P3 DOMAIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 3572 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21321230 JRNL DOI 10.1073/PNAS.1016567108 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1243 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1694 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.778 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4319 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5849 ; 1.145 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 530 ; 5.625 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;36.714 ;24.560 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 750 ;17.668 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 653 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3239 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2666 ; 1.456 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4294 ; 2.552 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1653 ; 4.017 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1555 ; 5.872 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1501 A 1696 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9224 0.1997 13.4541 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.0086 REMARK 3 T33: 0.0106 T12: -0.0048 REMARK 3 T13: -0.0221 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 5.3376 L22: 3.4258 REMARK 3 L33: 1.9144 L12: -0.5145 REMARK 3 L13: 0.2661 L23: 0.3366 REMARK 3 S TENSOR REMARK 3 S11: -0.0729 S12: 0.0676 S13: 0.1283 REMARK 3 S21: -0.2681 S22: 0.0336 S23: 0.1248 REMARK 3 S31: -0.1053 S32: 0.0090 S33: 0.0393 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1697 A 1789 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0484 4.7247 17.3242 REMARK 3 T TENSOR REMARK 3 T11: 0.1254 T22: 0.1933 REMARK 3 T33: 0.1070 T12: -0.0339 REMARK 3 T13: 0.0369 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 7.1763 L22: 1.4316 REMARK 3 L33: 3.5511 L12: 1.6005 REMARK 3 L13: 2.3407 L23: 1.7538 REMARK 3 S TENSOR REMARK 3 S11: -0.1910 S12: 0.3873 S13: 0.2002 REMARK 3 S21: -0.0622 S22: 0.1695 S23: -0.1386 REMARK 3 S31: -0.2538 S32: 0.3807 S33: 0.0214 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1790 A 1952 REMARK 3 ORIGIN FOR THE GROUP (A): 58.5821 13.5653 15.1523 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.1462 REMARK 3 T33: 0.1414 T12: 0.0275 REMARK 3 T13: 0.0147 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 5.2404 L22: 1.1261 REMARK 3 L33: 4.9349 L12: -0.1729 REMARK 3 L13: -2.5883 L23: 0.7979 REMARK 3 S TENSOR REMARK 3 S11: 0.4333 S12: 0.0529 S13: 0.6459 REMARK 3 S21: 0.0730 S22: -0.1098 S23: -0.1168 REMARK 3 S31: -0.6564 S32: -0.1139 S33: -0.3234 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1953 A 2047 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8220 21.8984 34.4471 REMARK 3 T TENSOR REMARK 3 T11: 0.4262 T22: 0.3676 REMARK 3 T33: 0.3432 T12: 0.0025 REMARK 3 T13: 0.1392 T23: -0.1545 REMARK 3 L TENSOR REMARK 3 L11: 5.1364 L22: 6.4848 REMARK 3 L33: 5.7988 L12: -0.4380 REMARK 3 L13: -1.2687 L23: 0.8237 REMARK 3 S TENSOR REMARK 3 S11: 0.4062 S12: -0.2002 S13: 1.0485 REMARK 3 S21: 0.1962 S22: -0.0084 S23: 0.0346 REMARK 3 S31: -1.1786 S32: -0.3321 S33: -0.3979 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1407 B 1443 REMARK 3 ORIGIN FOR THE GROUP (A): 41.6597 13.4084 47.7273 REMARK 3 T TENSOR REMARK 3 T11: 0.4472 T22: 0.5376 REMARK 3 T33: 0.3543 T12: -0.0539 REMARK 3 T13: 0.0400 T23: -0.1695 REMARK 3 L TENSOR REMARK 3 L11: 3.8401 L22: 1.8164 REMARK 3 L33: 9.7333 L12: 1.7113 REMARK 3 L13: 5.2760 L23: 0.7842 REMARK 3 S TENSOR REMARK 3 S11: 0.4380 S12: -0.0820 S13: -0.5602 REMARK 3 S21: 0.0997 S22: 0.1027 S23: -0.3042 REMARK 3 S31: 0.6193 S32: -0.4536 S33: -0.5408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 3PZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24981 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : 0.46800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 10% GLYCEROL, HEPES REMARK 280 BUFFER, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.76400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1900 REMARK 465 SER A 1901 REMARK 465 GLN A 1902 REMARK 465 SER A 1903 REMARK 465 THR A 1904 REMARK 465 LYS A 1905 REMARK 465 THR A 1906 REMARK 465 GLN A 1907 REMARK 465 MET A 1908 REMARK 465 LEU A 1909 REMARK 465 GLU A 1964 REMARK 465 GLY A 1965 REMARK 465 GLY A 1966 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1731 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1736 CG CD OE1 OE2 REMARK 470 ARG A1739 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1858 CG CD OE1 NE2 REMARK 470 ASP A1910 CG OD1 OD2 REMARK 470 MET A1911 CG SD CE REMARK 470 TRP A1912 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A1912 CZ3 CH2 REMARK 470 ILE A1913 CG1 CG2 CD1 REMARK 470 LYS A1914 CG CD CE NZ REMARK 470 GLU A1937 CG CD OE1 OE2 REMARK 470 GLN A1969 CG CD OE1 NE2 REMARK 470 LYS A2011 CG CD CE NZ REMARK 470 GLU A2016 CG CD OE1 OE2 REMARK 470 LEU A2020 CG CD1 CD2 REMARK 470 ARG A2044 CG CD NE CZ NH1 NH2 REMARK 470 HIS B1408 CG ND1 CD2 CE1 NE2 REMARK 470 SER B1416 OG REMARK 470 LEU B1423 CG CD1 CD2 REMARK 470 GLU B1425 CG CD OE1 OE2 REMARK 470 GLN B1426 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A1557 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1581 62.48 -108.58 REMARK 500 LYS A1680 -116.66 -111.20 REMARK 500 HIS A1750 -68.06 -138.68 REMARK 500 ASP A1793 102.44 -162.71 REMARK 500 PRO A1850 132.53 -39.60 REMARK 500 CYS A1962 -74.44 -100.05 REMARK 500 ARG A1985 109.66 -49.09 REMARK 500 ASN A2008 69.37 21.49 REMARK 500 ASP A2015 118.59 -34.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 1747 ASN A 1748 149.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 DBREF 3PZD A 1503 2047 UNP Q9HD67 MYO10_HUMAN 1503 2047 DBREF 3PZD B 1408 1443 UNP P70211 DCC_MOUSE 1410 1445 SEQADV 3PZD GLU A 1501 UNP Q9HD67 EXPRESSION TAG SEQADV 3PZD PHE A 1502 UNP Q9HD67 EXPRESSION TAG SEQADV 3PZD A UNP Q9HD67 PHE 1871 DELETION SEQADV 3PZD A UNP Q9HD67 THR 1872 DELETION SEQADV 3PZD A UNP Q9HD67 PRO 1873 DELETION SEQADV 3PZD A UNP Q9HD67 CYS 1874 DELETION SEQADV 3PZD A UNP Q9HD67 GLU 1875 DELETION SEQADV 3PZD A UNP Q9HD67 ARG 1876 DELETION SEQADV 3PZD A UNP Q9HD67 LEU 1877 DELETION SEQADV 3PZD A UNP Q9HD67 GLU 1878 DELETION SEQADV 3PZD A UNP Q9HD67 LYS 1879 DELETION SEQADV 3PZD A UNP Q9HD67 ARG 1880 DELETION SEQADV 3PZD A UNP Q9HD67 ARG 1881 DELETION SEQADV 3PZD A UNP Q9HD67 THR 1882 DELETION SEQADV 3PZD A UNP Q9HD67 SER 1883 DELETION SEQADV 3PZD A UNP Q9HD67 PHE 1884 DELETION SEQADV 3PZD A UNP Q9HD67 LEU 1885 DELETION SEQADV 3PZD A UNP Q9HD67 GLU 1886 DELETION SEQADV 3PZD A UNP Q9HD67 GLY 1887 DELETION SEQADV 3PZD A UNP Q9HD67 THR 1888 DELETION SEQADV 3PZD A UNP Q9HD67 LEU 1889 DELETION SEQADV 3PZD A UNP Q9HD67 ARG 1890 DELETION SEQADV 3PZD A UNP Q9HD67 ARG 1891 DELETION SEQADV 3PZD A UNP Q9HD67 SER 1892 DELETION SEQADV 3PZD A UNP Q9HD67 PHE 1893 DELETION SEQADV 3PZD A UNP Q9HD67 ARG 1894 DELETION SEQADV 3PZD A UNP Q9HD67 THR 1895 DELETION SEQADV 3PZD A UNP Q9HD67 GLY 1896 DELETION SEQADV 3PZD A UNP Q9HD67 SER 1897 DELETION SEQADV 3PZD A UNP Q9HD67 VAL 1898 DELETION SEQADV 3PZD A UNP Q9HD67 VAL 1899 DELETION SEQADV 3PZD A UNP Q9HD67 ARG 1900 DELETION SEQADV 3PZD A UNP Q9HD67 GLN 1901 DELETION SEQADV 3PZD A UNP Q9HD67 LYS 1902 DELETION SEQADV 3PZD A UNP Q9HD67 VAL 1903 DELETION SEQADV 3PZD A UNP Q9HD67 GLU 1904 DELETION SEQADV 3PZD A UNP Q9HD67 GLU 1905 DELETION SEQADV 3PZD A UNP Q9HD67 GLU 1906 DELETION SEQRES 1 A 511 GLU PHE ASP THR PRO THR GLN GLN LEU ILE GLN ASP ILE SEQRES 2 A 511 LYS GLU ASN CYS LEU ASN SER ASP VAL VAL GLU GLN ILE SEQRES 3 A 511 TYR LYS ARG ASN PRO ILE LEU ARG TYR THR HIS HIS PRO SEQRES 4 A 511 LEU HIS SER PRO LEU LEU PRO LEU PRO TYR GLY ASP ILE SEQRES 5 A 511 ASN LEU ASN LEU LEU LYS ASP LYS GLY TYR THR THR LEU SEQRES 6 A 511 GLN ASP GLU ALA ILE LYS ILE PHE ASN SER LEU GLN GLN SEQRES 7 A 511 LEU GLU SER MET SER ASP PRO ILE PRO ILE ILE GLN GLY SEQRES 8 A 511 ILE LEU GLN THR GLY HIS ASP LEU ARG PRO LEU ARG ASP SEQRES 9 A 511 GLU LEU TYR CYS GLN LEU ILE LYS GLN THR ASN LYS VAL SEQRES 10 A 511 PRO HIS PRO GLY SER VAL GLY ASN LEU TYR SER TRP GLN SEQRES 11 A 511 ILE LEU THR CYS LEU SER CYS THR PHE LEU PRO SER ARG SEQRES 12 A 511 GLY ILE LEU LYS TYR LEU LYS PHE HIS LEU LYS ARG ILE SEQRES 13 A 511 ARG GLU GLN PHE PRO GLY SER GLU MET GLU LYS TYR ALA SEQRES 14 A 511 LEU PHE THR TYR GLU SER LEU LYS LYS THR LYS CYS ARG SEQRES 15 A 511 GLU PHE VAL PRO SER ARG ASP GLU ILE GLU ALA LEU ILE SEQRES 16 A 511 HIS ARG GLN GLU MET THR SER THR VAL TYR CYS HIS GLY SEQRES 17 A 511 GLY GLY SER CYS LYS ILE THR ILE ASN SER HIS THR THR SEQRES 18 A 511 ALA GLY GLU VAL VAL GLU LYS LEU ILE ARG GLY LEU ALA SEQRES 19 A 511 MET GLU ASP SER ARG ASN MET PHE ALA LEU PHE GLU TYR SEQRES 20 A 511 ASN GLY HIS VAL ASP LYS ALA ILE GLU SER ARG THR VAL SEQRES 21 A 511 VAL ALA ASP VAL LEU ALA LYS PHE GLU LYS LEU ALA ALA SEQRES 22 A 511 THR SER GLU VAL GLY ASP LEU PRO TRP LYS PHE TYR PHE SEQRES 23 A 511 LYS LEU TYR CYS PHE LEU ASP THR ASP ASN VAL PRO LYS SEQRES 24 A 511 ASP SER VAL GLU PHE ALA PHE MET PHE GLU GLN ALA HIS SEQRES 25 A 511 GLU ALA VAL ILE HIS GLY HIS HIS PRO ALA PRO GLU GLU SEQRES 26 A 511 ASN LEU GLN VAL LEU ALA ALA LEU ARG LEU GLN TYR LEU SEQRES 27 A 511 GLN GLY ASP TYR THR LEU HIS ALA ALA ILE PRO PRO LEU SEQRES 28 A 511 GLU GLU VAL TYR SER LEU GLN ARG LEU LYS ALA ARG ILE SEQRES 29 A 511 SER GLN SER THR LYS THR GLN MET LEU ASP MET TRP ILE SEQRES 30 A 511 LYS GLU GLU VAL SER SER ALA ARG ALA SER ILE ILE ASP SEQRES 31 A 511 LYS TRP ARG LYS PHE GLN GLY MET ASN GLN GLU GLN ALA SEQRES 32 A 511 MET ALA LYS TYR MET ALA LEU ILE LYS GLU TRP PRO GLY SEQRES 33 A 511 TYR GLY SER THR LEU PHE ASP VAL GLU CYS LYS GLU GLY SEQRES 34 A 511 GLY PHE PRO GLN GLU LEU TRP LEU GLY VAL SER ALA ASP SEQRES 35 A 511 ALA VAL SER VAL TYR LYS ARG GLY GLU GLY ARG PRO LEU SEQRES 36 A 511 GLU VAL PHE GLN TYR GLU HIS ILE LEU SER PHE GLY ALA SEQRES 37 A 511 PRO LEU ALA ASN THR TYR LYS ILE VAL VAL ASP GLU ARG SEQRES 38 A 511 GLU LEU LEU PHE GLU THR SER GLU VAL VAL ASP VAL ALA SEQRES 39 A 511 LYS LEU MET LYS ALA TYR ILE SER MET ILE VAL LYS LYS SEQRES 40 A 511 ARG TYR SER THR SEQRES 1 B 36 HIS LYS PRO THR GLU ASP PRO ALA SER VAL TYR GLU GLN SEQRES 2 B 36 ASP ASP LEU SER GLU GLN MET ALA SER LEU GLU GLY LEU SEQRES 3 B 36 MET LYS GLN LEU ASN ALA ILE THR GLY SER HET GOL A 1 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *101(H2 O) HELIX 1 1 THR A 1504 GLU A 1515 1 12 HELIX 2 2 ASN A 1519 ASN A 1530 1 12 HELIX 3 3 PRO A 1531 ARG A 1534 5 4 HELIX 4 4 ASN A 1553 LYS A 1560 1 8 HELIX 5 5 THR A 1564 GLU A 1580 1 17 HELIX 6 6 PRO A 1585 LEU A 1599 1 15 HELIX 7 7 PRO A 1601 THR A 1614 1 14 HELIX 8 8 SER A 1622 SER A 1636 1 15 HELIX 9 9 SER A 1642 PHE A 1660 1 19 HELIX 10 10 SER A 1663 LYS A 1677 1 15 HELIX 11 11 SER A 1687 HIS A 1696 1 10 HELIX 12 12 THR A 1721 LEU A 1733 1 13 HELIX 13 13 VAL A 1760 ALA A 1772 1 13 HELIX 14 14 SER A 1801 GLY A 1818 1 18 HELIX 15 15 PRO A 1823 GLY A 1840 1 18 HELIX 16 16 PRO A 1850 VAL A 1854 5 5 HELIX 17 17 LEU A 1857 ALA A 1862 1 6 HELIX 18 18 ASP A 1910 LYS A 1930 1 21 HELIX 19 19 ASN A 1935 LYS A 1948 1 14 HELIX 20 20 GLU A 2025 SER A 2046 1 22 HELIX 21 21 ASP B 1413 GLN B 1420 1 8 HELIX 22 22 ASP B 1422 GLY B 1442 1 21 SHEET 1 A 5 SER A1711 ILE A1716 0 SHEET 2 A 5 MET A1700 TYR A1705 -1 N VAL A1704 O CYS A1712 SHEET 3 A 5 LYS A1783 CYS A1790 1 O PHE A1784 N TYR A1705 SHEET 4 A 5 MET A1741 TYR A1747 -1 N MET A1741 O TYR A1789 SHEET 5 A 5 ASP A1752 ALA A1754 -1 O LYS A1753 N GLU A1746 SHEET 1 B 4 THR A1956 GLU A1961 0 SHEET 2 B 4 GLU A1970 VAL A1975 -1 O LEU A1973 N PHE A1958 SHEET 3 B 4 ALA A1979 LYS A1984 -1 O SER A1981 N GLY A1974 SHEET 4 B 4 GLU A1992 GLN A1995 -1 O PHE A1994 N VAL A1980 SHEET 1 C 3 ILE A1999 GLY A2003 0 SHEET 2 C 3 THR A2009 VAL A2014 -1 O LYS A2011 N GLY A2003 SHEET 3 C 3 ARG A2017 GLU A2022 -1 O PHE A2021 N TYR A2010 SITE 1 AC1 6 CYS A1706 HIS A1707 GLY A1708 ALA A1805 SITE 2 AC1 6 PHE A1806 GLU A1809 CRYST1 85.167 49.528 92.814 90.00 112.58 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011742 0.000000 0.004883 0.00000 SCALE2 0.000000 0.020191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011669 0.00000