PDB Short entry for 3Q1D HEADER LIGASE 17-DEC-10 3Q1D TITLE THE B-BOX DOMAIN OF TRIM54 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE MOTIF-CONTAINING PROTEIN 54; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B-BOX DOMAIN, UNP RESIDUES 122-168; COMPND 5 SYNONYM: MUSCLE-SPECIFIC RING FINGER PROTEIN, MURF, MUSCLE-SPECIFIC COMPND 6 RING FINGER PROTEIN 3, MURF-3, MURF3, RING FINGER PROTEIN 30; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MURF, MURF3, RNF30, TRIM54; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS ZINC-BINDING MOTIF, RING-LIKE FOLD, LIGASE, METAL-BINDING, MUSCLE KEYWDS 2 PROTEIN, NUCLEUS, UBL CONJUGATION PATHWAY, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,L.YERMEKBAYEVA,F.MACKENZIE,A.DONG,J.WEIGELT,C.BOUNTRA, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,S.DHE-PAGANON REVDAT 3 13-SEP-23 3Q1D 1 REMARK LINK REVDAT 2 02-FEB-11 3Q1D 1 HEADER REVDAT REVDAT 1 26-JAN-11 3Q1D 0 JRNL AUTH J.R.WALKER,L.YERMEKBAYEVA,F.MACKENZIE,A.DONG,J.WEIGELT, JRNL AUTH 2 C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH,S.DHE-PAGANON JRNL TITL THE B-BOX DOMAIN OF TRIM54 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 3297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 148 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 6 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.524 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 387 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 520 ; 1.417 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 48 ; 6.805 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ;36.411 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 68 ;13.624 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 59 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 277 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 242 ; 0.454 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 395 ; 0.875 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 145 ; 2.843 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 125 ; 3.584 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8677 8.5902 9.6691 REMARK 3 T TENSOR REMARK 3 T11: 0.1204 T22: 0.1004 REMARK 3 T33: 0.0771 T12: -0.0754 REMARK 3 T13: -0.0739 T23: 0.0638 REMARK 3 L TENSOR REMARK 3 L11: 29.9619 L22: 15.0728 REMARK 3 L33: 22.7087 L12: -10.8967 REMARK 3 L13: 10.7982 L23: -5.0377 REMARK 3 S TENSOR REMARK 3 S11: 0.5157 S12: -0.7940 S13: -1.2503 REMARK 3 S21: -0.1348 S22: 0.4258 S23: 0.3911 REMARK 3 S31: 1.3049 S32: -0.3697 S33: -0.9415 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0162 11.4292 3.5639 REMARK 3 T TENSOR REMARK 3 T11: 0.1079 T22: 0.2059 REMARK 3 T33: 0.1300 T12: -0.0436 REMARK 3 T13: -0.0859 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 16.3714 L22: 13.8175 REMARK 3 L33: 3.3621 L12: -9.1763 REMARK 3 L13: -1.6635 L23: -3.6247 REMARK 3 S TENSOR REMARK 3 S11: 0.2474 S12: 0.5132 S13: -1.0130 REMARK 3 S21: -0.4851 S22: -0.1549 S23: 0.5592 REMARK 3 S31: 0.3107 S32: -0.1847 S33: -0.0924 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2163 16.5820 9.1520 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.1633 REMARK 3 T33: 0.0488 T12: -0.0220 REMARK 3 T13: 0.0251 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 7.4752 L22: 6.6600 REMARK 3 L33: 4.4855 L12: -0.5072 REMARK 3 L13: -0.7907 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: -0.5503 S13: -0.4324 REMARK 3 S21: -0.4763 S22: 0.0266 S23: -0.3333 REMARK 3 S31: -0.1158 S32: -0.0227 S33: -0.0766 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1805 23.6783 14.7455 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.5044 REMARK 3 T33: 0.1146 T12: -0.0286 REMARK 3 T13: -0.0096 T23: -0.0894 REMARK 3 L TENSOR REMARK 3 L11: 3.5023 L22: 8.2582 REMARK 3 L33: 2.9627 L12: -2.1846 REMARK 3 L13: 1.1651 L23: -4.9403 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: -1.1021 S13: 0.1570 REMARK 3 S21: 0.4282 S22: -0.0395 S23: -0.2300 REMARK 3 S31: -0.2625 S32: 0.0641 S33: 0.1119 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8758 19.2250 4.3376 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.1273 REMARK 3 T33: 0.0251 T12: -0.0190 REMARK 3 T13: 0.0086 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 6.3319 L22: 8.6208 REMARK 3 L33: 8.2642 L12: -0.8829 REMARK 3 L13: 5.1653 L23: -3.5893 REMARK 3 S TENSOR REMARK 3 S11: 0.1693 S12: -0.2133 S13: -0.0414 REMARK 3 S21: -0.0381 S22: -0.0310 S23: 0.0595 REMARK 3 S31: 0.1957 S32: -0.0360 S33: -0.1383 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5702 23.6628 2.9841 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.1790 REMARK 3 T33: 0.1007 T12: 0.0538 REMARK 3 T13: 0.0014 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 3.5157 L22: 8.9338 REMARK 3 L33: 19.8874 L12: -0.7929 REMARK 3 L13: 0.6439 L23: 12.4115 REMARK 3 S TENSOR REMARK 3 S11: -0.1033 S12: -0.1269 S13: -0.0501 REMARK 3 S21: -0.1731 S22: -0.0916 S23: 0.2307 REMARK 3 S31: -0.4523 S32: -0.7319 S33: 0.1949 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7533 26.1620 7.6566 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.1885 REMARK 3 T33: 0.1638 T12: -0.0014 REMARK 3 T13: 0.0299 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 35.5361 L22: 13.5571 REMARK 3 L33: 2.4727 L12: -13.0259 REMARK 3 L13: -1.7172 L23: 5.2098 REMARK 3 S TENSOR REMARK 3 S11: 0.3835 S12: -0.2375 S13: 2.3241 REMARK 3 S21: -0.1558 S22: -0.4355 S23: -0.5509 REMARK 3 S31: -0.0235 S32: -0.2555 S33: 0.0520 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0250 13.8303 7.2466 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.1299 REMARK 3 T33: 0.0955 T12: -0.0242 REMARK 3 T13: -0.0184 T23: 0.0628 REMARK 3 L TENSOR REMARK 3 L11: 25.9028 L22: 5.3740 REMARK 3 L33: 18.2267 L12: 4.3338 REMARK 3 L13: -9.1789 L23: -3.7254 REMARK 3 S TENSOR REMARK 3 S11: 0.0854 S12: 0.1586 S13: -0.9727 REMARK 3 S21: -0.3027 S22: -0.3320 S23: -0.5637 REMARK 3 S31: 1.1365 S32: -0.0379 S33: 0.2466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000063071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3560 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 15.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DDT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM CITRATE, 0.1M HEPES PH REMARK 280 7.5, 5% MPD, 0.57 MICROMOLAR TRYPSIN, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.03133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.01567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.03133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.01567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.03133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 29.01567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 58.03133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.01567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 29.01567 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 127 CD OE1 OE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 126 SG REMARK 620 2 HIS A 129 ND1 110.4 REMARK 620 3 CYS A 146 SG 117.5 102.3 REMARK 620 4 CYS A 149 SG 105.6 102.6 117.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 138 SG REMARK 620 2 CYS A 141 SG 110.8 REMARK 620 3 HIS A 155 ND1 110.9 100.3 REMARK 620 4 CYS A 158 SG 102.5 109.5 122.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE PUT IN FOR CRYSTALLIZATION IS REMARK 999 MHHHHHHSSGRENLYFQGQESSRPLHSKAEQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCE REMARK 999 VAPLPTIYKRQK AND IN SITU PROTEOLYSIS HAS BEEN CARRIED OUT DURING REMARK 999 CRYSTALLIZATION DBREF 3Q1D A 122 168 UNP Q9BYV2 TRI54_HUMAN 122 168 SEQRES 1 A 47 GLN HIS LEU MET CYS GLU GLU HIS GLU GLU GLU LYS ILE SEQRES 2 A 47 ASN ILE TYR CYS LEU SER CYS GLU VAL PRO THR CYS SER SEQRES 3 A 47 LEU CYS LYS VAL PHE GLY ALA HIS LYS ASP CYS GLU VAL SEQRES 4 A 47 ALA PRO LEU PRO THR ILE TYR LYS HET ZN A 201 1 HET ZN A 202 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *32(H2 O) HELIX 1 1 SER A 147 PHE A 152 1 6 HELIX 2 2 PRO A 164 TYR A 167 5 4 SHEET 1 A 3 VAL A 143 CYS A 146 0 SHEET 2 A 3 ILE A 134 CYS A 138 -1 N CYS A 138 O VAL A 143 SHEET 3 A 3 VAL A 160 PRO A 162 -1 O ALA A 161 N TYR A 137 LINK SG CYS A 126 ZN ZN A 202 1555 1555 2.32 LINK ND1 HIS A 129 ZN ZN A 202 1555 1555 2.16 LINK SG CYS A 138 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 141 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 146 ZN ZN A 202 1555 1555 2.32 LINK SG CYS A 149 ZN ZN A 202 1555 1555 2.31 LINK ND1 HIS A 155 ZN ZN A 201 1555 1555 2.13 LINK SG CYS A 158 ZN ZN A 201 1555 1555 2.30 SITE 1 AC1 4 CYS A 138 CYS A 141 HIS A 155 CYS A 158 SITE 1 AC2 4 CYS A 126 HIS A 129 CYS A 146 CYS A 149 CRYST1 47.276 47.276 87.047 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021152 0.012212 0.000000 0.00000 SCALE2 0.000000 0.024425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011488 0.00000