PDB Short entry for 3Q2L HEADER CELL ADHESION 20-DEC-10 3Q2L TITLE MOUSE E-CADHERIN EC1-2 V81D MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: E-CADHERIN EC1-2 FRAGMENT, RESIDUES 157-369; COMPND 5 SYNONYM: ARC-1, EPITHELIAL CADHERIN, E-CADHERIN, UVOMORULIN, E- COMPND 6 CAD/CTF1, E-CAD/CTF2, E-CAD/CTF3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS BETA BARREL FOLD, EXTRACELLULAR CADHERIN (EC) DOMAIN, CELL-CELL KEYWDS 2 ADHESION MOLECULE, MEMBRANE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR O.J.HARRISON,X.JIN,L.SHAPIRO REVDAT 3 13-SEP-23 3Q2L 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3Q2L 1 REMARK REVDAT 1 23-FEB-11 3Q2L 0 JRNL AUTH O.J.HARRISON,X.JIN,S.HONG,F.BAHNA,G.AHLSEN,J.BRASCH,Y.WU, JRNL AUTH 2 J.VENDOME,K.FELSOVALYI,C.M.HAMPTON,R.B.TROYANOVSKY, JRNL AUTH 3 A.BEN-SHAUL,J.FRANK,S.M.TROYANOVSKY,L.SHAPIRO,B.HONIG JRNL TITL THE EXTRACELLULAR ARCHITECTURE OF ADHERENS JUNCTIONS JRNL TITL 2 REVEALED BY CRYSTAL STRUCTURES OF TYPE I CADHERINS. JRNL REF STRUCTURE V. 19 244 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21300292 JRNL DOI 10.1016/J.STR.2010.11.016 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 41130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2176 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2390 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.83000 REMARK 3 B22 (A**2) : -1.25000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3366 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4582 ; 1.768 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ;18.922 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;35.032 ;26.133 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;16.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2544 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2130 ; 0.937 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3486 ; 1.816 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1236 ; 2.983 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1096 ; 5.290 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3Q2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43500 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QVF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 85.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (V/V) PEG 400, 0.1M SODIUM ACETATE REMARK 280 PH4.6, 0.13M CACL2, CRYOPROTECTED BY INCREASING PEG 400 TO 30%, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 71.35400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 84.47400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 71.35400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 84.47400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 71.35400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.47400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 71.35400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 84.47400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 12 O HOH B 215 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 16 OE1 GLU B 16 2655 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 25 CB - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 ASP A 137 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 -73.86 -97.58 REMARK 500 ARG A 28 32.68 -90.50 REMARK 500 ALA A 43 -90.58 -119.73 REMARK 500 GLU A 156 34.28 -84.07 REMARK 500 LEU B 21 -64.44 -103.45 REMARK 500 ALA B 43 -75.84 -111.80 REMARK 500 GLU B 156 38.66 -81.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 25 SER A 26 140.53 REMARK 500 GLU A 31 THR A 32 148.65 REMARK 500 GLU B 16 PHE B 17 148.94 REMARK 500 THR B 176 SER B 177 -146.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE2 111.1 REMARK 620 3 GLU A 69 OE1 91.0 51.0 REMARK 620 4 ASP A 100 OD1 82.1 81.9 125.9 REMARK 620 5 GLN A 101 O 78.3 158.8 150.0 80.7 REMARK 620 6 ASP A 103 OD1 95.3 115.0 71.4 162.4 81.7 REMARK 620 7 ASP A 136 OD1 161.2 87.6 101.4 101.3 84.0 75.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 99.9 REMARK 620 3 GLU A 69 OE1 84.5 95.2 REMARK 620 4 ASP A 103 OD2 89.6 163.6 99.0 REMARK 620 5 HOH A 217 O 162.6 94.4 84.4 79.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 108.1 REMARK 620 3 ASP A 134 OD2 153.7 90.6 REMARK 620 4 ASP A 134 OD1 144.5 85.1 52.7 REMARK 620 5 ASP A 136 OD2 70.5 79.8 132.6 80.1 REMARK 620 6 ASN A 143 O 81.1 169.3 82.7 84.2 98.7 REMARK 620 7 ASP A 195 OD2 75.0 100.5 83.7 136.3 143.6 87.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE2 REMARK 620 2 GLU A 119 OE1 50.2 REMARK 620 3 ASP A 180 OD1 125.6 83.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE2 REMARK 620 2 GLU B 69 OE2 112.8 REMARK 620 3 GLU B 69 OE1 86.5 52.2 REMARK 620 4 ASP B 100 OD1 86.1 78.0 121.0 REMARK 620 5 GLN B 101 O 79.5 154.6 153.2 80.9 REMARK 620 6 ASP B 103 OD1 82.1 128.7 82.2 153.3 73.4 REMARK 620 7 ASP B 136 OD1 158.6 86.0 98.3 108.6 87.4 78.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE1 REMARK 620 2 ASP B 67 OD1 93.0 REMARK 620 3 GLU B 69 OE1 87.8 87.9 REMARK 620 4 ASP B 103 OD2 102.8 163.5 97.5 REMARK 620 5 HOH B 215 O 95.0 93.6 176.8 80.2 REMARK 620 6 HOH B 296 O 165.9 91.5 79.1 74.4 98.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 102 OD1 REMARK 620 2 ASN B 104 O 107.1 REMARK 620 3 ASP B 134 OD1 143.1 100.4 REMARK 620 4 ASP B 134 OD2 159.2 74.0 53.0 REMARK 620 5 ASP B 136 OD2 73.0 86.0 85.1 127.4 REMARK 620 6 ASN B 143 O 83.4 169.5 69.9 96.4 96.9 REMARK 620 7 ASP B 195 OD2 77.2 99.5 122.1 82.1 150.0 83.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 119 OE1 REMARK 620 2 ASP B 180 OD1 86.2 REMARK 620 3 GLU B 182 OE1 102.5 75.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q2N RELATED DB: PDB DBREF 3Q2L A 1 213 UNP P09803 CADH1_MOUSE 157 369 DBREF 3Q2L B 1 213 UNP P09803 CADH1_MOUSE 157 369 SEQADV 3Q2L ASP A 81 UNP P09803 VAL 237 ENGINEERED MUTATION SEQADV 3Q2L ASP B 81 UNP P09803 VAL 237 ENGINEERED MUTATION SEQRES 1 A 213 ASP TRP VAL ILE PRO PRO ILE SER CYS PRO GLU ASN GLU SEQRES 2 A 213 LYS GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE LYS SER SEQRES 3 A 213 ASN ARG ASP LYS GLU THR LYS VAL PHE TYR SER ILE THR SEQRES 4 A 213 GLY GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL PHE ILE SEQRES 5 A 213 ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR GLN PRO SEQRES 6 A 213 LEU ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU TYR SER SEQRES 7 A 213 HIS ALA ASP SER SER ASN GLY GLU ALA VAL GLU ASP PRO SEQRES 8 A 213 MET GLU ILE VAL ILE THR VAL THR ASP GLN ASN ASP ASN SEQRES 9 A 213 ARG PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SER VAL SEQRES 10 A 213 ALA GLU GLY ALA VAL PRO GLY THR SER VAL MET LYS VAL SEQRES 11 A 213 SER ALA THR ASP ALA ASP ASP ASP VAL ASN THR TYR ASN SEQRES 12 A 213 ALA ALA ILE ALA TYR THR ILE VAL SER GLN ASP PRO GLU SEQRES 13 A 213 LEU PRO HIS LYS ASN MET PHE THR VAL ASN ARG ASP THR SEQRES 14 A 213 GLY VAL ILE SER VAL LEU THR SER GLY LEU ASP ARG GLU SEQRES 15 A 213 SER TYR PRO THR TYR THR LEU VAL VAL GLN ALA ALA ASP SEQRES 16 A 213 LEU GLN GLY GLU GLY LEU SER THR THR ALA LYS ALA VAL SEQRES 17 A 213 ILE THR VAL LYS ASP SEQRES 1 B 213 ASP TRP VAL ILE PRO PRO ILE SER CYS PRO GLU ASN GLU SEQRES 2 B 213 LYS GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE LYS SER SEQRES 3 B 213 ASN ARG ASP LYS GLU THR LYS VAL PHE TYR SER ILE THR SEQRES 4 B 213 GLY GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL PHE ILE SEQRES 5 B 213 ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR GLN PRO SEQRES 6 B 213 LEU ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU TYR SER SEQRES 7 B 213 HIS ALA ASP SER SER ASN GLY GLU ALA VAL GLU ASP PRO SEQRES 8 B 213 MET GLU ILE VAL ILE THR VAL THR ASP GLN ASN ASP ASN SEQRES 9 B 213 ARG PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SER VAL SEQRES 10 B 213 ALA GLU GLY ALA VAL PRO GLY THR SER VAL MET LYS VAL SEQRES 11 B 213 SER ALA THR ASP ALA ASP ASP ASP VAL ASN THR TYR ASN SEQRES 12 B 213 ALA ALA ILE ALA TYR THR ILE VAL SER GLN ASP PRO GLU SEQRES 13 B 213 LEU PRO HIS LYS ASN MET PHE THR VAL ASN ARG ASP THR SEQRES 14 B 213 GLY VAL ILE SER VAL LEU THR SER GLY LEU ASP ARG GLU SEQRES 15 B 213 SER TYR PRO THR TYR THR LEU VAL VAL GLN ALA ALA ASP SEQRES 16 B 213 LEU GLN GLY GLU GLY LEU SER THR THR ALA LYS ALA VAL SEQRES 17 B 213 ILE THR VAL LYS ASP HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HET CA A 704 1 HET 1PE A 214 16 HET CA B 701 1 HET CA B 702 1 HET CA B 703 1 HET CA B 704 1 HET 1PE B 214 16 HETNAM CA CALCIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 CA 8(CA 2+) FORMUL 7 1PE 2(C10 H22 O6) FORMUL 13 HOH *301(H2 O) HELIX 1 1 LEU A 196 GLU A 199 5 4 HELIX 2 2 LEU B 196 GLU B 199 5 4 SHEET 1 A 2 TRP A 2 VAL A 3 0 SHEET 2 A 2 LYS B 25 SER B 26 -1 O LYS B 25 N VAL A 3 SHEET 1 B 4 ILE A 7 PRO A 10 0 SHEET 2 B 4 MET A 92 THR A 99 1 O THR A 97 N CYS A 9 SHEET 3 B 4 LYS A 73 ASP A 81 -1 N LEU A 76 O ILE A 94 SHEET 4 B 4 PHE A 35 GLY A 40 -1 N PHE A 35 O ASP A 81 SHEET 1 C 3 LYS A 19 GLN A 23 0 SHEET 2 C 3 TRP A 59 VAL A 62 -1 O LEU A 60 N VAL A 22 SHEET 3 C 3 PHE A 51 ILE A 53 -1 N ILE A 52 O LYS A 61 SHEET 1 D 2 LYS A 25 SER A 26 0 SHEET 2 D 2 TRP B 2 VAL B 3 -1 O VAL B 3 N LYS A 25 SHEET 1 E 2 GLU A 107 PHE A 108 0 SHEET 2 E 2 ALA A 132 THR A 133 -1 O THR A 133 N GLU A 107 SHEET 1 F 4 VAL A 112 ALA A 118 0 SHEET 2 F 4 SER A 202 LYS A 212 1 O LYS A 212 N VAL A 117 SHEET 3 F 4 THR A 186 ALA A 194 -1 N VAL A 191 O ALA A 205 SHEET 4 F 4 ALA A 147 ASP A 154 -1 N VAL A 151 O VAL A 190 SHEET 1 G 3 SER A 126 LYS A 129 0 SHEET 2 G 3 VAL A 171 VAL A 174 -1 O ILE A 172 N MET A 128 SHEET 3 G 3 PHE A 163 VAL A 165 -1 N THR A 164 O SER A 173 SHEET 1 H 4 ILE B 7 PRO B 10 0 SHEET 2 H 4 MET B 92 THR B 99 1 O VAL B 95 N ILE B 7 SHEET 3 H 4 LYS B 73 ASP B 81 -1 N LEU B 76 O ILE B 94 SHEET 4 H 4 PHE B 35 GLY B 40 -1 N PHE B 35 O ASP B 81 SHEET 1 I 3 LYS B 19 GLN B 23 0 SHEET 2 I 3 TRP B 59 VAL B 62 -1 O LEU B 60 N LEU B 21 SHEET 3 I 3 PHE B 51 ILE B 53 -1 N ILE B 52 O LYS B 61 SHEET 1 J 2 GLU B 107 PHE B 108 0 SHEET 2 J 2 ALA B 132 THR B 133 -1 O THR B 133 N GLU B 107 SHEET 1 K 4 VAL B 112 ALA B 118 0 SHEET 2 K 4 SER B 202 LYS B 212 1 O LYS B 206 N PHE B 113 SHEET 3 K 4 THR B 186 ALA B 194 -1 N LEU B 189 O ALA B 207 SHEET 4 K 4 ALA B 147 ASP B 154 -1 N VAL B 151 O VAL B 190 SHEET 1 L 3 SER B 126 LYS B 129 0 SHEET 2 L 3 VAL B 171 VAL B 174 -1 O ILE B 172 N MET B 128 SHEET 3 L 3 PHE B 163 VAL B 165 -1 N THR B 164 O SER B 173 LINK OE2 GLU A 11 CA CA A 701 1555 1555 2.35 LINK OE1 GLU A 11 CA CA A 703 1555 1555 2.36 LINK OD1 ASP A 67 CA CA A 703 1555 1555 2.04 LINK OE2 GLU A 69 CA CA A 701 1555 1555 2.30 LINK OE1 GLU A 69 CA CA A 701 1555 1555 2.68 LINK OE1 GLU A 69 CA CA A 703 1555 1555 2.22 LINK OD1 ASP A 100 CA CA A 701 1555 1555 2.25 LINK O GLN A 101 CA CA A 701 1555 1555 2.32 LINK OD1 ASN A 102 CA CA A 702 1555 1555 2.45 LINK OD1 ASP A 103 CA CA A 701 1555 1555 2.31 LINK OD2 ASP A 103 CA CA A 703 1555 1555 2.06 LINK O ASN A 104 CA CA A 702 1555 1555 2.23 LINK OE2 GLU A 119 CA CA A 704 1555 1555 2.34 LINK OE1 GLU A 119 CA CA A 704 1555 1555 2.72 LINK OD2 ASP A 134 CA CA A 702 1555 1555 2.15 LINK OD1 ASP A 134 CA CA A 702 1555 1555 2.67 LINK OD1 ASP A 136 CA CA A 701 1555 1555 2.49 LINK OD2 ASP A 136 CA CA A 702 1555 1555 2.38 LINK O ASN A 143 CA CA A 702 1555 1555 2.29 LINK OD1 ASP A 180 CA CA A 704 1555 1555 2.28 LINK OD2 ASP A 195 CA CA A 702 1555 1555 2.34 LINK O HOH A 217 CA CA A 703 1555 1555 2.55 LINK OE2 GLU B 11 CA CA B 701 1555 1555 2.54 LINK OE1 GLU B 11 CA CA B 703 1555 1555 2.38 LINK OD1 ASP B 67 CA CA B 703 1555 1555 2.26 LINK OE2 GLU B 69 CA CA B 701 1555 1555 2.43 LINK OE1 GLU B 69 CA CA B 701 1555 1555 2.66 LINK OE1 GLU B 69 CA CA B 703 1555 1555 2.31 LINK OD1 ASP B 100 CA CA B 701 1555 1555 2.16 LINK O GLN B 101 CA CA B 701 1555 1555 2.31 LINK OD1 ASN B 102 CA CA B 702 1555 1555 2.31 LINK OD1 ASP B 103 CA CA B 701 1555 1555 2.12 LINK OD2 ASP B 103 CA CA B 703 1555 1555 2.15 LINK O ASN B 104 CA CA B 702 1555 1555 2.20 LINK OE1 GLU B 119 CA CA B 704 1555 1555 2.47 LINK OD1 ASP B 134 CA CA B 702 1555 1555 2.06 LINK OD2 ASP B 134 CA CA B 702 1555 1555 2.61 LINK OD1 ASP B 136 CA CA B 701 1555 1555 2.59 LINK OD2 ASP B 136 CA CA B 702 1555 1555 2.44 LINK O ASN B 143 CA CA B 702 1555 1555 2.36 LINK OD1 ASP B 180 CA CA B 704 1555 1555 2.37 LINK OE1 GLU B 182 CA CA B 704 1555 1555 2.53 LINK OD2 ASP B 195 CA CA B 702 1555 1555 2.43 LINK O HOH B 215 CA CA B 703 1555 1555 2.61 LINK O HOH B 296 CA CA B 703 1555 1555 2.51 CISPEP 1 PHE A 17 PRO A 18 0 1.88 CISPEP 2 PRO A 46 PRO A 47 0 5.49 CISPEP 3 ASP A 154 PRO A 155 0 9.72 CISPEP 4 LEU A 157 PRO A 158 0 -1.44 CISPEP 5 PHE B 17 PRO B 18 0 -7.17 CISPEP 6 PRO B 46 PRO B 47 0 -3.52 CISPEP 7 ASP B 154 PRO B 155 0 5.81 CISPEP 8 LEU B 157 PRO B 158 0 0.48 SITE 1 AC1 6 GLU A 11 GLU A 69 ASP A 100 GLN A 101 SITE 2 AC1 6 ASP A 103 ASP A 136 SITE 1 AC2 6 ASN A 102 ASN A 104 ASP A 134 ASP A 136 SITE 2 AC2 6 ASN A 143 ASP A 195 SITE 1 AC3 5 GLU A 11 ASP A 67 GLU A 69 ASP A 103 SITE 2 AC3 5 HOH A 217 SITE 1 AC4 3 GLU A 119 ASP A 180 GLU A 182 SITE 1 AC5 2 LYS A 73 ILE A 75 SITE 1 AC6 6 GLU B 11 GLU B 69 ASP B 100 GLN B 101 SITE 2 AC6 6 ASP B 103 ASP B 136 SITE 1 AC7 6 ASN B 102 ASN B 104 ASP B 134 ASP B 136 SITE 2 AC7 6 ASN B 143 ASP B 195 SITE 1 AC8 6 GLU B 11 ASP B 67 GLU B 69 ASP B 103 SITE 2 AC8 6 HOH B 215 HOH B 296 SITE 1 AC9 3 GLU B 119 ASP B 180 GLU B 182 SITE 1 BC1 4 LYS B 73 ILE B 75 HOH B 304 HOH B 333 CRYST1 142.708 168.948 131.071 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007629 0.00000