PDB Short entry for 3Q30 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-DEC-10 3Q30 TITLE HUMAN SQUALENE SYNTHASE IN COMPLEX WITH (2R,3R)-2-CARBOXYMETHOXY-3-[5- TITLE 2 (2-NAPHTHALENYL)PENTYL]AMINOCARBONYL-3-[5-(2-NAPHTHALENYL) TITLE 3 PENTYLOXY]PROPIONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SQUALENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 31-370; COMPND 5 SYNONYM: SQS, SS, FPP:FPP FARNESYLTRANSFERASE, FARNESYL-DIPHOSPHATE COMPND 6 FARNESYLTRANSFERASE; COMPND 7 EC: 2.5.1.21; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDFT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPRENE BIOSYNTHESIS, LIPID SYNTHESIS, MULTIFUNCTIONAL ENZYME, KEYWDS 2 OXIDOREDUCTASE, STEROID BIOSYNTHESIS, STEROL BIOSYNTHESIS, KEYWDS 3 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.SUZUKI,H.SHIMIZU,S.KATAKURA,K.YAMAZAKI,N.HIGASHIHASHI,M.ICHIKAWA, AUTHOR 2 A.YOKOMIZO,M.ITOH,K.SUGITA,H.USUI REVDAT 3 01-NOV-23 3Q30 1 REMARK LINK REVDAT 2 08-NOV-17 3Q30 1 REMARK REVDAT 1 21-DEC-11 3Q30 0 JRNL AUTH M.ICHIKAWA,A.YOKOMIZO,M.ITOH,K.SUGITA,H.USUI,H.SHIMIZU, JRNL AUTH 2 M.SUZUKI,K.TERAYAMA,A.KANDA JRNL TITL DISCOVERY OF A NEW 2-AMINOBENZHYDROL TEMPLATE FOR HIGHLY JRNL TITL 2 POTENT SQUALENE SYNTHASE INHIBITORS JRNL REF BIOORG.MED.CHEM. V. 19 1930 2011 JRNL REFN ISSN 0968-0896 JRNL PMID 21353782 JRNL DOI 10.1016/J.BMC.2011.01.065 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1235 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2390 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.015 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2739 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3708 ; 1.469 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;37.716 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;14.782 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.026 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2061 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1647 ; 0.953 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2665 ; 1.627 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1092 ; 1.581 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1043 ; 2.379 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PARAMETERS FOR MASK CACLULATION REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ALTHOUGH ELECTRON DENSITY PEAK CORRESPONDING TO ARG52-PHE54 EXIST, REMARK 3 THIS PEPTIDE REGION CANNOT BE MODELED TO THE SHAPE OF OBSERVED REMARK 3 DENSITY. POSSIBLE CAUSE OF THIS FAILURE IS MULTIPLE CONFORMATION. REMARK 3 THERE IS A PLANER ELECTRON DENSITY PEAK POSSIBLY CORRESPONDING TO REMARK 3 THE INTRINSIC LIPID MOLECULE BETWEEN BOUND COMPOUND AND PHE 54. REMARK 3 ANY ATOMIC MODEL FOR THIS DENSITY HAS NOT NEEN BUILT. REMARK 4 REMARK 4 3Q30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.590 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.53 REMARK 200 R MERGE FOR SHELL (I) : 0.31100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EZF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEEDING METHOD, PH 5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.98650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.76300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.98650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.76300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 31 REMARK 465 ASP A 32 REMARK 465 GLN A 33 REMARK 465 ASP A 34 REMARK 465 SER A 35 REMARK 465 ARG A 52 REMARK 465 SER A 53 REMARK 465 PHE A 54 REMARK 465 GLN A 369 REMARK 465 ASN A 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 41 CE NZ REMARK 470 ARG A 66 CZ NH1 NH2 REMARK 470 ARG A 110 CZ NH1 NH2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 LYS A 241 CE NZ REMARK 470 LYS A 242 CE NZ REMARK 470 LYS A 315 CD CE NZ REMARK 470 LYS A 335 NZ REMARK 470 GLU A 343 OE1 OE2 REMARK 470 LYS A 358 NZ REMARK 470 SER A 364 OG REMARK 470 ARG A 367 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 548 O HOH A 589 1.98 REMARK 500 OE2 GLU A 116 O HOH A 559 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 539 O HOH A 589 2656 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 163 -82.85 -94.19 REMARK 500 ALA A 176 -45.49 -138.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 600 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 OD1 REMARK 620 2 GLU A 83 OE1 101.0 REMARK 620 3 ASP A 84 OD1 94.4 88.4 REMARK 620 4 HOH A 461 O 97.5 92.3 167.7 REMARK 620 5 HOH A 506 O 163.2 90.0 73.0 94.7 REMARK 620 6 D61 A 700 O43 87.8 171.2 91.0 86.4 81.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 OD2 REMARK 620 2 ASP A 84 OD2 86.0 REMARK 620 3 HOH A 599 O 170.9 85.0 REMARK 620 4 D61 A 700 O43 95.3 116.4 90.2 REMARK 620 5 D61 A 700 O41 92.6 91.8 86.0 151.1 REMARK 620 6 D61 A 700 O37 93.5 167.5 94.9 76.0 75.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D61 A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q2Z RELATED DB: PDB REMARK 900 RELATED ID: 3ASX RELATED DB: PDB DBREF 3Q30 A 31 370 UNP P37268 FDFT_HUMAN 31 370 SEQRES 1 A 340 MET ASP GLN ASP SER LEU SER SER SER LEU LYS THR CYS SEQRES 2 A 340 TYR LYS TYR LEU ASN GLN THR SER ARG SER PHE ALA ALA SEQRES 3 A 340 VAL ILE GLN ALA LEU ASP GLY GLU MET ARG ASN ALA VAL SEQRES 4 A 340 CYS ILE PHE TYR LEU VAL LEU ARG ALA LEU ASP THR LEU SEQRES 5 A 340 GLU ASP ASP MET THR ILE SER VAL GLU LYS LYS VAL PRO SEQRES 6 A 340 LEU LEU HIS ASN PHE HIS SER PHE LEU TYR GLN PRO ASP SEQRES 7 A 340 TRP ARG PHE MET GLU SER LYS GLU LYS ASP ARG GLN VAL SEQRES 8 A 340 LEU GLU ASP PHE PRO THR ILE SER LEU GLU PHE ARG ASN SEQRES 9 A 340 LEU ALA GLU LYS TYR GLN THR VAL ILE ALA ASP ILE CYS SEQRES 10 A 340 ARG ARG MET GLY ILE GLY MET ALA GLU PHE LEU ASP LYS SEQRES 11 A 340 HIS VAL THR SER GLU GLN GLU TRP ASP LYS TYR CYS HIS SEQRES 12 A 340 TYR VAL ALA GLY LEU VAL GLY ILE GLY LEU SER ARG LEU SEQRES 13 A 340 PHE SER ALA SER GLU PHE GLU ASP PRO LEU VAL GLY GLU SEQRES 14 A 340 ASP THR GLU ARG ALA ASN SER MET GLY LEU PHE LEU GLN SEQRES 15 A 340 LYS THR ASN ILE ILE ARG ASP TYR LEU GLU ASP GLN GLN SEQRES 16 A 340 GLY GLY ARG GLU PHE TRP PRO GLN GLU VAL TRP SER ARG SEQRES 17 A 340 TYR VAL LYS LYS LEU GLY ASP PHE ALA LYS PRO GLU ASN SEQRES 18 A 340 ILE ASP LEU ALA VAL GLN CYS LEU ASN GLU LEU ILE THR SEQRES 19 A 340 ASN ALA LEU HIS HIS ILE PRO ASP VAL ILE THR TYR LEU SEQRES 20 A 340 SER ARG LEU ARG ASN GLN SER VAL PHE ASN PHE CYS ALA SEQRES 21 A 340 ILE PRO GLN VAL MET ALA ILE ALA THR LEU ALA ALA CYS SEQRES 22 A 340 TYR ASN ASN GLN GLN VAL PHE LYS GLY ALA VAL LYS ILE SEQRES 23 A 340 ARG LYS GLY GLN ALA VAL THR LEU MET MET ASP ALA THR SEQRES 24 A 340 ASN MET PRO ALA VAL LYS ALA ILE ILE TYR GLN TYR MET SEQRES 25 A 340 GLU GLU ILE TYR HIS ARG ILE PRO ASP SER ASP PRO SER SEQRES 26 A 340 SER SER LYS THR ARG GLN ILE ILE SER THR ILE ARG THR SEQRES 27 A 340 GLN ASN HET MG A 600 1 HET MG A 601 1 HET D61 A 700 44 HET PO4 A 1 5 HETNAM MG MAGNESIUM ION HETNAM D61 (2R,3R)-2-(CARBOXYMETHOXY)-4-{[5-(NAPHTHALEN-2-YL) HETNAM 2 D61 PENTYL]AMINO}-3-{[5-(NAPHTHALEN-2-YL)PENTYL]OXY}-4- HETNAM 3 D61 OXOBUTANOIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 2 MG 2(MG 2+) FORMUL 4 D61 C36 H41 N O7 FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *264(H2 O) HELIX 1 1 SER A 37 SER A 51 1 15 HELIX 2 2 ALA A 55 ALA A 60 1 6 HELIX 3 3 GLU A 64 ASP A 85 1 22 HELIX 4 4 SER A 89 LEU A 104 1 16 HELIX 5 5 ARG A 119 ASP A 124 1 6 HELIX 6 6 ASP A 124 ASN A 134 1 11 HELIX 7 7 ALA A 136 LEU A 158 1 23 HELIX 8 8 SER A 164 ALA A 176 1 13 HELIX 9 9 ALA A 176 SER A 190 1 15 HELIX 10 10 ASP A 194 ASP A 200 1 7 HELIX 11 11 ASP A 200 ASP A 219 1 20 HELIX 12 12 ASP A 219 GLN A 225 1 7 HELIX 13 13 PRO A 232 SER A 237 1 6 HELIX 14 14 LYS A 242 GLU A 250 5 9 HELIX 15 15 ASN A 251 HIS A 268 1 18 HELIX 16 16 HIS A 269 ARG A 279 1 11 HELIX 17 17 ASN A 282 TYR A 304 1 23 HELIX 18 18 ASN A 306 LYS A 311 5 6 HELIX 19 19 ARG A 317 ALA A 328 1 12 HELIX 20 20 ASN A 330 ILE A 349 1 20 HELIX 21 21 SER A 355 THR A 368 1 14 LINK OD1 ASP A 80 MG MG A 600 1555 1555 2.04 LINK OD2 ASP A 80 MG MG A 601 1555 1555 2.06 LINK OE1 GLU A 83 MG MG A 600 1555 1555 2.05 LINK OD1 ASP A 84 MG MG A 600 1555 1555 2.33 LINK OD2 ASP A 84 MG MG A 601 1555 1555 2.09 LINK O HOH A 461 MG MG A 600 1555 1555 1.95 LINK O HOH A 506 MG MG A 600 1555 1555 2.26 LINK O HOH A 599 MG MG A 601 1555 1555 1.92 LINK MG MG A 600 O43 D61 A 700 1555 1555 2.20 LINK MG MG A 601 O43 D61 A 700 1555 1555 2.13 LINK MG MG A 601 O41 D61 A 700 1555 1555 2.15 LINK MG MG A 601 O37 D61 A 700 1555 1555 2.37 SITE 1 AC1 7 ASP A 80 GLU A 83 ASP A 84 HOH A 461 SITE 2 AC1 7 HOH A 506 MG A 601 D61 A 700 SITE 1 AC2 5 ASP A 80 ASP A 84 HOH A 599 MG A 600 SITE 2 AC2 5 D61 A 700 SITE 1 AC3 19 TYR A 73 ARG A 77 ASP A 80 ASP A 84 SITE 2 AC3 19 TYR A 171 VAL A 175 ALA A 176 VAL A 179 SITE 3 AC3 19 GLY A 180 LEU A 183 GLY A 208 GLN A 212 SITE 4 AC3 19 PHE A 288 HOH A 407 HOH A 461 HOH A 506 SITE 5 AC3 19 HOH A 599 MG A 600 MG A 601 SITE 1 AC4 7 HOH A 19 ARG A 148 ARG A 149 HIS A 173 SITE 2 AC4 7 TYR A 174 HOH A 376 HOH A 554 CRYST1 85.973 59.526 84.139 90.00 115.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011632 0.000000 0.005600 0.00000 SCALE2 0.000000 0.016799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013191 0.00000