PDB Short entry for 3Q7G HEADER SIGNALING PROTEIN 04-JAN-11 3Q7G TITLE CRYSTAL STRUCTURE OF E2 DOMAIN OF HUMAN AMYLOID PRECURSOR-LIKE PROTEIN TITLE 2 1 IN COMPLEX WITH SOS (SUCROSE OCTASULFATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: E2 DOMAIN; COMPND 5 SYNONYM: APLP, APLP-1, C30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APLP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS AMYLOID BETA PRECURSOR PROTEIN, E2 DOMAIN, ALZHEIMER'S DISEASE, KEYWDS 2 SIGNALING, HEPARIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.XUE,Y.HA REVDAT 4 29-JUL-20 3Q7G 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 07-SEP-11 3Q7G 1 JRNL REVDAT 2 27-JUL-11 3Q7G 1 JRNL REVDAT 1 22-JUN-11 3Q7G 0 JRNL AUTH Y.XUE,S.LEE,Y.WANG,Y.HA JRNL TITL CRYSTAL STRUCTURE OF THE E2 DOMAIN OF AMYLOID PRECURSOR JRNL TITL 2 PROTEIN-LIKE PROTEIN 1 IN COMPLEX WITH SUCROSE OCTASULFATE. JRNL REF J.BIOL.CHEM. V. 286 29748 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21715329 JRNL DOI 10.1074/JBC.M111.219659 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 21672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1464 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 165 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.33000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : 1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.770 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3258 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4465 ; 1.467 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 1.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;38.307 ;23.487 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;16.409 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.357 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2384 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1988 ; 7.163 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3146 ; 9.642 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1270 ;15.973 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1319 ;20.565 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 292 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3839 -22.7769 38.6486 REMARK 3 T TENSOR REMARK 3 T11: 0.1675 T22: 0.0366 REMARK 3 T33: 0.0628 T12: 0.0503 REMARK 3 T13: -0.0737 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.4705 L22: 1.5501 REMARK 3 L33: 1.7759 L12: -0.3151 REMARK 3 L13: 0.0394 L23: -1.9958 REMARK 3 S TENSOR REMARK 3 S11: -0.1907 S12: -0.0962 S13: 0.1402 REMARK 3 S21: 0.2669 S22: 0.1047 S23: -0.1414 REMARK 3 S31: -0.1498 S32: -0.1119 S33: 0.0860 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 494 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7911 -56.8992 39.4028 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.1226 REMARK 3 T33: 0.0572 T12: 0.0299 REMARK 3 T13: 0.0460 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 1.1660 L22: 1.0455 REMARK 3 L33: 1.4667 L12: 0.1609 REMARK 3 L13: -0.5677 L23: -1.4658 REMARK 3 S TENSOR REMARK 3 S11: -0.1455 S12: 0.1508 S13: -0.0911 REMARK 3 S21: 0.0182 S22: 0.1110 S23: -0.0181 REMARK 3 S31: 0.0825 S32: -0.0809 S33: 0.0345 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 292 B 379 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6572 -44.3275 21.2583 REMARK 3 T TENSOR REMARK 3 T11: 0.0558 T22: 0.1280 REMARK 3 T33: 0.0818 T12: 0.0240 REMARK 3 T13: -0.0079 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 2.5234 L22: 0.3693 REMARK 3 L33: 0.4542 L12: -0.8347 REMARK 3 L13: 1.1073 L23: -0.0843 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.0072 S13: 0.1515 REMARK 3 S21: -0.0297 S22: -0.0554 S23: -0.1402 REMARK 3 S31: -0.0119 S32: -0.0777 S33: 0.0491 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 380 B 486 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2863 -21.4789 19.3743 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.0670 REMARK 3 T33: 0.0919 T12: 0.0057 REMARK 3 T13: 0.0049 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 2.7530 L22: 0.9219 REMARK 3 L33: 0.9821 L12: 0.5220 REMARK 3 L13: 1.7691 L23: 0.5100 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: -0.0417 S13: 0.2260 REMARK 3 S21: 0.0840 S22: -0.2142 S23: 0.1710 REMARK 3 S31: 0.1124 S32: 0.0048 S33: 0.1424 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24869 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M BIS-TRIS, 0.2 M REMARK 280 LI2SO4, 25 MM ATP, PH 6.5, MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.96150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.11800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.96150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.11800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 281 REMARK 465 SER A 282 REMARK 465 HIS A 283 REMARK 465 MET A 284 REMARK 465 THR A 285 REMARK 465 PRO A 286 REMARK 465 THR A 287 REMARK 465 PRO A 288 REMARK 465 ARG A 289 REMARK 465 PRO A 290 REMARK 465 THR A 291 REMARK 465 GLY B 281 REMARK 465 SER B 282 REMARK 465 HIS B 283 REMARK 465 MET B 284 REMARK 465 THR B 285 REMARK 465 PRO B 286 REMARK 465 THR B 287 REMARK 465 PRO B 288 REMARK 465 ARG B 289 REMARK 465 PRO B 290 REMARK 465 THR B 291 REMARK 465 SER B 487 REMARK 465 GLU B 488 REMARK 465 HIS B 489 REMARK 465 LEU B 490 REMARK 465 GLY B 491 REMARK 465 PRO B 492 REMARK 465 SER B 493 REMARK 465 GLU B 494 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 292 CG OD1 OD2 REMARK 470 ASP A 295 CG OD1 OD2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 MET A 315 CG SD CE REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 ASN A 341 CG OD1 ND2 REMARK 470 LEU A 342 CG CD1 CD2 REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 GLU A 374 CG CD OE1 OE2 REMARK 470 GLN A 405 CG CD OE1 NE2 REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 VAL A 437 CG1 CG2 REMARK 470 GLU A 440 CG CD OE1 OE2 REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 GLN A 448 CG CD OE1 NE2 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 GLU A 458 CG CD OE1 OE2 REMARK 470 GLN A 469 CG CD OE1 NE2 REMARK 470 HIS A 472 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 475 CG CD OE1 NE2 REMARK 470 GLU A 476 CG CD OE1 OE2 REMARK 470 ARG A 478 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 482 CG CD OE1 NE2 REMARK 470 GLU A 483 CG CD OE1 OE2 REMARK 470 LEU A 485 CG CD1 CD2 REMARK 470 HIS A 486 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 488 CG CD OE1 OE2 REMARK 470 SER A 493 OG REMARK 470 GLU A 494 CG CD OE1 OE2 REMARK 470 ASP B 292 CG OD1 OD2 REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 ARG B 312 CG CD NE CZ NH1 NH2 REMARK 470 MET B 315 CG SD CE REMARK 470 GLU B 318 CG CD OE1 OE2 REMARK 470 ARG B 323 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 MET B 334 CG SD CE REMARK 470 LYS B 340 CG CD CE NZ REMARK 470 GLN B 348 CG CD OE1 NE2 REMARK 470 GLU B 352 CG CD OE1 OE2 REMARK 470 ARG B 369 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 402 CG OD1 OD2 REMARK 470 ARG B 408 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 421 CG CD OE1 NE2 REMARK 470 ARG B 425 CD NE CZ NH1 NH2 REMARK 470 GLU B 440 CG CD OE1 OE2 REMARK 470 LYS B 441 CG CD CE NZ REMARK 470 GLN B 444 CG CD OE1 NE2 REMARK 470 GLN B 469 CG CD OE1 NE2 REMARK 470 HIS B 472 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 475 CG CD OE1 NE2 REMARK 470 GLU B 476 CG CD OE1 OE2 REMARK 470 LEU B 477 CG CD1 CD2 REMARK 470 ARG B 478 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 482 CG CD OE1 NE2 REMARK 470 GLU B 483 CG CD OE1 OE2 REMARK 470 HIS B 486 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 489 129.87 -173.63 REMARK 500 SER A 493 -150.82 122.22 REMARK 500 ASP B 402 -77.53 -30.01 REMARK 500 ASP B 438 85.18 -154.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q7L RELATED DB: PDB DBREF 3Q7G A 285 494 UNP P51693 APLP1_HUMAN 285 494 DBREF 3Q7G B 285 494 UNP P51693 APLP1_HUMAN 285 494 SEQADV 3Q7G GLY A 281 UNP P51693 EXPRESSION TAG SEQADV 3Q7G SER A 282 UNP P51693 EXPRESSION TAG SEQADV 3Q7G HIS A 283 UNP P51693 EXPRESSION TAG SEQADV 3Q7G MET A 284 UNP P51693 EXPRESSION TAG SEQADV 3Q7G GLY B 281 UNP P51693 EXPRESSION TAG SEQADV 3Q7G SER B 282 UNP P51693 EXPRESSION TAG SEQADV 3Q7G HIS B 283 UNP P51693 EXPRESSION TAG SEQADV 3Q7G MET B 284 UNP P51693 EXPRESSION TAG SEQRES 1 A 214 GLY SER HIS MET THR PRO THR PRO ARG PRO THR ASP GLY SEQRES 2 A 214 VAL ASP ILE TYR PHE GLY MET PRO GLY GLU ILE SER GLU SEQRES 3 A 214 HIS GLU GLY PHE LEU ARG ALA LYS MET ASP LEU GLU GLU SEQRES 4 A 214 ARG ARG MET ARG GLN ILE ASN GLU VAL MET ARG GLU TRP SEQRES 5 A 214 ALA MET ALA ASP ASN GLN SER LYS ASN LEU PRO LYS ALA SEQRES 6 A 214 ASP ARG GLN ALA LEU ASN GLU HIS PHE GLN SER ILE LEU SEQRES 7 A 214 GLN THR LEU GLU GLU GLN VAL SER GLY GLU ARG GLN ARG SEQRES 8 A 214 LEU VAL GLU THR HIS ALA THR ARG VAL ILE ALA LEU ILE SEQRES 9 A 214 ASN ASP GLN ARG ARG ALA ALA LEU GLU GLY PHE LEU ALA SEQRES 10 A 214 ALA LEU GLN ALA ASP PRO PRO GLN ALA GLU ARG VAL LEU SEQRES 11 A 214 LEU ALA LEU ARG ARG TYR LEU ARG ALA GLU GLN LYS GLU SEQRES 12 A 214 GLN ARG HIS THR LEU ARG HIS TYR GLN HIS VAL ALA ALA SEQRES 13 A 214 VAL ASP PRO GLU LYS ALA GLN GLN MET ARG PHE GLN VAL SEQRES 14 A 214 HIS THR HIS LEU GLN VAL ILE GLU GLU ARG VAL ASN GLN SEQRES 15 A 214 SER LEU GLY LEU LEU ASP GLN ASN PRO HIS LEU ALA GLN SEQRES 16 A 214 GLU LEU ARG PRO GLN ILE GLN GLU LEU LEU HIS SER GLU SEQRES 17 A 214 HIS LEU GLY PRO SER GLU SEQRES 1 B 214 GLY SER HIS MET THR PRO THR PRO ARG PRO THR ASP GLY SEQRES 2 B 214 VAL ASP ILE TYR PHE GLY MET PRO GLY GLU ILE SER GLU SEQRES 3 B 214 HIS GLU GLY PHE LEU ARG ALA LYS MET ASP LEU GLU GLU SEQRES 4 B 214 ARG ARG MET ARG GLN ILE ASN GLU VAL MET ARG GLU TRP SEQRES 5 B 214 ALA MET ALA ASP ASN GLN SER LYS ASN LEU PRO LYS ALA SEQRES 6 B 214 ASP ARG GLN ALA LEU ASN GLU HIS PHE GLN SER ILE LEU SEQRES 7 B 214 GLN THR LEU GLU GLU GLN VAL SER GLY GLU ARG GLN ARG SEQRES 8 B 214 LEU VAL GLU THR HIS ALA THR ARG VAL ILE ALA LEU ILE SEQRES 9 B 214 ASN ASP GLN ARG ARG ALA ALA LEU GLU GLY PHE LEU ALA SEQRES 10 B 214 ALA LEU GLN ALA ASP PRO PRO GLN ALA GLU ARG VAL LEU SEQRES 11 B 214 LEU ALA LEU ARG ARG TYR LEU ARG ALA GLU GLN LYS GLU SEQRES 12 B 214 GLN ARG HIS THR LEU ARG HIS TYR GLN HIS VAL ALA ALA SEQRES 13 B 214 VAL ASP PRO GLU LYS ALA GLN GLN MET ARG PHE GLN VAL SEQRES 14 B 214 HIS THR HIS LEU GLN VAL ILE GLU GLU ARG VAL ASN GLN SEQRES 15 B 214 SER LEU GLY LEU LEU ASP GLN ASN PRO HIS LEU ALA GLN SEQRES 16 B 214 GLU LEU ARG PRO GLN ILE GLN GLU LEU LEU HIS SER GLU SEQRES 17 B 214 HIS LEU GLY PRO SER GLU HET GU4 C 1 27 HET YYJ C 2 28 HET GU4 D 1 27 HET YYJ D 2 28 HET GU4 E 1 27 HET YYJ E 2 28 HETNAM GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE HETNAM YYJ 1,3,4,6-TETRA-O-SULFO-BETA-D-FRUCTOFURANOSE FORMUL 3 GU4 3(C6 H12 O18 S4) FORMUL 3 YYJ 3(C6 H12 O18 S4) FORMUL 6 HOH *162(H2 O) HELIX 1 1 ASP A 292 GLY A 299 1 8 HELIX 2 2 SER A 305 GLN A 338 1 34 HELIX 3 3 PRO A 343 GLN A 400 1 58 HELIX 4 4 GLN A 405 ASP A 438 1 34 HELIX 5 5 ASP A 438 GLY A 465 1 28 HELIX 6 6 LEU A 466 GLN A 469 5 4 HELIX 7 7 ASN A 470 SER A 487 1 18 HELIX 8 8 ASP B 292 GLY B 299 1 8 HELIX 9 9 SER B 305 SER B 339 1 35 HELIX 10 10 PRO B 343 GLN B 400 1 58 HELIX 11 11 GLN B 405 ASP B 438 1 34 HELIX 12 12 ASP B 438 LEU B 466 1 29 HELIX 13 13 LEU B 467 GLN B 469 5 3 HELIX 14 14 ASN B 470 HIS B 486 1 17 LINK C1 GU4 C 1 O2 YYJ C 2 1555 1555 1.44 LINK C1 GU4 D 1 O2 YYJ D 2 1555 1555 1.44 LINK C1 GU4 E 1 O2 YYJ E 2 1555 1555 1.44 CRYST1 73.548 82.236 89.923 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011121 0.00000