PDB Short entry for 3Q7Q HEADER SIGNALING PROTEIN 05-JAN-11 3Q7Q TITLE CRYSTAL STRUCTURE OF RAD G-DOMAIN Q148A-GTP ANALOG COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN RAD; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: G-DOMAIN, RESIDUES 90-255; COMPND 5 SYNONYM: RAD1, RAS ASSOCIATED WITH DIABETES; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RRAD, RAD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS G-DOMAIN, G-PROTEIN, CAV2 BETA, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SASSON,L.NAVON-PERRY,J.A.HIRSCH REVDAT 3 13-SEP-23 3Q7Q 1 REMARK LINK REVDAT 2 26-OCT-11 3Q7Q 1 JRNL REVDAT 1 21-SEP-11 3Q7Q 0 JRNL AUTH Y.SASSON,L.NAVON-PERRY,D.HUPPERT,J.A.HIRSCH JRNL TITL RGK FAMILY G-DOMAIN:GTP ANALOG COMPLEX STRUCTURES AND JRNL TITL 2 NUCLEOTIDE-BINDING PROPERTIES. JRNL REF J.MOL.BIOL. V. 413 372 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21903096 JRNL DOI 10.1016/J.JMB.2011.08.017 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 11052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2329 - 4.1692 0.98 1678 195 0.1377 0.1620 REMARK 3 2 4.1692 - 3.3102 0.98 1714 186 0.1379 0.1778 REMARK 3 3 3.3102 - 2.8920 0.98 1690 176 0.1866 0.2180 REMARK 3 4 2.8920 - 2.6277 0.98 1703 190 0.2051 0.2775 REMARK 3 5 2.6277 - 2.4394 0.98 1633 186 0.2388 0.2552 REMARK 3 6 2.4394 - 2.3000 0.98 1541 160 0.2643 0.3339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 50.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10500 REMARK 3 B22 (A**2) : -1.10500 REMARK 3 B33 (A**2) : 2.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2283 REMARK 3 ANGLE : 0.970 3094 REMARK 3 CHIRALITY : 0.057 353 REMARK 3 PLANARITY : 0.004 386 REMARK 3 DIHEDRAL : 20.567 813 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 94:111 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 94:111 ) REMARK 3 ATOM PAIRS NUMBER : 120 REMARK 3 RMSD : 0.063 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 163:184 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 163:184 ) REMARK 3 ATOM PAIRS NUMBER : 167 REMARK 3 RMSD : 0.020 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 197:250 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 197:250 ) REMARK 3 ATOM PAIRS NUMBER : 415 REMARK 3 RMSD : 0.064 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (AUTO.MR) REMARK 200 STARTING MODEL: 3Q7P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8000, 0.1M MES, 0.2M CALCIUM REMARK 280 ACETATE, PH 5.7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.37033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.74067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 118 REMARK 465 GLU A 119 REMARK 465 ALA A 120 REMARK 465 GLU A 121 REMARK 465 ALA A 122 REMARK 465 ALA A 123 REMARK 465 GLY A 124 REMARK 465 GLN A 148 REMARK 465 ASP A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 ARG A 152 REMARK 465 TRP A 153 REMARK 465 LEU A 154 REMARK 465 PRO A 155 REMARK 465 GLY A 156 REMARK 465 HIS A 157 REMARK 465 CYS A 158 REMARK 465 MET A 159 REMARK 465 ALA A 160 REMARK 465 GLU B 115 REMARK 465 ASP B 116 REMARK 465 GLY B 117 REMARK 465 PRO B 118 REMARK 465 GLU B 119 REMARK 465 ALA B 120 REMARK 465 GLU B 121 REMARK 465 ALA B 122 REMARK 465 ALA B 123 REMARK 465 GLN B 148 REMARK 465 ASP B 149 REMARK 465 GLY B 150 REMARK 465 GLY B 151 REMARK 465 ARG B 152 REMARK 465 TRP B 153 REMARK 465 LEU B 154 REMARK 465 PRO B 155 REMARK 465 GLY B 156 REMARK 465 HIS B 157 REMARK 465 CYS B 158 REMARK 465 MET B 159 REMARK 465 ALA B 160 REMARK 465 ARG B 191 REMARK 465 GLN B 192 REMARK 465 THR B 193 REMARK 465 ASP B 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 126 OG1 CG2 REMARK 470 MET A 161 CG SD CE REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 THR A 193 OG1 CG2 REMARK 470 ASP A 194 CG OD1 OD2 REMARK 470 LEU A 253 CG CD1 CD2 REMARK 470 ARG B 109 CD NE CZ NH1 NH2 REMARK 470 VAL B 114 CG1 CG2 REMARK 470 THR B 126 OG1 CG2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 LEU B 183 CG CD1 CD2 REMARK 470 LEU B 253 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 209 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 209 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 209 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 209 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG B 209 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG B 209 NE - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 255 CA - C - O ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 114 91.85 -15.68 REMARK 500 GLU A 115 -131.27 -169.82 REMARK 500 ASP A 116 43.81 -168.25 REMARK 500 ALA A 190 -17.84 172.80 REMARK 500 THR A 193 -94.47 -71.27 REMARK 500 ASP A 194 44.29 25.92 REMARK 500 ASP A 195 87.92 -68.19 REMARK 500 LYS A 204 46.41 70.10 REMARK 500 LEU A 253 -19.41 -42.33 REMARK 500 VAL B 91 54.95 80.82 REMARK 500 ARG B 129 143.86 -174.37 REMARK 500 ILE B 145 -56.29 -22.63 REMARK 500 TRP B 146 3.23 -69.91 REMARK 500 ARG B 189 24.29 -70.07 REMARK 500 LYS B 204 46.30 70.35 REMARK 500 LEU B 253 -15.52 -47.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 256 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP A 1 O3G REMARK 620 2 GNP A 1 O2B 68.8 REMARK 620 3 HOH A 12 O 84.3 83.7 REMARK 620 4 SER A 105 OG 158.2 90.1 88.1 REMARK 620 5 GLU A 147 OE1 100.0 155.4 117.8 101.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 257 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 113 O REMARK 620 2 ASP A 128 O 156.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 256 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP B 1 O3G REMARK 620 2 GNP B 1 O2B 67.3 REMARK 620 3 HOH B 14 O 90.5 109.0 REMARK 620 4 HOH B 26 O 60.6 64.4 151.0 REMARK 620 5 SER B 105 OG 134.5 87.0 134.3 74.6 REMARK 620 6 GLU B 147 OE2 79.0 129.6 107.6 66.7 91.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 256 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DPX RELATED DB: PDB REMARK 900 RELATED ID: 3Q72 RELATED DB: PDB REMARK 900 RELATED ID: 3Q7P RELATED DB: PDB DBREF 3Q7Q A 90 255 UNP P55042 RAD_HUMAN 90 255 DBREF 3Q7Q B 90 255 UNP P55042 RAD_HUMAN 90 255 SEQRES 1 A 166 SER VAL TYR LYS VAL LEU LEU LEU GLY ALA PRO GLY VAL SEQRES 2 A 166 GLY LYS SER ALA LEU ALA ARG ILE PHE GLY GLY VAL GLU SEQRES 3 A 166 ASP GLY PRO GLU ALA GLU ALA ALA GLY HIS THR TYR ASP SEQRES 4 A 166 ARG SER ILE VAL VAL ASP GLY GLU GLU ALA SER LEU MET SEQRES 5 A 166 VAL TYR ASP ILE TRP GLU GLN ASP GLY GLY ARG TRP LEU SEQRES 6 A 166 PRO GLY HIS CYS MET ALA MET GLY ASP ALA TYR VAL ILE SEQRES 7 A 166 VAL TYR SER VAL THR ASP LYS GLY SER PHE GLU LYS ALA SEQRES 8 A 166 SER GLU LEU ARG VAL GLN LEU ARG ARG ALA ARG GLN THR SEQRES 9 A 166 ASP ASP VAL PRO ILE ILE LEU VAL GLY ASN LYS SER ASP SEQRES 10 A 166 LEU VAL ARG SER ARG GLU VAL SER VAL ASP GLU GLY ARG SEQRES 11 A 166 ALA CYS ALA VAL VAL PHE ASP CYS LYS PHE ILE GLU THR SEQRES 12 A 166 SER ALA ALA LEU HIS HIS ASN VAL GLN ALA LEU PHE GLU SEQRES 13 A 166 GLY VAL VAL ARG GLN ILE ARG LEU ARG ARG SEQRES 1 B 166 SER VAL TYR LYS VAL LEU LEU LEU GLY ALA PRO GLY VAL SEQRES 2 B 166 GLY LYS SER ALA LEU ALA ARG ILE PHE GLY GLY VAL GLU SEQRES 3 B 166 ASP GLY PRO GLU ALA GLU ALA ALA GLY HIS THR TYR ASP SEQRES 4 B 166 ARG SER ILE VAL VAL ASP GLY GLU GLU ALA SER LEU MET SEQRES 5 B 166 VAL TYR ASP ILE TRP GLU GLN ASP GLY GLY ARG TRP LEU SEQRES 6 B 166 PRO GLY HIS CYS MET ALA MET GLY ASP ALA TYR VAL ILE SEQRES 7 B 166 VAL TYR SER VAL THR ASP LYS GLY SER PHE GLU LYS ALA SEQRES 8 B 166 SER GLU LEU ARG VAL GLN LEU ARG ARG ALA ARG GLN THR SEQRES 9 B 166 ASP ASP VAL PRO ILE ILE LEU VAL GLY ASN LYS SER ASP SEQRES 10 B 166 LEU VAL ARG SER ARG GLU VAL SER VAL ASP GLU GLY ARG SEQRES 11 B 166 ALA CYS ALA VAL VAL PHE ASP CYS LYS PHE ILE GLU THR SEQRES 12 B 166 SER ALA ALA LEU HIS HIS ASN VAL GLN ALA LEU PHE GLU SEQRES 13 B 166 GLY VAL VAL ARG GLN ILE ARG LEU ARG ARG HET GNP A 1 32 HET MG A 256 1 HET CA A 257 1 HET GNP B 1 32 HET MG B 256 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 CA CA 2+ FORMUL 8 HOH *39(H2 O) HELIX 1 1 GLY A 103 GLY A 112 1 10 HELIX 2 2 ASP A 173 ARG A 189 1 17 HELIX 3 3 SER A 214 PHE A 225 1 12 HELIX 4 4 ASN A 239 LEU A 253 1 15 HELIX 5 5 GLY B 103 GLY B 113 1 11 HELIX 6 6 ASP B 173 ARG B 189 1 17 HELIX 7 7 SER B 214 PHE B 225 1 12 HELIX 8 8 ASN B 239 ARG B 254 1 16 SHEET 1 A 6 THR A 126 VAL A 133 0 SHEET 2 A 6 GLU A 136 TYR A 143 -1 O VAL A 142 N TYR A 127 SHEET 3 A 6 TYR A 92 GLY A 98 1 N VAL A 94 O TYR A 143 SHEET 4 A 6 ALA A 164 SER A 170 1 O VAL A 166 N LEU A 95 SHEET 5 A 6 ILE A 198 ASN A 203 1 O ASN A 203 N TYR A 169 SHEET 6 A 6 LYS A 228 GLU A 231 1 O LYS A 228 N LEU A 200 SHEET 1 B 6 THR B 126 VAL B 133 0 SHEET 2 B 6 GLU B 136 TYR B 143 -1 O LEU B 140 N ARG B 129 SHEET 3 B 6 TYR B 92 GLY B 98 1 N VAL B 94 O TYR B 143 SHEET 4 B 6 ALA B 164 SER B 170 1 O VAL B 166 N LEU B 97 SHEET 5 B 6 ILE B 198 ASN B 203 1 O ASN B 203 N TYR B 169 SHEET 6 B 6 LYS B 228 GLU B 231 1 O LYS B 228 N LEU B 200 LINK O3G GNP A 1 MG MG A 256 1555 1555 2.25 LINK O2B GNP A 1 MG MG A 256 1555 1555 2.49 LINK O HOH A 12 MG MG A 256 1555 1555 2.69 LINK OG SER A 105 MG MG A 256 1555 1555 2.42 LINK O GLY A 113 CA CA A 257 1555 1555 2.99 LINK O ASP A 128 CA CA A 257 1555 1555 2.94 LINK OE1 GLU A 147 MG MG A 256 1555 1555 2.67 LINK O3G GNP B 1 MG MG B 256 1555 1555 2.41 LINK O2B GNP B 1 MG MG B 256 1555 1555 2.60 LINK O HOH B 14 MG MG B 256 1555 1555 2.34 LINK O HOH B 26 MG MG B 256 1555 1555 2.80 LINK OG SER B 105 MG MG B 256 1555 1555 2.44 LINK OE2 GLU B 147 MG MG B 256 1555 1555 2.71 CISPEP 1 GLY A 112 GLY A 113 0 -1.03 CISPEP 2 GLN A 192 THR A 193 0 -3.89 SITE 1 AC1 16 HOH A 6 HOH A 8 PRO A 100 GLY A 101 SITE 2 AC1 16 VAL A 102 GLY A 103 LYS A 104 SER A 105 SITE 3 AC1 16 ALA A 106 ASN A 203 LYS A 204 ASP A 206 SITE 4 AC1 16 LEU A 207 ALA A 234 ALA A 235 MG A 256 SITE 1 AC2 4 GNP A 1 HOH A 12 SER A 105 GLU A 147 SITE 1 AC3 4 GLY A 113 GLU A 115 GLY A 117 ASP A 128 SITE 1 AC4 18 HOH B 26 PRO B 100 GLY B 101 VAL B 102 SITE 2 AC4 18 GLY B 103 LYS B 104 SER B 105 ALA B 106 SITE 3 AC4 18 GLU B 136 GLU B 147 ASN B 203 LYS B 204 SITE 4 AC4 18 ASP B 206 LEU B 207 SER B 233 ALA B 234 SITE 5 AC4 18 ALA B 235 MG B 256 SITE 1 AC5 6 GNP B 1 HOH B 14 HOH B 26 SER B 105 SITE 2 AC5 6 ASP B 144 GLU B 147 CRYST1 38.370 38.370 154.111 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026062 0.015047 0.000000 0.00000 SCALE2 0.000000 0.030094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006489 0.00000