PDB Short entry for 3QD4
HEADER    TRANSFERASE/TRANSFERASE INHIBITOR       17-JAN-11   3QD4              
TITLE     PHOSPHOINOSITIDE-DEPENDENT KINASE-1 (PDK1) KINASE DOMAIN WITH 1,1-    
TITLE    2 DIMETHYLETHYL{(3R,5R)-1-[2-AMINO-6-(3-AMINO-1H-INDAZOL-6-YL)-4-      
TITLE    3 PYRIMIDINYL]-5-METHYL-3-PIPERIDINYL}CARBAMATE                        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1;             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: KINASE DOMAIN, RESIDUES 48-359;                            
COMPND   5 SYNONYM: HPDK1;                                                      
COMPND   6 EC: 2.7.11.1;                                                        
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: PDK1, PDPK1;                                                   
SOURCE   6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;                            
SOURCE   7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;                             
SOURCE   8 EXPRESSION_SYSTEM_TAXID: 7108                                        
KEYWDS    KINASE DOMAIN, AGC KINASE, SIGNAL TRANDUCTION, ATP &                  
KEYWDS   2 PHOSPHOINOSITIDE, PHOSPHORYLATION ON S241, TRANSFERASE-TRANSFERASE   
KEYWDS   3 INHIBITOR COMPLEX                                                    
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.R.MEDINA,C.J.BECKER,C.W.BLACKLEDGE,C.DUQUENNE,Y.FENG,S.W.GRANT,     
AUTHOR   2 D.HEERDING,W.H.LI,W.H.MILLER,S.P.ROMERIL,D.SCHERZER,A.SHU,M.A.BOBKO, 
AUTHOR   3 A.R.CHADDERTON,M.DUMBLE,C.M.GRADINER,S.GILBERT,Q.LIU,S.K.RABINDRAN,  
AUTHOR   4 V.SUDAKIN,H.XIANG,P.G.BRADY,N.CAMPOBASSO,P.WARD,J.M.AXTEN            
REVDAT   4   21-FEB-24 3QD4    1       REMARK                                   
REVDAT   3   16-NOV-11 3QD4    1       VERSN  HETATM                            
REVDAT   2   30-MAR-11 3QD4    1       JRNL                                     
REVDAT   1   09-MAR-11 3QD4    0                                                
JRNL        AUTH   J.R.MEDINA,C.J.BECKER,C.W.BLACKLEDGE,C.DUQUENNE,Y.FENG,      
JRNL        AUTH 2 S.W.GRANT,D.HEERDING,W.H.LI,W.H.MILLER,S.P.ROMERIL,          
JRNL        AUTH 3 D.SCHERZER,A.SHU,M.A.BOBKO,A.R.CHADDERTON,M.DUMBLE,          
JRNL        AUTH 4 C.M.GARDINER,S.GILBERT,Q.LIU,S.K.RABINDRAN,V.SUDAKIN,        
JRNL        AUTH 5 H.XIANG,P.G.BRADY,N.CAMPOBASSO,P.WARD,J.M.AXTEN              
JRNL        TITL   STRUCTURE-BASED DESIGN OF POTENT AND SELECTIVE               
JRNL        TITL 2 3-PHOSPHOINOSITIDE-DEPENDENT KINASE-1 (PDK1) INHIBITORS.     
JRNL        REF    J.MED.CHEM.                   V.  54  1871 2011              
JRNL        REFN                   ISSN 0022-2623                               
JRNL        PMID   21341675                                                     
JRNL        DOI    10.1021/JM101527U                                            
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   J.R.MEDINA,C.W.BLACKLEDGE,D.A.HEERDING,N.CAMPOBASSO,P.WARD,  
REMARK   1  AUTH 2 J.BRIAND,L.WRIGHT,J.M.AXTEN                                  
REMARK   1  TITL   AMINOINDAZOLE PDK1 INHIBITORS: A CASE STUDY IN               
REMARK   1  TITL 2 FRAGMENT-BASED DRUG DISCOVERY                                
REMARK   1  REF    ACS MED. CHEM. LETT.          V.   1   439 2010              
REMARK   1  REFN                   ISSN 1948-5875                               
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.30 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.5_2                                         
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 29.86                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.050                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 95.3                           
REMARK   3   NUMBER OF REFLECTIONS             : 17921                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.199                           
REMARK   3   R VALUE            (WORKING SET) : 0.194                           
REMARK   3   FREE R VALUE                     : 0.244                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.020                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 1795                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 29.8620 -  5.3983    0.99     1352   152  0.1993 0.2180        
REMARK   3     2  5.3983 -  4.2888    0.99     1307   146  0.1639 0.2013        
REMARK   3     3  4.2888 -  3.7479    0.99     1315   146  0.1591 0.2167        
REMARK   3     4  3.7479 -  3.4057    0.99     1282   140  0.1939 0.2378        
REMARK   3     5  3.4057 -  3.1619    0.98     1268   138  0.2095 0.2662        
REMARK   3     6  3.1619 -  2.9757    0.97     1264   141  0.2132 0.2847        
REMARK   3     7  2.9757 -  2.8268    0.96     1216   136  0.2099 0.2603        
REMARK   3     8  2.8268 -  2.7038    0.96     1258   139  0.2131 0.2698        
REMARK   3     9  2.7038 -  2.5998    0.93     1190   133  0.2078 0.2687        
REMARK   3    10  2.5998 -  2.5101    0.93     1195   135  0.2144 0.2736        
REMARK   3    11  2.5101 -  2.4317    0.92     1210   129  0.2125 0.2668        
REMARK   3    12  2.4317 -  2.3622    0.89     1123   121  0.2083 0.3141        
REMARK   3    13  2.3622 -  2.3000    0.89     1146   139  0.2319 0.3230        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.35                                          
REMARK   3   B_SOL              : 33.34                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.280            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL             
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 39.77                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.08210                                             
REMARK   3    B22 (A**2) : -0.08210                                             
REMARK   3    B33 (A**2) : 0.16430                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.008           2340                                  
REMARK   3   ANGLE     :  1.218           3166                                  
REMARK   3   CHIRALITY :  0.089            344                                  
REMARK   3   PLANARITY :  0.004            403                                  
REMARK   3   DIHEDRAL  : 16.356            860                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3QD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-11.                  
REMARK 100 THE DEPOSITION ID IS D_1000063493.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 12-OCT-09                          
REMARK 200  TEMPERATURE           (KELVIN) : 110                                
REMARK 200  PH                             : 9                                  
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 21-ID-G                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97872                            
REMARK 200  MONOCHROMATOR                  : DIAMOND                            
REMARK 200  OPTICS                         : DIAMOND                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 18792                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.300                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 30.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 7.100                              
REMARK 200  R MERGE                    (I) : 0.07800                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 9.3000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.38                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 6.50                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.58200                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: NULL                                                  
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 58.19                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9-2 M AMMONIUM SULFATE,0.1 M TRIS PH   
REMARK 280  9. AND 5MM ATP; 15-30% GLYCEROL PLUS MOTHER LIQUOR MIXED WITH       
REMARK 280  INHIBITOR SERVED AS THE CRYO-PROTECTANT BEFORE BEING FROZEN IN      
REMARK 280  LIQUID NITROGEN, VAPOR DIFFUSION. SITTING DROP, TEMPERATURE 293K,   
REMARK 280  VAPOR DIFFUSION, SITTING DROP                                       
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+2/3                                            
REMARK 290       3555   -X+Y,-X,Z+1/3                                           
REMARK 290       4555   Y,X,-Z                                                  
REMARK 290       5555   X-Y,-Y,-Z+1/3                                           
REMARK 290       6555   -X,-X+Y,-Z+2/3                                          
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       31.34467            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       15.67233            
REMARK 290   SMTRY1   4 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   5  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       15.67233            
REMARK 290   SMTRY1   6 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       31.34467            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A   2  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A    48                                                      
REMARK 465     PRO A    49                                                      
REMARK 465     ALA A    50                                                      
REMARK 465     MET A    51                                                      
REMARK 465     ASP A    52                                                      
REMARK 465     GLY A    53                                                      
REMARK 465     THR A    54                                                      
REMARK 465     ALA A    55                                                      
REMARK 465     ALA A    56                                                      
REMARK 465     GLU A    57                                                      
REMARK 465     PRO A    58                                                      
REMARK 465     ARG A    59                                                      
REMARK 465     PRO A    60                                                      
REMARK 465     GLY A    61                                                      
REMARK 465     ALA A    62                                                      
REMARK 465     GLY A    63                                                      
REMARK 465     SER A    64                                                      
REMARK 465     LEU A    65                                                      
REMARK 465     GLN A    66                                                      
REMARK 465     HIS A    67                                                      
REMARK 465     ALA A    68                                                      
REMARK 465     GLN A    69                                                      
REMARK 465     PRO A    70                                                      
REMARK 465     PRO A   232                                                      
REMARK 465     GLU A   233                                                      
REMARK 465     SER A   234                                                      
REMARK 465     LYS A   235                                                      
REMARK 465     GLN A   236                                                      
REMARK 465     ALA A   237                                                      
REMARK 465     ARG A   238                                                      
REMARK 465     ALA A   239                                                      
REMARK 465     ASN A   240                                                      
REMARK 465     SEP A   241                                                      
REMARK 465     PHE A   242                                                      
REMARK 465     VAL A   243                                                      
REMARK 465     THR A   359                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLN A  73    CG   CD   OE1  NE2                                  
REMARK 470     ARG A  75    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU A 303    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 304    CG   CD   CE   NZ                                   
REMARK 470     GLU A 348    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 357    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A 151     -167.07   -113.42                                   
REMARK 500    ARG A 204       -7.40     76.33                                   
REMARK 500    ASP A 205       36.86   -148.50                                   
REMARK 500    ASP A 223       75.84     72.99                                   
REMARK 500    GLU A 256      -29.70    169.33                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1                   
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3NUN   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3NUS   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3NUU   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3NUY   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3QCQ   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3QCS   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3QCX   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3QCY   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3QD0   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3QD3   RELATED DB: PDB                                   
DBREF  3QD4 A   48   359  UNP    O15530   PDPK1_HUMAN     48    359             
SEQRES   1 A  312  GLY PRO ALA MET ASP GLY THR ALA ALA GLU PRO ARG PRO          
SEQRES   2 A  312  GLY ALA GLY SER LEU GLN HIS ALA GLN PRO PRO PRO GLN          
SEQRES   3 A  312  PRO ARG LYS LYS ARG PRO GLU ASP PHE LYS PHE GLY LYS          
SEQRES   4 A  312  ILE LEU GLY GLU GLY SER PHE SER THR VAL VAL LEU ALA          
SEQRES   5 A  312  ARG GLU LEU ALA THR SER ARG GLU TYR ALA ILE LYS ILE          
SEQRES   6 A  312  LEU GLU LYS ARG HIS ILE ILE LYS GLU ASN LYS VAL PRO          
SEQRES   7 A  312  TYR VAL THR ARG GLU ARG ASP VAL MET SER ARG LEU ASP          
SEQRES   8 A  312  HIS PRO PHE PHE VAL LYS LEU TYR PHE THR PHE GLN ASP          
SEQRES   9 A  312  ASP GLU LYS LEU TYR PHE GLY LEU SER TYR ALA LYS ASN          
SEQRES  10 A  312  GLY GLU LEU LEU LYS TYR ILE ARG LYS ILE GLY SER PHE          
SEQRES  11 A  312  ASP GLU THR CYS THR ARG PHE TYR THR ALA GLU ILE VAL          
SEQRES  12 A  312  SER ALA LEU GLU TYR LEU HIS GLY LYS GLY ILE ILE HIS          
SEQRES  13 A  312  ARG ASP LEU LYS PRO GLU ASN ILE LEU LEU ASN GLU ASP          
SEQRES  14 A  312  MET HIS ILE GLN ILE THR ASP PHE GLY THR ALA LYS VAL          
SEQRES  15 A  312  LEU SER PRO GLU SER LYS GLN ALA ARG ALA ASN SEP PHE          
SEQRES  16 A  312  VAL GLY THR ALA GLN TYR VAL SER PRO GLU LEU LEU THR          
SEQRES  17 A  312  GLU LYS SER ALA CYS LYS SER SER ASP LEU TRP ALA LEU          
SEQRES  18 A  312  GLY CYS ILE ILE TYR GLN LEU VAL ALA GLY LEU PRO PRO          
SEQRES  19 A  312  PHE ARG ALA GLY ASN GLU TYR LEU ILE PHE GLN LYS ILE          
SEQRES  20 A  312  ILE LYS LEU GLU TYR ASP PHE PRO GLU LYS PHE PHE PRO          
SEQRES  21 A  312  LYS ALA ARG ASP LEU VAL GLU LYS LEU LEU VAL LEU ASP          
SEQRES  22 A  312  ALA THR LYS ARG LEU GLY CYS GLU GLU MET GLU GLY TYR          
SEQRES  23 A  312  GLY PRO LEU LYS ALA HIS PRO PHE PHE GLU SER VAL THR          
SEQRES  24 A  312  TRP GLU ASN LEU HIS GLN GLN THR PRO PRO LYS LEU THR          
HET    3Q6  A 360      32                                                       
HET    SO4  A   1       5                                                       
HETNAM     3Q6 TERT-BUTYL {(3R,5R)-1-[2-AMINO-6-(3-AMINO-2H-INDAZOL-6-          
HETNAM   2 3Q6  YL)PYRIMIDIN-4-YL]-5-METHYLPIPERIDIN-3-YL}CARBAMATE             
HETNAM     SO4 SULFATE ION                                                      
FORMUL   2  3Q6    C22 H30 N8 O2                                                
FORMUL   3  SO4    O4 S 2-                                                      
FORMUL   4  HOH   *26(H2 O)                                                     
HELIX    1   1 ARG A   78  GLU A   80  5                                   3    
HELIX    2   2 LYS A  115  GLU A  121  1                                   7    
HELIX    3   3 LYS A  123  LEU A  137  1                                  15    
HELIX    4   4 GLU A  166  GLY A  175  1                                  10    
HELIX    5   5 ASP A  178  LYS A  199  1                                  22    
HELIX    6   6 THR A  245  VAL A  249  5                                   5    
HELIX    7   7 SER A  250  LEU A  254  5                                   5    
HELIX    8   8 CYS A  260  GLY A  278  1                                  19    
HELIX    9   9 ASN A  286  LEU A  297  1                                  12    
HELIX   10  10 PHE A  306  LEU A  317  1                                  12    
HELIX   11  11 ASP A  320  ARG A  324  5                                   5    
HELIX   12  12 CYS A  327  GLU A  331  5                                   5    
HELIX   13  13 GLY A  332  ALA A  338  1                                   7    
HELIX   14  14 HIS A  339  GLU A  343  5                                   5    
HELIX   15  15 ASN A  349  GLN A  353  5                                   5    
SHEET    1   A 5 PHE A  82  GLU A  90  0                                        
SHEET    2   A 5 THR A  95  GLU A 101 -1  O  VAL A  96   N  LEU A  88           
SHEET    3   A 5 GLU A 107  GLU A 114 -1  O  ILE A 112   N  THR A  95           
SHEET    4   A 5 LYS A 154  LEU A 159 -1  O  LEU A 155   N  LEU A 113           
SHEET    5   A 5 LEU A 145  GLN A 150 -1  N  PHE A 147   O  GLY A 158           
SHEET    1   B 2 ILE A 201  ILE A 202  0                                        
SHEET    2   B 2 LYS A 228  VAL A 229 -1  O  LYS A 228   N  ILE A 202           
SHEET    1   C 2 ILE A 211  LEU A 213  0                                        
SHEET    2   C 2 ILE A 219  ILE A 221 -1  O  GLN A 220   N  LEU A 212           
SITE     1 AC1  2 ARG A 106  HIS A 351                                          
CRYST1  124.315  124.315   47.017  90.00  90.00 120.00 P 32 2 1      6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.008044  0.004644  0.000000        0.00000                         
SCALE2      0.000000  0.009289  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.021269        0.00000