PDB Short entry for 3QDZ HEADER HYDROLASE/HYDROLASE RECEPTOR 19-JAN-11 3QDZ TITLE CRYSTAL STRUCTURE OF THE HUMAN THROMBIN MUTANT D102N IN COMPLEX WITH TITLE 2 THE EXTRACELLULAR FRAGMENT OF HUMAN PAR4. COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 5 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 6 CHAIN; COMPND 7 EC: 3.4.21.5; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 11 CHAIN: B, D; COMPND 12 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 13 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 14 CHAIN; COMPND 15 EC: 3.4.21.5; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: PROTEINASE-ACTIVATED RECEPTOR 4; COMPND 20 CHAIN: E, F; COMPND 21 SYNONYM: PAR-4, COAGULATION FACTOR II RECEPTOR-LIKE 3, THROMBIN COMPND 22 RECEPTOR-LIKE 3; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BHK; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: F2; SOURCE 14 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: BHK; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: F2RL3, PAR4; SOURCE 22 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: BHK KEYWDS SERINE PROTEASE, PROTEIN FUNCTION, PROTEASE-ACTIVATED RECEPTORS, KEYWDS 2 HYDROLASE-HYDROLASE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GANDHI,Z.CHEN,E.APPELBAUM,F.ZAPATA,E.DI CERA REVDAT 2 13-SEP-23 3QDZ 1 SEQADV REVDAT 1 29-JUN-11 3QDZ 0 JRNL AUTH P.S.GANDHI,Z.CHEN,E.APPELBAUM,F.ZAPATA,E.DI CERA JRNL TITL STRUCTURAL BASIS OF THROMBIN-PROTEASE-RECEPTOR INTERACTIONS JRNL REF IUBMB LIFE V. 63 375 2011 JRNL REFN ISSN 1521-6543 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.O.PINEDA,C.J.CARRELL,L.A.BUSH,S.PRASAD,S.CACCIA,Z.W.CHEN, REMARK 1 AUTH 2 F.S.MATHEWS,E.DI CERA REMARK 1 TITL MOLECULAR DISSECTION OF NA+ BINDING TO THROMBIN. REMARK 1 REF J.BIOL.CHEM. V. 279 31842 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15152000 REMARK 1 DOI 10.1074/JBC.M401756200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 14939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.304 REMARK 3 FREE R VALUE : 0.364 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 734 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1633 REMARK 3 BIN R VALUE (WORKING SET) : 0.5500 REMARK 3 BIN FREE R VALUE : 0.5910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 84 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.064 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4677 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM SIGMAA (A) : 1.63 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.040 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : APS 14-BM-C REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16395 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP FROM CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1SHH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M TRI-SODIUM CITRATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.19500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.19500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.70700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.43800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.70700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.43800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.19500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.70700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.43800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.19500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.70700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.43800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14M REMARK 465 ARG A 15 REMARK 465 TRP B 148 REMARK 465 THR B 149 REMARK 465 ALA B 149A REMARK 465 ASN B 149B REMARK 465 VAL B 149C REMARK 465 GLY B 149D REMARK 465 GLY B 246 REMARK 465 GLU B 247 REMARK 465 GLY C 14M REMARK 465 ARG C 15 REMARK 465 GLY D 246 REMARK 465 GLU D 247 REMARK 465 THR F 39 REMARK 465 PRO F 40 REMARK 465 SER F 41 REMARK 465 ILE F 42 REMARK 465 LEU F 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 77A CG CD NE CZ NH1 NH2 REMARK 470 ARG D 77A CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 111 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 1B -107.08 56.25 REMARK 500 CYS A 1 179.45 -50.67 REMARK 500 LEU A 6 30.65 -79.72 REMARK 500 PHE A 7 -87.87 -155.17 REMARK 500 LYS A 14A 8.43 -69.96 REMARK 500 SER B 20 -176.68 -49.05 REMARK 500 PRO B 28 0.57 -61.79 REMARK 500 LYS B 36 -80.68 -54.10 REMARK 500 SER B 48 -177.52 175.36 REMARK 500 THR B 54 175.38 167.19 REMARK 500 ASP B 60E 84.75 30.31 REMARK 500 ASN B 60G 66.97 -153.04 REMARK 500 GLU B 61 -59.15 -17.03 REMARK 500 ARG B 75 -170.87 170.99 REMARK 500 TYR B 76 90.41 -163.75 REMARK 500 GLU B 77 92.09 -69.96 REMARK 500 ASN B 78 -3.21 70.53 REMARK 500 ILE B 79 -69.42 -106.40 REMARK 500 ILE B 82 85.51 -154.80 REMARK 500 LYS B 87 128.43 157.74 REMARK 500 ASN B 98 22.84 -144.26 REMARK 500 ASN B 102 83.13 -42.33 REMARK 500 PRO B 111 107.25 -54.34 REMARK 500 SER B 115 -147.98 -105.45 REMARK 500 THR B 128 -73.47 -71.91 REMARK 500 ALA B 129 -36.10 -34.18 REMARK 500 LEU B 130 57.37 -52.74 REMARK 500 VAL B 158 149.61 165.11 REMARK 500 LYS B 169 -24.72 -38.84 REMARK 500 SER B 171 -5.57 -51.05 REMARK 500 ASP B 186A 69.08 75.10 REMARK 500 ASP B 189 159.69 178.54 REMARK 500 GLU B 192 132.30 -39.82 REMARK 500 SER B 195 151.94 -33.72 REMARK 500 PHE B 199 85.07 -152.65 REMARK 500 TRP B 215 -179.41 -172.42 REMARK 500 ASP B 221 -7.33 55.52 REMARK 500 ARG B 233 -71.19 -41.44 REMARK 500 LEU B 234 18.58 -69.69 REMARK 500 LYS B 236 -71.93 -42.06 REMARK 500 LYS B 240 -28.76 -39.54 REMARK 500 ALA C 1B -96.27 30.43 REMARK 500 ASP C 1A 30.30 -167.47 REMARK 500 PRO C 5 -8.78 -50.53 REMARK 500 PHE C 7 -68.65 -137.18 REMARK 500 LYS C 10 11.16 -147.37 REMARK 500 LYS C 14A -34.08 -24.94 REMARK 500 GLU C 14H -11.06 -48.14 REMARK 500 ILE D 24 107.78 -30.02 REMARK 500 SER D 27 76.59 -152.00 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SHH RELATED DB: PDB REMARK 900 SLOW FORM OF THROMBIN BOUND WITH PPACK DBREF 3QDZ A 1C 15 UNP P00734 THRB_HUMAN 333 363 DBREF 3QDZ B 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 3QDZ C 1C 15 UNP P00734 THRB_HUMAN 333 363 DBREF 3QDZ D 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 3QDZ E 39 47 UNP Q96RI0 PAR4_HUMAN 39 47 DBREF 3QDZ F 39 47 UNP Q96RI0 PAR4_HUMAN 39 47 SEQADV 3QDZ ASN B 102 UNP P00734 ASP 462 ENGINEERED MUTATION SEQADV 3QDZ ASN D 102 UNP P00734 ASP 462 ENGINEERED MUTATION SEQRES 1 A 31 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 A 31 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 A 31 TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASN ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 C 31 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 C 31 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 C 31 TYR ILE ASP GLY ARG SEQRES 1 D 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 D 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 D 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 D 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 D 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 D 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 D 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 D 259 TRP ARG GLU ASN LEU ASP ARG ASN ILE ALA LEU MET LYS SEQRES 9 D 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 D 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 D 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 D 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 D 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 D 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 D 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 D 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 D 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 D 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 D 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 D 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 E 9 THR PRO SER ILE LEU PRO ALA PRO ARG SEQRES 1 F 9 THR PRO SER ILE LEU PRO ALA PRO ARG HELIX 1 1 GLU A 14C SER A 14I 1 7 HELIX 2 2 ALA B 55 LEU B 60 1 6 HELIX 3 3 TYR B 60A ASP B 60E 5 5 HELIX 4 4 THR B 60I ASN B 62 5 3 HELIX 5 5 ASP B 125 LEU B 129C 1 8 HELIX 6 6 GLU B 164 THR B 172 1 9 HELIX 7 7 LEU B 234 PHE B 245 1 12 HELIX 8 8 PHE C 7 SER C 11 5 5 HELIX 9 9 THR C 14B GLU C 14H 1 7 HELIX 10 10 SER C 14I ILE C 14K 5 3 HELIX 11 11 PRO D 60B ASP D 60E 5 4 HELIX 12 12 THR D 60I ASN D 62 5 3 HELIX 13 13 ASP D 125 LEU D 130 1 9 HELIX 14 14 GLU D 164 THR D 172 1 9 HELIX 15 15 LEU D 234 GLN D 244 1 11 SHEET 1 A 7 GLN B 30 ARG B 35 0 SHEET 2 A 7 GLU B 39 LEU B 46 -1 O LEU B 41 N LEU B 33 SHEET 3 A 7 TRP B 51 LEU B 53 -1 O LEU B 53 N SER B 45 SHEET 4 A 7 ALA B 104 LEU B 108 -1 O MET B 106 N VAL B 52 SHEET 5 A 7 LYS B 81 ILE B 90 -1 N GLU B 86 O LYS B 107 SHEET 6 A 7 LEU B 64 ILE B 68 -1 N ILE B 68 O LYS B 81 SHEET 7 A 7 GLN B 30 ARG B 35 -1 N PHE B 34 O LEU B 65 SHEET 1 B 6 ASN B 159 PRO B 161 0 SHEET 2 B 6 LYS B 135 VAL B 138 -1 N GLY B 136 O LEU B 160 SHEET 3 B 6 PRO B 198 VAL B 200 -1 O VAL B 200 N ARG B 137 SHEET 4 B 6 GLY B 211 GLU B 217 -1 N GLY B 211 O PHE B 199 SHEET 5 B 6 GLY B 226 HIS B 230 -1 O PHE B 227 N TRP B 215 SHEET 6 B 6 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 C 5 ASN B 159 PRO B 161 0 SHEET 2 C 5 LYS B 135 VAL B 138 -1 N GLY B 136 O LEU B 160 SHEET 3 C 5 PRO B 198 VAL B 200 -1 O VAL B 200 N ARG B 137 SHEET 4 C 5 GLY B 211 GLU B 217 -1 N GLY B 211 O PHE B 199 SHEET 5 C 5 PRO E 44 PRO E 46 -1 O ALA E 45 N GLY B 216 SHEET 1 D 7 SER D 20 ASP D 21 0 SHEET 2 D 7 GLN D 156 PRO D 161 -1 O VAL D 157 N SER D 20 SHEET 3 D 7 LYS D 135 GLY D 140 -1 N GLY D 136 O LEU D 160 SHEET 4 D 7 PRO D 198 SER D 203 -1 O VAL D 200 N ARG D 137 SHEET 5 D 7 ARG D 206 ILE D 212 -1 O MET D 210 N PHE D 199 SHEET 6 D 7 GLY D 226 HIS D 230 -1 O THR D 229 N ILE D 212 SHEET 7 D 7 MET D 180 ALA D 183 -1 N PHE D 181 O TYR D 228 SHEET 1 E 6 LEU D 64 LEU D 65 0 SHEET 2 E 6 GLN D 30 ARG D 35 -1 N PHE D 34 O LEU D 65 SHEET 3 E 6 GLU D 39 LEU D 46 -1 O ALA D 44 N VAL D 31 SHEET 4 E 6 VAL D 52 THR D 54 -1 O LEU D 53 N SER D 45 SHEET 5 E 6 ALA D 104 LYS D 107 -1 O ALA D 104 N THR D 54 SHEET 6 E 6 LYS D 87 ILE D 90 -1 N TYR D 89 O LEU D 105 SHEET 1 F 2 LEU D 60 TYR D 60A 0 SHEET 2 F 2 LYS D 60F ASN D 60G-1 O LYS D 60F N TYR D 60A SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.04 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.03 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.03 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.04 SSBOND 5 CYS C 1 CYS D 122 1555 1555 2.03 SSBOND 6 CYS D 42 CYS D 58 1555 1555 2.02 SSBOND 7 CYS D 168 CYS D 182 1555 1555 2.03 SSBOND 8 CYS D 191 CYS D 220 1555 1555 2.04 CISPEP 1 SER B 36A PRO B 37 0 0.01 CISPEP 2 SER D 36A PRO D 37 0 -0.75 CRYST1 91.414 102.876 146.390 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010939 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006831 0.00000