PDB Short entry for 3QEP HEADER TRANSFERASE/DNA 20-JAN-11 3QEP TITLE RB69 DNA POLYMERASE (L561A/S565G/Y567A) TERNARY COMPLEX WITH DTTP TITLE 2 OPPOSITE DIFLUOROTOLUENE NUCLEOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GP43; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*TP*CP*GP*(DFT) COMPND 10 P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: DNA TEMPLATE; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'); COMPND 16 CHAIN: P; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: DNA PRIMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE RB69; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE RB69; SOURCE 4 ORGANISM_TAXID: 12353; SOURCE 5 GENE: 43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSP72; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS DIFLUOROTOLUENE NUCLEOSIDE, DTTP, TRIPLE MUTANT, TRANSFERASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.XIA,W.H.KONIGSBERG,J.WANG REVDAT 1 31-AUG-11 3QEP 0 JRNL AUTH S.XIA,W.H.KONIGSBERG,J.WANG JRNL TITL HYDROGEN-BONDING CAPABILITY OF A TEMPLATING DIFLUOROTOLUENE JRNL TITL 2 NUCLEOTIDE RESIDUE IN AN RB69 DNA POLYMERASE TERNARY JRNL TITL 3 COMPLEX. JRNL REF J.AM.CHEM.SOC. V. 133 10003 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21667997 JRNL DOI 10.1021/JA2021735 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.600 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 101984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5363 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6586 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 337 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7343 REMARK 3 NUCLEIC ACID ATOMS : 629 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 1234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8357 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11445 ; 1.163 ; 2.061 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 932 ; 5.214 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 381 ;34.940 ;24.199 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1370 ;13.368 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;14.805 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1216 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6193 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4543 ; 1.284 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7384 ; 2.158 ; 6.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3814 ; 2.664 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4045 ; 4.017 ; 9.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 1 T 18 REMARK 3 RESIDUE RANGE : P 103 P 115 REMARK 3 RESIDUE RANGE : X 1 X 1 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1350 -2.4990 -34.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.2555 REMARK 3 T33: 0.1934 T12: 0.0168 REMARK 3 T13: -0.0141 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.2339 L22: -0.0343 REMARK 3 L33: 0.0223 L12: 0.0523 REMARK 3 L13: 0.1166 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: -0.0355 S13: 0.1610 REMARK 3 S21: -0.0105 S22: 0.0364 S23: 0.0602 REMARK 3 S31: -0.0245 S32: -0.0333 S33: 0.0416 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 105 REMARK 3 RESIDUE RANGE : A 340 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9690 2.2510 -33.5340 REMARK 3 T TENSOR REMARK 3 T11: 0.0355 T22: 0.1609 REMARK 3 T33: 0.0960 T12: -0.0179 REMARK 3 T13: -0.0113 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.1628 L22: 1.3235 REMARK 3 L33: 0.4276 L12: 0.1308 REMARK 3 L13: -0.1310 L23: -0.4058 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0060 S13: 0.0489 REMARK 3 S21: 0.0627 S22: -0.0257 S23: -0.1004 REMARK 3 S31: -0.0410 S32: 0.0739 S33: 0.0256 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3370 -21.9190 -15.1580 REMARK 3 T TENSOR REMARK 3 T11: 0.0449 T22: 0.1529 REMARK 3 T33: 0.0469 T12: -0.0058 REMARK 3 T13: 0.0025 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.4271 L22: 0.7172 REMARK 3 L33: 1.0994 L12: 0.1757 REMARK 3 L13: 0.0859 L23: 0.0392 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.0512 S13: 0.0283 REMARK 3 S21: 0.1143 S22: -0.0441 S23: 0.0106 REMARK 3 S31: 0.0755 S32: -0.0738 S33: 0.0303 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 468 REMARK 3 RESIDUE RANGE : A 576 A 706 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5810 -6.3430 -60.0960 REMARK 3 T TENSOR REMARK 3 T11: 0.0633 T22: 0.2019 REMARK 3 T33: 0.0286 T12: -0.0219 REMARK 3 T13: -0.0168 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.6920 L22: 0.9509 REMARK 3 L33: 0.4395 L12: 0.4262 REMARK 3 L13: -0.1541 L23: -0.0867 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: 0.2061 S13: 0.0075 REMARK 3 S21: -0.1748 S22: 0.0996 S23: 0.0316 REMARK 3 S31: 0.0118 S32: -0.0946 S33: -0.0375 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 469 A 575 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4240 -26.6640 -47.4170 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.1641 REMARK 3 T33: 0.0594 T12: -0.0036 REMARK 3 T13: 0.0129 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.5462 L22: 2.9018 REMARK 3 L33: 0.4797 L12: 0.1620 REMARK 3 L13: 0.0129 L23: 0.3937 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.0780 S13: -0.1413 REMARK 3 S21: 0.0558 S22: 0.0121 S23: -0.0417 REMARK 3 S31: 0.1172 S32: 0.0160 S33: 0.0310 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 707 A 737 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5040 -22.5130 -47.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.0633 T22: 0.1699 REMARK 3 T33: 0.0798 T12: -0.0226 REMARK 3 T13: -0.0105 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.0984 L22: 0.4353 REMARK 3 L33: 0.6569 L12: 0.2013 REMARK 3 L13: -0.4019 L23: -0.2436 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.0265 S13: -0.1227 REMARK 3 S21: 0.0002 S22: 0.0696 S23: -0.0020 REMARK 3 S31: 0.0710 S32: 0.0281 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 738 A 901 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2130 -20.6810 -27.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.0206 T22: 0.1883 REMARK 3 T33: 0.0748 T12: 0.0281 REMARK 3 T13: 0.0215 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 1.5014 L22: 0.7395 REMARK 3 L33: 1.3966 L12: -0.0152 REMARK 3 L13: 0.2185 L23: 0.3705 REMARK 3 S TENSOR REMARK 3 S11: -0.1014 S12: -0.2752 S13: -0.0885 REMARK 3 S21: 0.0796 S22: 0.1118 S23: 0.0897 REMARK 3 S31: 0.0085 S32: -0.1071 S33: -0.0104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3QEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB063550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM CACL2, 15% (W/V) PEG 350 REMARK 280 MONOMETHYL ETHER (MME), AND 100 MM SODIUM CACODYLATE (PH 6.5), REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.56650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.24050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.88700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.24050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.56650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.88700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 902 REMARK 465 PHE A 903 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 197 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 DG T 5 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT T 6 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA T 8 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA T 11 O4' - C1' - N9 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC T 15 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG P 103 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC P 104 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC P 108 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC P 111 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT P 112 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 221 -68.31 -120.39 REMARK 500 ASN A 316 69.41 -151.29 REMARK 500 SER A 414 66.54 34.56 REMARK 500 ASN A 424 51.83 71.47 REMARK 500 PRO A 458 2.86 -64.11 REMARK 500 ASP A 579 107.34 -163.69 REMARK 500 THR A 622 -60.90 72.94 REMARK 500 ASP A 623 17.38 -153.26 REMARK 500 GLU A 686 -76.43 -104.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1009 DISTANCE = 5.70 ANGSTROMS REMARK 525 HOH A1093 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1111 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH A1112 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH A1124 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH A1126 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A1135 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A1136 DISTANCE = 8.77 ANGSTROMS REMARK 525 HOH A1924 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A1965 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A1966 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH T 981 DISTANCE = 6.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 905 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 623 OD1 REMARK 620 2 ASP A 411 OD2 84.1 REMARK 620 3 TTP A 904 O2B 88.8 167.6 REMARK 620 4 TTP A 904 O1G 169.9 104.5 81.7 REMARK 620 5 LEU A 412 O 86.4 98.8 91.0 97.3 REMARK 620 6 TTP A 904 O2A 87.1 87.6 81.8 87.9 170.4 REMARK 620 7 ASP A 411 OD1 122.5 48.8 142.7 67.7 73.1 116.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 908 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1234 O REMARK 620 2 HOH A1697 O 76.2 REMARK 620 3 HOH A1256 O 69.8 93.7 REMARK 620 4 HOH A1221 O 146.4 73.0 99.1 REMARK 620 5 HOH A1174 O 95.2 97.1 158.9 101.4 REMARK 620 6 GLU A 116 OE2 75.1 150.7 71.3 133.0 90.8 REMARK 620 7 GLU A 116 OE1 123.7 155.8 82.4 84.0 94.7 49.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 906 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1232 O REMARK 620 2 HOH A 968 O 104.5 REMARK 620 3 ASP A 623 OD2 85.9 160.6 REMARK 620 4 TTP A 904 O2A 137.1 80.8 80.6 REMARK 620 5 ASP A 411 OD2 141.6 100.3 79.8 75.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 907 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 531 O REMARK 620 2 ASN A 505 O 165.9 REMARK 620 3 ASN A 507 OD1 83.5 103.2 REMARK 620 4 HOH A1708 O 76.9 105.0 136.7 REMARK 620 5 HOH A1347 O 81.4 87.7 78.7 134.2 REMARK 620 6 HOH A1213 O 120.5 73.0 82.9 74.8 149.5 REMARK 620 7 HOH A1585 O 92.5 74.8 143.5 76.2 64.9 128.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 910 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 684 OD1 REMARK 620 2 HOH A1194 O 163.9 REMARK 620 3 HOH A1784 O 85.3 79.7 REMARK 620 4 HOH A1090 O 96.7 82.0 63.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 909 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1878 O REMARK 620 2 ASP A 792 O 75.2 REMARK 620 3 HOH A1879 O 67.5 62.2 REMARK 620 4 HOH A1703 O 82.7 87.5 141.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 5 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH T 588 O REMARK 620 2 HOH T 773 O 97.9 REMARK 620 3 HOH P 771 O 85.9 79.8 REMARK 620 4 HOH T 772 O 72.7 92.9 156.3 REMARK 620 5 HOH T 608 O 79.2 154.6 124.8 62.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QEI RELATED DB: PDB REMARK 900 RELATED ID: 3QEX RELATED DB: PDB REMARK 900 RELATED ID: 3QER RELATED DB: PDB REMARK 900 RELATED ID: 3QES RELATED DB: PDB REMARK 900 RELATED ID: 3QET RELATED DB: PDB REMARK 900 RELATED ID: 3QEV RELATED DB: PDB REMARK 900 RELATED ID: 3QEW RELATED DB: PDB DBREF 3QEP A 1 903 UNP Q38087 DPOL_BPR69 1 903 DBREF 3QEP T 1 18 PDB 3QEP 3QEP 1 18 DBREF 3QEP P 103 115 PDB 3QEP 3QEP 103 115 SEQADV 3QEP ALA A 222 UNP Q38087 ASP 222 CONFLICT SEQADV 3QEP ALA A 327 UNP Q38087 ASP 327 CONFLICT SEQADV 3QEP ALA A 561 UNP Q38087 LEU 561 ENGINEERED MUTATION SEQADV 3QEP GLY A 565 UNP Q38087 SER 565 ENGINEERED MUTATION SEQADV 3QEP ALA A 567 UNP Q38087 TYR 567 ENGINEERED MUTATION SEQRES 1 A 903 MET LYS GLU PHE TYR LEU THR VAL GLU GLN ILE GLY ASP SEQRES 2 A 903 SER ILE PHE GLU ARG TYR ILE ASP SER ASN GLY ARG GLU SEQRES 3 A 903 ARG THR ARG GLU VAL GLU TYR LYS PRO SER LEU PHE ALA SEQRES 4 A 903 HIS CYS PRO GLU SER GLN ALA THR LYS TYR PHE ASP ILE SEQRES 5 A 903 TYR GLY LYS PRO CYS THR ARG LYS LEU PHE ALA ASN MET SEQRES 6 A 903 ARG ASP ALA SER GLN TRP ILE LYS ARG MET GLU ASP ILE SEQRES 7 A 903 GLY LEU GLU ALA LEU GLY MET ASP ASP PHE LYS LEU ALA SEQRES 8 A 903 TYR LEU SER ASP THR TYR ASN TYR GLU ILE LYS TYR ASP SEQRES 9 A 903 HIS THR LYS ILE ARG VAL ALA ASN PHE ASP ILE GLU VAL SEQRES 10 A 903 THR SER PRO ASP GLY PHE PRO GLU PRO SER GLN ALA LYS SEQRES 11 A 903 HIS PRO ILE ASP ALA ILE THR HIS TYR ASP SER ILE ASP SEQRES 12 A 903 ASP ARG PHE TYR VAL PHE ASP LEU LEU ASN SER PRO TYR SEQRES 13 A 903 GLY ASN VAL GLU GLU TRP SER ILE GLU ILE ALA ALA LYS SEQRES 14 A 903 LEU GLN GLU GLN GLY GLY ASP GLU VAL PRO SER GLU ILE SEQRES 15 A 903 ILE ASP LYS ILE ILE TYR MET PRO PHE ASP ASN GLU LYS SEQRES 16 A 903 GLU LEU LEU MET GLU TYR LEU ASN PHE TRP GLN GLN LYS SEQRES 17 A 903 THR PRO VAL ILE LEU THR GLY TRP ASN VAL GLU SER PHE SEQRES 18 A 903 ALA ILE PRO TYR VAL TYR ASN ARG ILE LYS ASN ILE PHE SEQRES 19 A 903 GLY GLU SER THR ALA LYS ARG LEU SER PRO HIS ARG LYS SEQRES 20 A 903 THR ARG VAL LYS VAL ILE GLU ASN MET TYR GLY SER ARG SEQRES 21 A 903 GLU ILE ILE THR LEU PHE GLY ILE SER VAL LEU ASP TYR SEQRES 22 A 903 ILE ASP LEU TYR LYS LYS PHE SER PHE THR ASN GLN PRO SEQRES 23 A 903 SER TYR SER LEU ASP TYR ILE SER GLU PHE GLU LEU ASN SEQRES 24 A 903 VAL GLY LYS LEU LYS TYR ASP GLY PRO ILE SER LYS LEU SEQRES 25 A 903 ARG GLU SER ASN HIS GLN ARG TYR ILE SER TYR ASN ILE SEQRES 26 A 903 ILE ALA VAL TYR ARG VAL LEU GLN ILE ASP ALA LYS ARG SEQRES 27 A 903 GLN PHE ILE ASN LEU SER LEU ASP MET GLY TYR TYR ALA SEQRES 28 A 903 LYS ILE GLN ILE GLN SER VAL PHE SER PRO ILE LYS THR SEQRES 29 A 903 TRP ASP ALA ILE ILE PHE ASN SER LEU LYS GLU GLN ASN SEQRES 30 A 903 LYS VAL ILE PRO GLN GLY ARG SER HIS PRO VAL GLN PRO SEQRES 31 A 903 TYR PRO GLY ALA PHE VAL LYS GLU PRO ILE PRO ASN ARG SEQRES 32 A 903 TYR LYS TYR VAL MET SER PHE ASP LEU THR SER LEU TYR SEQRES 33 A 903 PRO SER ILE ILE ARG GLN VAL ASN ILE SER PRO GLU THR SEQRES 34 A 903 ILE ALA GLY THR PHE LYS VAL ALA PRO LEU HIS ASP TYR SEQRES 35 A 903 ILE ASN ALA VAL ALA GLU ARG PRO SER ASP VAL TYR SER SEQRES 36 A 903 CYS SER PRO ASN GLY MET MET TYR TYR LYS ASP ARG ASP SEQRES 37 A 903 GLY VAL VAL PRO THR GLU ILE THR LYS VAL PHE ASN GLN SEQRES 38 A 903 ARG LYS GLU HIS LYS GLY TYR MET LEU ALA ALA GLN ARG SEQRES 39 A 903 ASN GLY GLU ILE ILE LYS GLU ALA LEU HIS ASN PRO ASN SEQRES 40 A 903 LEU SER VAL ASP GLU PRO LEU ASP VAL ASP TYR ARG PHE SEQRES 41 A 903 ASP PHE SER ASP GLU ILE LYS GLU LYS ILE LYS LYS LEU SEQRES 42 A 903 SER ALA LYS SER LEU ASN GLU MET LEU PHE ARG ALA GLN SEQRES 43 A 903 ARG THR GLU VAL ALA GLY MET THR ALA GLN ILE ASN ARG SEQRES 44 A 903 LYS ALA LEU ILE ASN GLY LEU ALA GLY ALA LEU GLY ASN SEQRES 45 A 903 VAL TRP PHE ARG TYR TYR ASP LEU ARG ASN ALA THR ALA SEQRES 46 A 903 ILE THR THR PHE GLY GLN MET ALA LEU GLN TRP ILE GLU SEQRES 47 A 903 ARG LYS VAL ASN GLU TYR LEU ASN GLU VAL CYS GLY THR SEQRES 48 A 903 GLU GLY GLU ALA PHE VAL LEU TYR GLY ASP THR ASP SER SEQRES 49 A 903 ILE TYR VAL SER ALA ASP LYS ILE ILE ASP LYS VAL GLY SEQRES 50 A 903 GLU SER LYS PHE ARG ASP THR ASN HIS TRP VAL ASP PHE SEQRES 51 A 903 LEU ASP LYS PHE ALA ARG GLU ARG MET GLU PRO ALA ILE SEQRES 52 A 903 ASP ARG GLY PHE ARG GLU MET CYS GLU TYR MET ASN ASN SEQRES 53 A 903 LYS GLN HIS LEU MET PHE MET ASP ARG GLU ALA ILE ALA SEQRES 54 A 903 GLY PRO PRO LEU GLY SER LYS GLY ILE GLY GLY PHE TRP SEQRES 55 A 903 THR GLY LYS LYS ARG TYR ALA LEU ASN VAL TRP ASP MET SEQRES 56 A 903 GLU GLY THR ARG TYR ALA GLU PRO LYS LEU LYS ILE MET SEQRES 57 A 903 GLY LEU GLU THR GLN LYS SER SER THR PRO LYS ALA VAL SEQRES 58 A 903 GLN LYS ALA LEU LYS GLU CYS ILE ARG ARG MET LEU GLN SEQRES 59 A 903 GLU GLY GLU GLU SER LEU GLN GLU TYR PHE LYS GLU PHE SEQRES 60 A 903 GLU LYS GLU PHE ARG GLN LEU ASN TYR ILE SER ILE ALA SEQRES 61 A 903 SER VAL SER SER ALA ASN ASN ILE ALA LYS TYR ASP VAL SEQRES 62 A 903 GLY GLY PHE PRO GLY PRO LYS CYS PRO PHE HIS ILE ARG SEQRES 63 A 903 GLY ILE LEU THR TYR ASN ARG ALA ILE LYS GLY ASN ILE SEQRES 64 A 903 ASP ALA PRO GLN VAL VAL GLU GLY GLU LYS VAL TYR VAL SEQRES 65 A 903 LEU PRO LEU ARG GLU GLY ASN PRO PHE GLY ASP LYS CYS SEQRES 66 A 903 ILE ALA TRP PRO SER GLY THR GLU ILE THR ASP LEU ILE SEQRES 67 A 903 LYS ASP ASP VAL LEU HIS TRP MET ASP TYR THR VAL LEU SEQRES 68 A 903 LEU GLU LYS THR PHE ILE LYS PRO LEU GLU GLY PHE THR SEQRES 69 A 903 SER ALA ALA LYS LEU ASP TYR GLU LYS LYS ALA SER LEU SEQRES 70 A 903 PHE ASP MET PHE ASP PHE SEQRES 1 T 18 DT DC DG DFT DG DT DA DA DG DC DA DG DT SEQRES 2 T 18 DC DC DG DC DG SEQRES 1 P 13 DG DC DG DG DA DC DT DG DC DT DT DA DOC MODRES 3QEP DOC P 115 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DFT T 4 20 HET DOC P 115 18 HET TTP A 904 29 HET CA A 905 1 HET CA A 906 1 HET CA A 907 1 HET CA A 908 1 HET CA A 909 1 HET CA A 910 1 HET CA P 5 1 HETNAM DFT 1-[2-DEOXYRIBOFURANOSYL]-2,4-DIFLUORO-5-METHYL-BENZENE- HETNAM 2 DFT 5'MONOPHOSPHATE HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 2 DFT C12 H15 F2 O6 P FORMUL 3 DOC C9 H14 N3 O6 P FORMUL 4 TTP C10 H17 N2 O14 P3 FORMUL 5 CA 7(CA 2+) FORMUL 12 HOH *1234(H2 O) HELIX 1 1 ASN A 64 GLY A 79 1 16 HELIX 2 2 ASP A 87 TYR A 97 1 11 HELIX 3 3 ASP A 104 ILE A 108 5 5 HELIX 4 4 SER A 163 LYS A 169 1 7 HELIX 5 5 LEU A 170 GLY A 174 5 5 HELIX 6 6 PRO A 179 ASP A 184 1 6 HELIX 7 7 ASN A 193 LYS A 208 1 16 HELIX 8 8 PHE A 221 GLY A 235 1 15 HELIX 9 9 GLY A 235 LYS A 240 1 6 HELIX 10 10 ARG A 241 SER A 243 5 3 HELIX 11 11 ASP A 272 SER A 281 1 10 HELIX 12 12 SER A 289 ASN A 299 1 11 HELIX 13 13 PRO A 308 GLN A 339 1 32 HELIX 14 14 GLN A 339 LYS A 352 1 14 HELIX 15 15 GLN A 354 PHE A 359 5 6 HELIX 16 16 SER A 360 GLU A 375 1 16 HELIX 17 17 SER A 414 ASN A 424 1 11 HELIX 18 18 SER A 426 GLU A 428 5 3 HELIX 19 19 PRO A 438 ASN A 444 1 7 HELIX 20 20 GLY A 469 LEU A 503 1 35 HELIX 21 21 SER A 523 LYS A 531 1 9 HELIX 22 22 SER A 534 LEU A 570 1 37 HELIX 23 23 ASP A 579 GLY A 610 1 32 HELIX 24 24 ALA A 629 GLY A 637 1 9 HELIX 25 25 GLU A 638 PHE A 641 5 4 HELIX 26 26 ASP A 643 ARG A 658 1 16 HELIX 27 27 ARG A 658 MET A 674 1 17 HELIX 28 28 LEU A 730 LYS A 734 5 5 HELIX 29 29 PRO A 738 GLU A 755 1 18 HELIX 30 30 GLY A 756 PHE A 771 1 16 HELIX 31 31 ARG A 772 LEU A 774 5 3 HELIX 32 32 TYR A 776 ALA A 780 5 5 HELIX 33 33 ILE A 788 LYS A 790 5 3 HELIX 34 34 PRO A 802 ILE A 815 1 14 HELIX 35 35 ILE A 858 MET A 866 1 9 HELIX 36 36 ASP A 867 PHE A 876 1 10 HELIX 37 37 PHE A 876 LYS A 888 1 13 HELIX 38 38 SER A 896 PHE A 901 5 6 SHEET 1 A 3 PHE A 4 ILE A 11 0 SHEET 2 A 3 SER A 14 ILE A 20 -1 O ARG A 18 N LEU A 6 SHEET 3 A 3 GLU A 26 VAL A 31 -1 O ARG A 27 N TYR A 19 SHEET 1 B 4 SER A 36 HIS A 40 0 SHEET 2 B 4 PRO A 56 LEU A 61 -1 O LYS A 60 N LEU A 37 SHEET 3 B 4 TYR A 49 ASP A 51 -1 N TYR A 49 O CYS A 57 SHEET 4 B 4 LYS A 378 VAL A 379 1 O VAL A 379 N PHE A 50 SHEET 1 C 6 ILE A 186 PHE A 191 0 SHEET 2 C 6 ARG A 145 LEU A 151 1 N PHE A 146 O ILE A 187 SHEET 3 C 6 ALA A 135 ASP A 140 -1 N ILE A 136 O PHE A 149 SHEET 4 C 6 VAL A 110 GLU A 116 -1 N ASN A 112 O TYR A 139 SHEET 5 C 6 ILE A 212 THR A 214 1 O ILE A 212 N ALA A 111 SHEET 6 C 6 SER A 269 VAL A 270 1 O SER A 269 N LEU A 213 SHEET 1 D 2 ASN A 153 SER A 154 0 SHEET 2 D 2 GLY A 157 ASN A 158 -1 O GLY A 157 N SER A 154 SHEET 1 E 2 THR A 248 GLU A 254 0 SHEET 2 E 2 SER A 259 LEU A 265 -1 O ARG A 260 N ILE A 253 SHEET 1 F 7 ASN A 402 ARG A 403 0 SHEET 2 F 7 GLY A 700 GLY A 704 -1 O TRP A 702 N ASN A 402 SHEET 3 F 7 ARG A 707 MET A 715 -1 O ALA A 709 N PHE A 701 SHEET 4 F 7 MET A 683 ALA A 689 -1 N ILE A 688 O TRP A 713 SHEET 5 F 7 VAL A 407 LEU A 412 -1 N SER A 409 O GLU A 686 SHEET 6 F 7 SER A 624 SER A 628 -1 O VAL A 627 N MET A 408 SHEET 7 F 7 VAL A 617 GLY A 620 -1 N LEU A 618 O TYR A 626 SHEET 1 G 4 ASN A 402 ARG A 403 0 SHEET 2 G 4 GLY A 700 GLY A 704 -1 O TRP A 702 N ASN A 402 SHEET 3 G 4 ARG A 707 MET A 715 -1 O ALA A 709 N PHE A 701 SHEET 4 G 4 THR A 718 MET A 728 -1 O LYS A 726 N LEU A 710 SHEET 1 H 3 ILE A 430 THR A 433 0 SHEET 2 H 3 MET A 461 TYR A 463 -1 O MET A 462 N ALA A 431 SHEET 3 H 3 SER A 455 CYS A 456 -1 N SER A 455 O TYR A 463 SHEET 1 I 3 SER A 781 SER A 784 0 SHEET 2 I 3 LYS A 829 PRO A 834 -1 O VAL A 830 N SER A 783 SHEET 3 I 3 CYS A 845 PRO A 849 -1 O TRP A 848 N TYR A 831 SHEET 1 J 2 ASP A 792 VAL A 793 0 SHEET 2 J 2 PHE A 796 PRO A 797 -1 O PHE A 796 N VAL A 793 LINK O3' DG T 3 P DFT T 4 1555 1555 1.49 LINK O3' DFT T 4 P DG T 5 1555 1555 1.50 LINK O3' DA P 114 P DOC P 115 1555 1555 1.49 LINK OD1 ASP A 623 CA CA A 905 1555 1555 2.24 LINK CA CA A 908 O HOH A1234 1555 1555 2.25 LINK OD2 ASP A 411 CA CA A 905 1555 1555 2.26 LINK CA CA A 906 O HOH A1232 1555 1555 2.27 LINK O2B TTP A 904 CA CA A 905 1555 1555 2.27 LINK O LYS A 531 CA CA A 907 1555 1555 2.28 LINK O ASN A 505 CA CA A 907 1555 1555 2.28 LINK OD1 ASN A 507 CA CA A 907 1555 1555 2.28 LINK OD1 ASP A 684 CA CA A 910 1555 1555 2.30 LINK O1G TTP A 904 CA CA A 905 1555 1555 2.33 LINK O LEU A 412 CA CA A 905 1555 1555 2.34 LINK CA CA A 908 O HOH A1697 1555 1555 2.36 LINK CA CA A 907 O HOH A1708 1555 1555 2.37 LINK CA CA A 906 O HOH A 968 1555 1555 2.37 LINK O2A TTP A 904 CA CA A 905 1555 1555 2.38 LINK CA CA A 909 O HOH A1878 1555 1555 2.39 LINK CA CA A 910 O HOH A1194 1555 1555 2.43 LINK CA CA A 908 O HOH A1256 1555 1555 2.43 LINK CA CA A 907 O HOH A1347 1555 1555 2.46 LINK CA CA A 910 O HOH A1784 1555 1555 2.50 LINK CA CA P 5 O HOH T 588 1555 1555 2.50 LINK CA CA P 5 O HOH T 773 1555 1555 2.50 LINK O ASP A 792 CA CA A 909 1555 1555 2.51 LINK CA CA A 908 O HOH A1221 1555 1555 2.51 LINK CA CA A 909 O HOH A1879 1555 1555 2.52 LINK CA CA P 5 O HOH P 771 1555 1555 2.53 LINK CA CA A 908 O HOH A1174 1555 1555 2.54 LINK OD2 ASP A 623 CA CA A 906 1555 1555 2.55 LINK CA CA A 907 O HOH A1213 1555 1555 2.57 LINK CA CA A 907 O HOH A1585 1555 1555 2.57 LINK CA CA P 5 O HOH T 772 1555 1555 2.57 LINK OE2 GLU A 116 CA CA A 908 1555 1555 2.59 LINK O2A TTP A 904 CA CA A 906 1555 1555 2.60 LINK OE1 GLU A 116 CA CA A 908 1555 1555 2.63 LINK OD2 ASP A 411 CA CA A 906 1555 1555 2.65 LINK CA CA P 5 O HOH T 608 1555 1555 2.66 LINK CA CA A 909 O HOH A1703 1555 1555 2.69 LINK OD1 ASP A 411 CA CA A 905 1555 1555 2.84 LINK CA CA A 910 O HOH A1090 1555 1555 3.07 SITE 1 AC1 22 ASP A 411 LEU A 412 SER A 414 LEU A 415 SITE 2 AC1 22 TYR A 416 ARG A 482 LYS A 560 ASN A 564 SITE 3 AC1 22 ASP A 623 CA A 905 CA A 906 HOH A1246 SITE 4 AC1 22 HOH A1326 HOH A1496 HOH A1531 HOH A1710 SITE 5 AC1 22 HOH A1711 HOH A1746 HOH A1801 DOC P 115 SITE 6 AC1 22 DFT T 4 DG T 5 SITE 1 AC2 4 ASP A 411 LEU A 412 ASP A 623 TTP A 904 SITE 1 AC3 5 ASP A 411 ASP A 623 TTP A 904 HOH A 968 SITE 2 AC3 5 HOH A1232 SITE 1 AC4 7 ASN A 505 ASN A 507 LYS A 531 HOH A1213 SITE 2 AC4 7 HOH A1347 HOH A1585 HOH A1708 SITE 1 AC5 6 GLU A 116 HOH A1174 HOH A1221 HOH A1234 SITE 2 AC5 6 HOH A1256 HOH A1697 SITE 1 AC6 4 ASP A 792 HOH A1703 HOH A1878 HOH A1879 SITE 1 AC7 5 GLU A 660 ASP A 684 HOH A1090 HOH A1194 SITE 2 AC7 5 HOH A1784 SITE 1 AC8 5 HOH P 771 HOH T 588 HOH T 608 HOH T 772 SITE 2 AC8 5 HOH T 773 CRYST1 75.133 119.774 130.481 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007664 0.00000