PDB Short entry for 3QIJ HEADER STRUCTURAL PROTEIN 27-JAN-11 3QIJ TITLE PRIMITIVE-MONOCLINIC CRYSTAL STRUCTURE OF THE FERM DOMAIN OF PROTEIN TITLE 2 4.1R COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN 4.1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: P4.1, 4.1R, BAND 4.1, EPB4.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPB41, E41P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS CYTOSKELETON, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.NEDYALKOVA,N.ZHONG,Y.TONG,W.TEMPEL,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,H.PARK,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 3QIJ 1 SEQADV REVDAT 2 08-NOV-17 3QIJ 1 REMARK REVDAT 1 09-FEB-11 3QIJ 0 JRNL AUTH L.NEDYALKOVA,N.ZHONG,Y.TONG,W.TEMPEL,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,H.PARK JRNL TITL PRIMITIVE-MONOCLINIC CRYSTAL STRUCTURE OF THE FERM DOMAIN OF JRNL TITL 2 PROTEIN 4.1R JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.927 REMARK 3 FREE R VALUE TEST SET COUNT : 2029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08600 REMARK 3 B22 (A**2) : 1.28300 REMARK 3 B33 (A**2) : -1.16400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.195 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4400 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2938 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5976 ; 1.464 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7186 ; 0.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 543 ; 6.022 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;38.414 ;24.225 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 733 ;13.965 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 672 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4842 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 899 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2716 ; 0.855 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1089 ; 0.222 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4365 ; 1.533 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1684 ; 2.262 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 3.423 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7028 4.0261 79.0759 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.0896 REMARK 3 T33: 0.1037 T12: -0.0086 REMARK 3 T13: 0.0483 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.4976 L22: 1.5321 REMARK 3 L33: 3.1928 L12: 0.7997 REMARK 3 L13: 1.2145 L23: 1.4431 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: -0.0570 S13: 0.1497 REMARK 3 S21: 0.0273 S22: -0.1010 S23: 0.0955 REMARK 3 S31: -0.1087 S32: -0.1855 S33: 0.0481 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6911 -12.8480 50.7994 REMARK 3 T TENSOR REMARK 3 T11: 0.0357 T22: 0.0819 REMARK 3 T33: 0.0724 T12: -0.0122 REMARK 3 T13: 0.0281 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.9665 L22: 1.2372 REMARK 3 L33: 2.7027 L12: 0.0972 REMARK 3 L13: 0.4281 L23: 0.8645 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: 0.1956 S13: -0.0214 REMARK 3 S21: -0.0997 S22: 0.0783 S23: -0.0305 REMARK 3 S31: 0.0297 S32: 0.1755 S33: 0.0063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. THE PROGRAMS COOT, BUCCANEER, REMARK 3 ARP/WARP WERE USED DURING REFINEMENT AS WELL AS THE MOLPROBITY REMARK 3 SERVER. REMARK 4 REMARK 4 3QIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98322 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51901 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.98900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GG3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M MAGNESIUM CHLORIDE, REMARK 280 1% W/W DISPASE-I, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.73450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL MOLECULE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 SER A 200 REMARK 465 SER A 201 REMARK 465 GLY A 202 REMARK 465 ARG A 203 REMARK 465 GLU A 204 REMARK 465 ASN A 205 REMARK 465 LEU A 206 REMARK 465 TYR A 207 REMARK 465 PHE A 208 REMARK 465 ARG A 276 REMARK 465 GLY A 277 REMARK 465 VAL A 278 REMARK 465 PRO A 453 REMARK 465 GLY A 454 REMARK 465 GLU A 455 REMARK 465 GLN A 456 REMARK 465 GLU A 457 REMARK 465 GLN A 458 REMARK 465 TYR A 459 REMARK 465 MET B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 SER B 200 REMARK 465 SER B 201 REMARK 465 GLY B 202 REMARK 465 ARG B 203 REMARK 465 GLU B 204 REMARK 465 ASN B 205 REMARK 465 LEU B 206 REMARK 465 TYR B 207 REMARK 465 ASN B 258 REMARK 465 ALA B 259 REMARK 465 THR B 260 REMARK 465 SER B 261 REMARK 465 GLY B 454 REMARK 465 GLU B 455 REMARK 465 GLN B 456 REMARK 465 GLU B 457 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 209 CG CD OE1 NE2 REMARK 470 HIS A 211 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 213 CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 HIS A 229 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 231 CE NZ REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LEU A 246 CG CD1 CD2 REMARK 470 ASP A 257 CG OD1 OD2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 GLN A 295 CG CD OE1 NE2 REMARK 470 GLU A 343 CG CD OE1 OE2 REMARK 470 ASP A 352 CG OD1 OD2 REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 ARG A 375 CG CD NE CZ NH1 NH2 REMARK 470 SER A 376 OG REMARK 470 LYS A 402 CD CE NZ REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 LYS A 424 CE NZ REMARK 470 LEU A 427 CG CD1 CD2 REMARK 470 LYS A 439 CD CE NZ REMARK 470 LYS A 450 CE NZ REMARK 470 ARG A 471 NE CZ NH1 NH2 REMARK 470 LYS B 213 CE NZ REMARK 470 VAL B 226 CG1 CG2 REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 ASP B 257 CG OD1 OD2 REMARK 470 LYS B 262 NZ REMARK 470 LYS B 273 NZ REMARK 470 ARG B 276 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 317 NE CZ NH1 NH2 REMARK 470 LYS B 361 CG CD CE NZ REMARK 470 GLU B 362 CG CD OE1 OE2 REMARK 470 LYS B 402 CG CD CE NZ REMARK 470 LYS B 404 CE NZ REMARK 470 GLU B 407 CD OE1 OE2 REMARK 470 LYS B 424 CE NZ REMARK 470 LYS B 426 CG CD CE NZ REMARK 470 ARG B 431 CZ NH1 NH2 REMARK 470 LYS B 436 CD CE NZ REMARK 470 ARG B 452 CZ NH1 NH2 REMARK 470 LYS B 466 CD CE NZ REMARK 470 ARG B 471 CD NE CZ NH1 NH2 REMARK 470 LYS B 474 CE NZ REMARK 470 ARG B 488 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 395 CG - SD - CE ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP B 249 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 219 -5.47 72.57 REMARK 500 GLU A 247 61.87 -118.39 REMARK 500 ASP A 348 54.51 -150.73 REMARK 500 SER A 376 58.94 34.93 REMARK 500 ASP A 425 -128.92 72.43 REMARK 500 ARG A 444 -129.41 50.21 REMARK 500 ARG B 444 -119.65 58.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 3QIJ A 211 488 UNP P11171 41_HUMAN 211 488 DBREF 3QIJ B 211 488 UNP P11171 41_HUMAN 211 488 SEQADV 3QIJ MET A 193 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 194 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 195 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 196 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 197 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 198 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS A 199 UNP P11171 EXPRESSION TAG SEQADV 3QIJ SER A 200 UNP P11171 EXPRESSION TAG SEQADV 3QIJ SER A 201 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLY A 202 UNP P11171 EXPRESSION TAG SEQADV 3QIJ ARG A 203 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLU A 204 UNP P11171 EXPRESSION TAG SEQADV 3QIJ ASN A 205 UNP P11171 EXPRESSION TAG SEQADV 3QIJ LEU A 206 UNP P11171 EXPRESSION TAG SEQADV 3QIJ TYR A 207 UNP P11171 EXPRESSION TAG SEQADV 3QIJ PHE A 208 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLN A 209 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLY A 210 UNP P11171 EXPRESSION TAG SEQADV 3QIJ MET B 193 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 194 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 195 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 196 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 197 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 198 UNP P11171 EXPRESSION TAG SEQADV 3QIJ HIS B 199 UNP P11171 EXPRESSION TAG SEQADV 3QIJ SER B 200 UNP P11171 EXPRESSION TAG SEQADV 3QIJ SER B 201 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLY B 202 UNP P11171 EXPRESSION TAG SEQADV 3QIJ ARG B 203 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLU B 204 UNP P11171 EXPRESSION TAG SEQADV 3QIJ ASN B 205 UNP P11171 EXPRESSION TAG SEQADV 3QIJ LEU B 206 UNP P11171 EXPRESSION TAG SEQADV 3QIJ TYR B 207 UNP P11171 EXPRESSION TAG SEQADV 3QIJ PHE B 208 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLN B 209 UNP P11171 EXPRESSION TAG SEQADV 3QIJ GLY B 210 UNP P11171 EXPRESSION TAG SEQRES 1 A 296 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 296 LEU TYR PHE GLN GLY HIS CYS LYS VAL SER LEU LEU ASP SEQRES 3 A 296 ASP THR VAL TYR GLU CYS VAL VAL GLU LYS HIS ALA LYS SEQRES 4 A 296 GLY GLN ASP LEU LEU LYS ARG VAL CYS GLU HIS LEU ASN SEQRES 5 A 296 LEU LEU GLU GLU ASP TYR PHE GLY LEU ALA ILE TRP ASP SEQRES 6 A 296 ASN ALA THR SER LYS THR TRP LEU ASP SER ALA LYS GLU SEQRES 7 A 296 ILE LYS LYS GLN VAL ARG GLY VAL PRO TRP ASN PHE THR SEQRES 8 A 296 PHE ASN VAL LYS PHE TYR PRO PRO ASP PRO ALA GLN LEU SEQRES 9 A 296 THR GLU ASP ILE THR ARG TYR TYR LEU CYS LEU GLN LEU SEQRES 10 A 296 ARG GLN ASP ILE VAL ALA GLY ARG LEU PRO CYS SER PHE SEQRES 11 A 296 ALA THR LEU ALA LEU LEU GLY SER TYR THR ILE GLN SER SEQRES 12 A 296 GLU LEU GLY ASP TYR ASP PRO GLU LEU HIS GLY VAL ASP SEQRES 13 A 296 TYR VAL SER ASP PHE LYS LEU ALA PRO ASN GLN THR LYS SEQRES 14 A 296 GLU LEU GLU GLU LYS VAL MET GLU LEU HIS LYS SER TYR SEQRES 15 A 296 ARG SER MET THR PRO ALA GLN ALA ASP LEU GLU PHE LEU SEQRES 16 A 296 GLU ASN ALA LYS LYS LEU SER MET TYR GLY VAL ASP LEU SEQRES 17 A 296 HIS LYS ALA LYS ASP LEU GLU GLY VAL ASP ILE ILE LEU SEQRES 18 A 296 GLY VAL CYS SER SER GLY LEU LEU VAL TYR LYS ASP LYS SEQRES 19 A 296 LEU ARG ILE ASN ARG PHE PRO TRP PRO LYS VAL LEU LYS SEQRES 20 A 296 ILE SER TYR LYS ARG SER SER PHE PHE ILE LYS ILE ARG SEQRES 21 A 296 PRO GLY GLU GLN GLU GLN TYR GLU SER THR ILE GLY PHE SEQRES 22 A 296 LYS LEU PRO SER TYR ARG ALA ALA LYS LYS LEU TRP LYS SEQRES 23 A 296 VAL CYS VAL GLU HIS HIS THR PHE PHE ARG SEQRES 1 B 296 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 296 LEU TYR PHE GLN GLY HIS CYS LYS VAL SER LEU LEU ASP SEQRES 3 B 296 ASP THR VAL TYR GLU CYS VAL VAL GLU LYS HIS ALA LYS SEQRES 4 B 296 GLY GLN ASP LEU LEU LYS ARG VAL CYS GLU HIS LEU ASN SEQRES 5 B 296 LEU LEU GLU GLU ASP TYR PHE GLY LEU ALA ILE TRP ASP SEQRES 6 B 296 ASN ALA THR SER LYS THR TRP LEU ASP SER ALA LYS GLU SEQRES 7 B 296 ILE LYS LYS GLN VAL ARG GLY VAL PRO TRP ASN PHE THR SEQRES 8 B 296 PHE ASN VAL LYS PHE TYR PRO PRO ASP PRO ALA GLN LEU SEQRES 9 B 296 THR GLU ASP ILE THR ARG TYR TYR LEU CYS LEU GLN LEU SEQRES 10 B 296 ARG GLN ASP ILE VAL ALA GLY ARG LEU PRO CYS SER PHE SEQRES 11 B 296 ALA THR LEU ALA LEU LEU GLY SER TYR THR ILE GLN SER SEQRES 12 B 296 GLU LEU GLY ASP TYR ASP PRO GLU LEU HIS GLY VAL ASP SEQRES 13 B 296 TYR VAL SER ASP PHE LYS LEU ALA PRO ASN GLN THR LYS SEQRES 14 B 296 GLU LEU GLU GLU LYS VAL MET GLU LEU HIS LYS SER TYR SEQRES 15 B 296 ARG SER MET THR PRO ALA GLN ALA ASP LEU GLU PHE LEU SEQRES 16 B 296 GLU ASN ALA LYS LYS LEU SER MET TYR GLY VAL ASP LEU SEQRES 17 B 296 HIS LYS ALA LYS ASP LEU GLU GLY VAL ASP ILE ILE LEU SEQRES 18 B 296 GLY VAL CYS SER SER GLY LEU LEU VAL TYR LYS ASP LYS SEQRES 19 B 296 LEU ARG ILE ASN ARG PHE PRO TRP PRO LYS VAL LEU LYS SEQRES 20 B 296 ILE SER TYR LYS ARG SER SER PHE PHE ILE LYS ILE ARG SEQRES 21 B 296 PRO GLY GLU GLN GLU GLN TYR GLU SER THR ILE GLY PHE SEQRES 22 B 296 LYS LEU PRO SER TYR ARG ALA ALA LYS LYS LEU TRP LYS SEQRES 23 B 296 VAL CYS VAL GLU HIS HIS THR PHE PHE ARG HET UNX A 1 1 HET UNX A 2 1 HET UNX A 3 1 HET UNX A 4 1 HET UNX A 8 1 HET UNX A 12 1 HET UNX A 13 1 HET UNX A 14 1 HET UNX A 16 1 HET UNX A 18 1 HET UNX B 5 1 HET UNX B 6 1 HET UNX B 7 1 HET UNX B 9 1 HET UNX B 10 1 HET UNX B 11 1 HET UNX B 15 1 HET UNX B 17 1 HET UNX B 19 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 19(X) FORMUL 22 HOH *220(H2 O) HELIX 1 1 LYS A 231 ASN A 244 1 14 HELIX 2 2 GLU A 247 ASP A 249 5 3 HELIX 3 3 GLU A 270 VAL A 275 1 6 HELIX 4 4 ASP A 292 LEU A 296 5 5 HELIX 5 5 GLU A 298 ALA A 315 1 18 HELIX 6 6 SER A 321 GLY A 338 1 18 HELIX 7 7 ASP A 341 GLY A 346 1 6 HELIX 8 8 THR A 360 SER A 373 1 14 HELIX 9 9 THR A 378 LYS A 391 1 14 HELIX 10 10 SER A 469 PHE A 487 1 19 HELIX 11 11 LYS B 231 ASN B 244 1 14 HELIX 12 12 GLU B 247 ASP B 249 5 3 HELIX 13 13 ASP B 292 LEU B 296 5 5 HELIX 14 14 GLU B 298 ALA B 315 1 18 HELIX 15 15 SER B 321 GLY B 338 1 18 HELIX 16 16 ASP B 348 PHE B 353 5 6 HELIX 17 17 THR B 360 LYS B 372 1 13 HELIX 18 18 THR B 378 LYS B 391 1 14 HELIX 19 19 SER B 469 ARG B 488 1 20 SHEET 1 A 5 VAL A 221 VAL A 225 0 SHEET 2 A 5 HIS A 211 SER A 215 -1 N VAL A 214 O TYR A 222 SHEET 3 A 5 ASN A 281 VAL A 286 1 O PHE A 282 N SER A 215 SHEET 4 A 5 PHE A 251 ASN A 258 -1 N GLY A 252 O ASN A 285 SHEET 5 A 5 SER A 261 TRP A 264 -1 O THR A 263 N ILE A 255 SHEET 1 B 4 ASP A 399 LYS A 404 0 SHEET 2 B 4 ASP A 410 VAL A 415 -1 O LEU A 413 N HIS A 401 SHEET 3 B 4 GLY A 419 LYS A 424 -1 O LEU A 421 N GLY A 414 SHEET 4 B 4 LEU A 427 PRO A 433 -1 O ILE A 429 N VAL A 422 SHEET 1 C 3 VAL A 437 LYS A 443 0 SHEET 2 C 3 SER A 446 ILE A 451 -1 O LYS A 450 N LYS A 439 SHEET 3 C 3 SER A 461 LYS A 466 -1 O SER A 461 N ILE A 451 SHEET 1 D 5 VAL B 221 VAL B 225 0 SHEET 2 D 5 HIS B 211 SER B 215 -1 N VAL B 214 O TYR B 222 SHEET 3 D 5 TRP B 280 VAL B 286 1 O PHE B 284 N SER B 215 SHEET 4 D 5 PHE B 251 ILE B 255 -1 N ALA B 254 O THR B 283 SHEET 5 D 5 THR B 263 TRP B 264 -1 O THR B 263 N ILE B 255 SHEET 1 E 4 ASP B 399 LYS B 404 0 SHEET 2 E 4 ASP B 410 VAL B 415 -1 O LEU B 413 N HIS B 401 SHEET 3 E 4 GLY B 419 LYS B 424 -1 O LEU B 421 N GLY B 414 SHEET 4 E 4 LEU B 427 PRO B 433 -1 O ILE B 429 N VAL B 422 SHEET 1 F 3 VAL B 437 LYS B 443 0 SHEET 2 F 3 SER B 446 ILE B 451 -1 O PHE B 448 N SER B 441 SHEET 3 F 3 SER B 461 LYS B 466 -1 O SER B 461 N ILE B 451 CISPEP 1 VAL B 278 PRO B 279 0 5.14 CRYST1 62.001 53.469 88.766 90.00 106.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016129 0.000000 0.004918 0.00000 SCALE2 0.000000 0.018702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011778 0.00000