PDB Short entry for 3QLA HEADER TRANSCRIPTION/STRUCTURAL PROTEIN 02-FEB-11 3QLA TITLE HEXAGONAL COMPLEX STRUCTURE OF ATRX ADD BOUND TO H3K9ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR ATRX; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: N-TERMINAL ADD DOMAIN, UNP RESIDUES 167-289; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE ATRX, X-LINKED HELICASE II, X-LINKED COMPND 6 NUCLEAR PROTEIN, XNP, ZNF-HX; COMPND 7 EC: 3.6.4.12; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PEPTIDE OF HISTONE H3.3; COMPND 12 CHAIN: C, F; COMPND 13 FRAGMENT: N-TERMINAL TAIL, UNP RESIDUES 2-16; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATRX, RAD54L, XH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS ZINC FINGER, TRANSCRIPTION, HISTONE, LYSINE TRIMETHYLATION, NUCLEAR KEYWDS 2 PROTEIN, HISTONE-BINDING PROTEIN, TRANSCRIPTION-STRUCTURAL PROTEIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.XIANG,H.LI REVDAT 3 01-NOV-23 3QLA 1 REMARK SEQADV LINK REVDAT 2 05-MAR-14 3QLA 1 JRNL VERSN REVDAT 1 15-JUN-11 3QLA 0 JRNL AUTH S.IWASE,B.XIANG,S.GHOSH,T.REN,P.W.LEWIS,J.C.COCHRANE, JRNL AUTH 2 C.D.ALLIS,D.J.PICKETTS,D.J.PATEL,H.LI,Y.SHI JRNL TITL ATRX ADD DOMAIN LINKS AN ATYPICAL HISTONE METHYLATION JRNL TITL 2 RECOGNITION MECHANISM TO HUMAN MENTAL-RETARDATION SYNDROME JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 769 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21666679 JRNL DOI 10.1038/NSMB.2062 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 41649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6004 - 3.4450 1.00 4208 186 0.1520 0.1682 REMARK 3 2 3.4450 - 2.7351 0.99 4126 204 0.1467 0.1762 REMARK 3 3 2.7351 - 2.3895 0.99 4093 212 0.1509 0.1654 REMARK 3 4 2.3895 - 2.1711 0.97 4006 235 0.1585 0.1772 REMARK 3 5 2.1711 - 2.0156 0.97 3950 253 0.1564 0.1876 REMARK 3 6 2.0156 - 1.8968 0.95 3935 217 0.1599 0.1766 REMARK 3 7 1.8968 - 1.8018 0.94 3858 215 0.1641 0.1823 REMARK 3 8 1.8018 - 1.7234 0.93 3895 187 0.1627 0.1890 REMARK 3 9 1.7234 - 1.6570 0.91 3775 204 0.1754 0.2017 REMARK 3 10 1.6570 - 1.5998 0.89 3710 180 0.2128 0.2235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2220 REMARK 3 ANGLE : 1.365 3003 REMARK 3 CHIRALITY : 0.080 315 REMARK 3 PLANARITY : 0.007 386 REMARK 3 DIHEDRAL : 14.422 841 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43055 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3QLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 4000, 0.1M MES, 0.2M KCL, PH REMARK 280 6.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.76067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.88033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.82050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.94017 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.70083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 288 REMARK 465 GLN A 289 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 465 GLY D 161 REMARK 465 PRO D 162 REMARK 465 LEU D 163 REMARK 465 GLY D 164 REMARK 465 SER D 165 REMARK 465 MET D 166 REMARK 465 GLY D 167 REMARK 465 ILE D 168 REMARK 465 GLU D 288 REMARK 465 GLN D 289 REMARK 465 THR F 11 REMARK 465 GLY F 12 REMARK 465 GLY F 13 REMARK 465 LYS F 14 REMARK 465 ALA F 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 448 O HOH D 456 1.87 REMARK 500 O HOH D 425 O HOH D 428 1.90 REMARK 500 OD2 ASP A 275 O HOH A 296 1.97 REMARK 500 O HOH D 413 O HOH D 426 2.01 REMARK 500 OE1 GLU A 271 O HOH A 416 2.03 REMARK 500 O HOH A 343 O HOH D 305 2.04 REMARK 500 O HOH D 292 O HOH D 357 2.08 REMARK 500 O HOH A 423 O HOH A 433 2.08 REMARK 500 O GLY A 215 O HOH A 424 2.10 REMARK 500 O HOH D 369 O HOH D 385 2.10 REMARK 500 O HOH A 141 O HOH A 294 2.15 REMARK 500 O HOH A 337 O HOH C 380 2.15 REMARK 500 O HOH D 413 O HOH D 453 2.16 REMARK 500 O HOH D 370 O HOH D 442 2.18 REMARK 500 O HOH A 378 O HOH D 365 2.18 REMARK 500 O HOH C 161 O HOH C 306 2.18 REMARK 500 O HOH D 327 O HOH D 442 2.18 REMARK 500 O HOH D 418 O HOH D 448 2.18 REMARK 500 OD1 ASN D 260 O HOH D 300 2.19 REMARK 500 O HOH D 410 O HOH D 415 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 294 O HOH A 377 5555 1.93 REMARK 500 O HOH A 454 O HOH A 455 6554 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 165 164.81 64.00 REMARK 500 ASN A 286 5.25 -65.83 REMARK 500 HIS D 180 30.10 39.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 171 SG REMARK 620 2 CYS A 174 SG 107.9 REMARK 620 3 CYS A 197 SG 112.0 114.8 REMARK 620 4 CYS A 200 SG 108.9 108.8 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 220 SG REMARK 620 2 CYS A 223 SG 104.7 REMARK 620 3 CYS A 240 SG 111.4 113.7 REMARK 620 4 CYS A 243 SG 115.8 107.1 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 232 SG REMARK 620 2 CYS A 235 SG 109.7 REMARK 620 3 CYS A 265 SG 105.6 102.6 REMARK 620 4 CYS A 268 SG 112.3 104.1 121.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 290 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 183 O REMARK 620 2 ILE A 186 O 65.3 REMARK 620 3 HOH D 109 O 124.2 82.8 REMARK 620 4 MET D 205 O 149.7 139.6 60.8 REMARK 620 5 SER D 206 O 88.3 148.1 128.5 71.7 REMARK 620 6 HOH D 453 O 95.5 117.5 59.4 59.7 81.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 171 SG REMARK 620 2 CYS D 174 SG 106.0 REMARK 620 3 CYS D 197 SG 111.4 112.5 REMARK 620 4 CYS D 200 SG 108.5 110.9 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 220 SG REMARK 620 2 CYS D 223 SG 105.6 REMARK 620 3 CYS D 240 SG 111.5 112.8 REMARK 620 4 CYS D 243 SG 115.9 105.7 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 232 SG REMARK 620 2 CYS D 235 SG 109.5 REMARK 620 3 CYS D 265 SG 106.2 103.1 REMARK 620 4 CYS D 268 SG 114.1 104.5 118.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QL9 RELATED DB: PDB REMARK 900 SAME COMPLEX, MONOCLINIC CRYSTAL FORM REMARK 900 RELATED ID: 3QLC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH UNMODIFIED H3(1-15) PEPTIDE REMARK 900 RELATED ID: 3QLN RELATED DB: PDB REMARK 900 ATRX ADD DOMAIN IN FREE STATE DBREF 3QLA A 167 289 UNP P46100 ATRX_HUMAN 167 289 DBREF 3QLA C 1 15 UNP P84243 H33_HUMAN 2 16 DBREF 3QLA D 167 289 UNP P46100 ATRX_HUMAN 167 289 DBREF 3QLA F 1 15 UNP P84243 H33_HUMAN 2 16 SEQADV 3QLA GLY A 161 UNP P46100 EXPRESSION TAG SEQADV 3QLA PRO A 162 UNP P46100 EXPRESSION TAG SEQADV 3QLA LEU A 163 UNP P46100 EXPRESSION TAG SEQADV 3QLA GLY A 164 UNP P46100 EXPRESSION TAG SEQADV 3QLA SER A 165 UNP P46100 EXPRESSION TAG SEQADV 3QLA MET A 166 UNP P46100 EXPRESSION TAG SEQADV 3QLA ARG A 251 UNP P46100 LYS 251 ENGINEERED MUTATION SEQADV 3QLA TYR A 284 UNP P46100 PHE 284 ENGINEERED MUTATION SEQADV 3QLA GLY D 161 UNP P46100 EXPRESSION TAG SEQADV 3QLA PRO D 162 UNP P46100 EXPRESSION TAG SEQADV 3QLA LEU D 163 UNP P46100 EXPRESSION TAG SEQADV 3QLA GLY D 164 UNP P46100 EXPRESSION TAG SEQADV 3QLA SER D 165 UNP P46100 EXPRESSION TAG SEQADV 3QLA MET D 166 UNP P46100 EXPRESSION TAG SEQADV 3QLA ARG D 251 UNP P46100 LYS 251 ENGINEERED MUTATION SEQADV 3QLA TYR D 284 UNP P46100 PHE 284 ENGINEERED MUTATION SEQRES 1 A 129 GLY PRO LEU GLY SER MET GLY ILE VAL SER CYS THR ALA SEQRES 2 A 129 CYS GLY GLN GLN VAL ASN HIS PHE GLN LYS ASP SER ILE SEQRES 3 A 129 TYR ARG HIS PRO SER LEU GLN VAL LEU ILE CYS LYS ASN SEQRES 4 A 129 CYS PHE LYS TYR TYR MET SER ASP ASP ILE SER ARG ASP SEQRES 5 A 129 SER ASP GLY MET ASP GLU GLN CYS ARG TRP CYS ALA GLU SEQRES 6 A 129 GLY GLY ASN LEU ILE CYS CYS ASP PHE CYS HIS ASN ALA SEQRES 7 A 129 PHE CYS LYS LYS CYS ILE LEU ARG ASN LEU GLY ARG ARG SEQRES 8 A 129 GLU LEU SER THR ILE MET ASP GLU ASN ASN GLN TRP TYR SEQRES 9 A 129 CYS TYR ILE CYS HIS PRO GLU PRO LEU LEU ASP LEU VAL SEQRES 10 A 129 THR ALA CYS ASN SER VAL TYR GLU ASN LEU GLU GLN SEQRES 1 C 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 C 15 LYS ALA SEQRES 1 D 129 GLY PRO LEU GLY SER MET GLY ILE VAL SER CYS THR ALA SEQRES 2 D 129 CYS GLY GLN GLN VAL ASN HIS PHE GLN LYS ASP SER ILE SEQRES 3 D 129 TYR ARG HIS PRO SER LEU GLN VAL LEU ILE CYS LYS ASN SEQRES 4 D 129 CYS PHE LYS TYR TYR MET SER ASP ASP ILE SER ARG ASP SEQRES 5 D 129 SER ASP GLY MET ASP GLU GLN CYS ARG TRP CYS ALA GLU SEQRES 6 D 129 GLY GLY ASN LEU ILE CYS CYS ASP PHE CYS HIS ASN ALA SEQRES 7 D 129 PHE CYS LYS LYS CYS ILE LEU ARG ASN LEU GLY ARG ARG SEQRES 8 D 129 GLU LEU SER THR ILE MET ASP GLU ASN ASN GLN TRP TYR SEQRES 9 D 129 CYS TYR ILE CYS HIS PRO GLU PRO LEU LEU ASP LEU VAL SEQRES 10 D 129 THR ALA CYS ASN SER VAL TYR GLU ASN LEU GLU GLN SEQRES 1 F 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 F 15 LYS ALA MODRES 3QLA M3L C 9 LYS N-TRIMETHYLLYSINE MODRES 3QLA M3L F 9 LYS N-TRIMETHYLLYSINE HET M3L C 9 31 HET M3L F 9 31 HET ZN A 1 1 HET ZN A 2 1 HET ZN A 3 1 HET K A 290 1 HET ZN D 1 1 HET ZN D 2 1 HET ZN D 3 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION HETNAM K POTASSIUM ION FORMUL 2 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 ZN 6(ZN 2+) FORMUL 8 K K 1+ FORMUL 12 HOH *471(H2 O) HELIX 1 1 GLN A 182 ASP A 184 5 3 HELIX 2 2 LYS A 198 ASP A 207 1 10 HELIX 3 3 LYS A 241 MET A 257 1 17 HELIX 4 4 PRO A 270 PRO A 272 5 3 HELIX 5 5 LEU A 273 ASN A 286 1 14 HELIX 6 6 GLN D 182 ILE D 186 5 5 HELIX 7 7 CYS D 197 ASP D 207 1 11 HELIX 8 8 LYS D 241 GLY D 249 1 9 HELIX 9 9 GLY D 249 MET D 257 1 9 HELIX 10 10 PRO D 270 PRO D 272 5 3 HELIX 11 11 LEU D 273 ASN D 286 1 14 SHEET 1 A 2 ILE A 186 ARG A 188 0 SHEET 2 A 2 LEU A 195 CYS A 197 -1 O ILE A 196 N TYR A 187 SHEET 1 B 3 ALA A 238 CYS A 240 0 SHEET 2 B 3 ASN A 228 CYS A 231 -1 N ILE A 230 O PHE A 239 SHEET 3 B 3 THR C 3 GLN C 5 -1 O LYS C 4 N LEU A 229 SHEET 1 C 2 TYR D 187 ARG D 188 0 SHEET 2 C 2 LEU D 195 ILE D 196 -1 O ILE D 196 N TYR D 187 SHEET 1 D 3 ALA D 238 CYS D 240 0 SHEET 2 D 3 ASN D 228 CYS D 231 -1 N ILE D 230 O PHE D 239 SHEET 3 D 3 ARG F 2 GLN F 5 -1 O ARG F 2 N CYS D 231 LINK C ARG C 8 N M3L C 9 1555 1555 1.32 LINK C M3L C 9 N SER C 10 1555 1555 1.33 LINK C ARG F 8 N M3L F 9 1555 1555 1.32 LINK C M3L F 9 N SER F 10 1555 1555 1.32 LINK ZN ZN A 1 SG CYS A 171 1555 1555 2.31 LINK ZN ZN A 1 SG CYS A 174 1555 1555 2.27 LINK ZN ZN A 1 SG CYS A 197 1555 1555 2.28 LINK ZN ZN A 1 SG CYS A 200 1555 1555 2.31 LINK ZN ZN A 2 SG CYS A 220 1555 1555 2.31 LINK ZN ZN A 2 SG CYS A 223 1555 1555 2.32 LINK ZN ZN A 2 SG CYS A 240 1555 1555 2.29 LINK ZN ZN A 2 SG CYS A 243 1555 1555 2.27 LINK ZN ZN A 3 SG CYS A 232 1555 1555 2.26 LINK ZN ZN A 3 SG CYS A 235 1555 1555 2.25 LINK ZN ZN A 3 SG CYS A 265 1555 1555 2.30 LINK ZN ZN A 3 SG CYS A 268 1555 1555 2.28 LINK O LYS A 183 K K A 290 1555 1555 2.83 LINK O ILE A 186 K K A 290 1555 1555 2.77 LINK K K A 290 O HOH D 109 1555 1555 2.81 LINK K K A 290 O MET D 205 1555 1555 2.82 LINK K K A 290 O SER D 206 1555 1555 3.05 LINK K K A 290 O HOH D 453 1555 1555 3.03 LINK ZN ZN D 1 SG CYS D 171 1555 1555 2.27 LINK ZN ZN D 1 SG CYS D 174 1555 1555 2.27 LINK ZN ZN D 1 SG CYS D 197 1555 1555 2.29 LINK ZN ZN D 1 SG CYS D 200 1555 1555 2.25 LINK ZN ZN D 2 SG CYS D 220 1555 1555 2.29 LINK ZN ZN D 2 SG CYS D 223 1555 1555 2.32 LINK ZN ZN D 2 SG CYS D 240 1555 1555 2.29 LINK ZN ZN D 2 SG CYS D 243 1555 1555 2.26 LINK ZN ZN D 3 SG CYS D 232 1555 1555 2.27 LINK ZN ZN D 3 SG CYS D 235 1555 1555 2.28 LINK ZN ZN D 3 SG CYS D 265 1555 1555 2.30 LINK ZN ZN D 3 SG CYS D 268 1555 1555 2.26 SITE 1 AC1 4 CYS A 171 CYS A 174 CYS A 197 CYS A 200 SITE 1 AC2 4 CYS A 220 CYS A 223 CYS A 240 CYS A 243 SITE 1 AC3 4 CYS A 232 CYS A 235 CYS A 265 CYS A 268 SITE 1 AC4 7 LYS A 183 ILE A 186 TYR A 187 HOH D 109 SITE 2 AC4 7 MET D 205 SER D 206 HOH D 453 SITE 1 AC5 4 CYS D 171 CYS D 174 CYS D 197 CYS D 200 SITE 1 AC6 4 CYS D 220 CYS D 223 CYS D 240 CYS D 243 SITE 1 AC7 4 CYS D 232 CYS D 235 CYS D 265 CYS D 268 CRYST1 66.709 66.709 131.641 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014990 0.008655 0.000000 0.00000 SCALE2 0.000000 0.017310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007596 0.00000