PDB Short entry for 3QTE HEADER ANTIMICROBIAL PROTEIN 22-FEB-11 3QTE TITLE CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN 6 (H27W MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN-6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PROCESSED PEPTIDE (UNP RESIDUES 69-100); COMPND 5 SYNONYM: DEFENSIN, ALPHA 6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS ANTIMICROBIAL PROTEIN, PANETH CELLS DEFENSIN, HD6, HUMAN ALPHA KEYWDS 2 DEFENSIN EXPDTA X-RAY DIFFRACTION AUTHOR M.PAZGIER,W.LU REVDAT 3 13-SEP-23 3QTE 1 REMARK SEQADV REVDAT 2 12-SEP-12 3QTE 1 JRNL REVDAT 1 11-JAN-12 3QTE 0 JRNL AUTH H.CHU,M.PAZGIER,G.JUNG,S.P.NUCCIO,P.A.CASTILLO,M.F.DE JONG, JRNL AUTH 2 M.G.WINTER,S.E.WINTER,J.WEHKAMP,B.SHEN,N.H.SALZMAN, JRNL AUTH 3 M.A.UNDERWOOD,R.M.TSOLIS,G.M.YOUNG,W.LU,R.I.LEHRER, JRNL AUTH 4 A.J.BAUMLER,C.L.BEVINS JRNL TITL HUMAN ALPHA-DEFENSIN 6 PROMOTES MUCOSAL INNATE IMMUNITY JRNL TITL 2 THROUGH SELF-ASSEMBLED PEPTIDE NANONETS. JRNL REF SCIENCE V. 337 477 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 22722251 JRNL DOI 10.1126/SCIENCE.1218831 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 7856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 384 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 494 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.85000 REMARK 3 B22 (A**2) : -14.83000 REMARK 3 B33 (A**2) : 8.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 33.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1081 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1465 ; 1.816 ; 1.902 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 7.923 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;25.097 ;19.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 160 ;18.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 148 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 820 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 632 ; 0.998 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1016 ; 1.839 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 449 ; 2.838 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 449 ; 4.352 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 32 REMARK 3 RESIDUE RANGE : A 34 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): -14.2025 -6.5237 -5.8372 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.0788 REMARK 3 T33: 0.1305 T12: 0.0088 REMARK 3 T13: -0.0488 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.6245 L22: 2.3162 REMARK 3 L33: 0.3755 L12: 0.6643 REMARK 3 L13: -0.3728 L23: -0.5476 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.0566 S13: -0.1277 REMARK 3 S21: 0.0594 S22: 0.0080 S23: 0.0391 REMARK 3 S31: -0.0313 S32: -0.0971 S33: 0.0264 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 32 REMARK 3 RESIDUE RANGE : B 34 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8555 9.6511 -16.2589 REMARK 3 T TENSOR REMARK 3 T11: 0.1427 T22: 0.0926 REMARK 3 T33: 0.0992 T12: 0.1075 REMARK 3 T13: 0.0458 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 1.0281 L22: 1.9313 REMARK 3 L33: 1.7353 L12: 1.3610 REMARK 3 L13: -0.2522 L23: -0.7708 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: 0.0984 S13: -0.1252 REMARK 3 S21: 0.0298 S22: 0.0962 S23: -0.1388 REMARK 3 S31: 0.1070 S32: -0.0340 S33: -0.1756 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 32 REMARK 3 RESIDUE RANGE : C 34 C 43 REMARK 3 ORIGIN FOR THE GROUP (A): -31.0067 11.4145 -5.9499 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.0815 REMARK 3 T33: 0.1157 T12: -0.0105 REMARK 3 T13: -0.0805 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.4538 L22: 2.4285 REMARK 3 L33: 1.4974 L12: 0.6111 REMARK 3 L13: -0.7211 L23: -0.2257 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.0350 S13: -0.0252 REMARK 3 S21: -0.0717 S22: -0.0403 S23: 0.0518 REMARK 3 S31: 0.0157 S32: -0.1086 S33: 0.0586 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 32 REMARK 3 RESIDUE RANGE : D 33 D 42 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6746 -6.2572 -16.9398 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.1245 REMARK 3 T33: 0.0996 T12: 0.0364 REMARK 3 T13: -0.0127 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 1.9801 L22: 1.1509 REMARK 3 L33: 2.2731 L12: -0.6285 REMARK 3 L13: 1.1790 L23: -1.5166 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: 0.1973 S13: -0.0566 REMARK 3 S21: -0.0518 S22: -0.0589 S23: -0.1373 REMARK 3 S31: -0.0007 S32: -0.0300 S33: 0.0700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3QTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.949 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.08800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57900 REMARK 200 R SYM FOR SHELL (I) : 0.50400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZMQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, PH 6.5, 1M NA ACETATE REMARK 280 TRIHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.33750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 32.67500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CL CL A 33 O HOH C 41 1645 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 23 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 33 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 33 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZMQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN 6 REMARK 900 RELATED ID: 1ZMP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN 5 DBREF 3QTE A 1 32 UNP Q01524 DEF6_HUMAN 69 100 DBREF 3QTE B 1 32 UNP Q01524 DEF6_HUMAN 69 100 DBREF 3QTE C 1 32 UNP Q01524 DEF6_HUMAN 69 100 DBREF 3QTE D 1 32 UNP Q01524 DEF6_HUMAN 69 100 SEQADV 3QTE TRP A 27 UNP Q01524 HIS 95 ENGINEERED MUTATION SEQADV 3QTE TRP B 27 UNP Q01524 HIS 95 ENGINEERED MUTATION SEQADV 3QTE TRP C 27 UNP Q01524 HIS 95 ENGINEERED MUTATION SEQADV 3QTE TRP D 27 UNP Q01524 HIS 95 ENGINEERED MUTATION SEQRES 1 A 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 A 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 A 32 TRP ARG PHE CYS CYS LEU SEQRES 1 B 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 B 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 B 32 TRP ARG PHE CYS CYS LEU SEQRES 1 C 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 C 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 C 32 TRP ARG PHE CYS CYS LEU SEQRES 1 D 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 D 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 D 32 TRP ARG PHE CYS CYS LEU HET CL A 33 1 HET CL B 33 1 HET GOL C 33 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CL 2(CL 1-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *39(H2 O) SHEET 1 A 6 THR A 3 ARG A 7 0 SHEET 2 A 6 ILE A 25 LEU A 32 -1 O ARG A 28 N ARG A 7 SHEET 3 A 6 TYR A 15 VAL A 22 -1 N TYR A 17 O PHE A 29 SHEET 4 A 6 TYR B 15 VAL B 22 -1 O THR B 21 N THR A 21 SHEET 5 A 6 ILE B 25 ARG B 7 -1 O TRP B 27 N CYS B 20 SHEET 6 A 6 PHE B 2 ARG B 7 -1 N ARG B 7 O ARG B 28 SHEET 1 B 7 THR A 3 ARG A 7 0 SHEET 2 B 7 ILE A 25 LEU A 32 -1 O ARG A 28 N ARG A 7 SHEET 3 B 7 TYR A 15 VAL A 22 -1 N TYR A 17 O PHE A 29 SHEET 4 B 7 TYR B 15 VAL B 22 -1 O THR B 21 N THR A 21 SHEET 5 B 7 ILE B 25 ARG B 7 -1 O TRP B 27 N CYS B 20 SHEET 6 B 7 ILE C 25 LEU C 32 -1 O CYS C 30 N HIS C 5 SHEET 7 B 7 TYR C 15 VAL C 22 -1 N GLY C 18 O PHE C 29 SHEET 1 C 3 THR D 3 ARG D 7 0 SHEET 2 C 3 ILE D 25 LEU D 32 -1 O ARG D 28 N ARG D 7 SHEET 3 C 3 TYR D 15 VAL D 22 -1 N TYR D 17 O PHE D 29 SSBOND 1 CYS A 4 CYS A 31 1555 1555 2.04 SSBOND 2 CYS A 6 CYS A 20 1555 1555 2.07 SSBOND 3 CYS A 10 CYS A 30 1555 1555 2.03 SSBOND 4 CYS B 4 CYS B 31 1555 1555 2.03 SSBOND 5 CYS B 6 CYS B 20 1555 1555 2.07 SSBOND 6 CYS B 10 CYS B 30 1555 1555 2.03 SSBOND 7 CYS C 4 CYS C 31 1555 1555 2.02 SSBOND 8 CYS C 6 CYS C 20 1555 1555 2.00 SSBOND 9 CYS C 10 CYS C 30 1555 1555 2.01 SSBOND 10 CYS D 4 CYS D 31 1555 1555 2.03 SSBOND 11 CYS D 6 CYS D 20 1555 1555 2.08 SSBOND 12 CYS D 10 CYS D 30 1555 1555 2.01 SITE 1 AC1 1 HOH C 41 SITE 1 AC2 4 SER A 12 TYR B 17 GLY C 18 THR C 19 CRYST1 33.774 32.675 54.005 90.00 108.35 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029609 0.000000 0.009821 0.00000 SCALE2 0.000000 0.030604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019509 0.00000