PDB Short entry for 3QXY HEADER TRANSFERASE 02-MAR-11 3QXY TITLE HUMAN SETD6 IN COMPLEX WITH RELA LYS310 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SETD6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SET DOMAIN-CONTAINING PROTEIN 6; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRANSCRIPTION FACTOR P65; COMPND 9 CHAIN: P, Q; COMPND 10 FRAGMENT: UNP Q04206 RESIDUES 302-316; COMPND 11 SYNONYM: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT, NUCLEAR FACTOR OF COMPND 12 KAPPA LIGHT POLYPEPTIDE GENE ENHANCER IN B-CELLS 3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PXC862; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 15 OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN). KEYWDS EPIGENETICS, PROTEIN LYSINE METHYLTRANSFERASE, TRANSFERASE, NF-KB KEYWDS 2 NETWORK VIA METHYLLYSINE SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHANG,D.LEVY,J.R.HORTON,J.PENG,X.ZHANG,O.GOZANI,X.CHENG REVDAT 4 21-FEB-24 3QXY 1 REMARK REVDAT 3 07-SEP-11 3QXY 1 JRNL REVDAT 2 10-AUG-11 3QXY 1 JRNL VERSN REVDAT 1 25-MAY-11 3QXY 0 JRNL AUTH Y.CHANG,D.LEVY,J.R.HORTON,J.PENG,X.ZHANG,O.GOZANI,X.CHENG JRNL TITL STRUCTURAL BASIS OF SETD6-MEDIATED REGULATION OF THE NF-KB JRNL TITL 2 NETWORK VIA METHYL-LYSINE SIGNALING. JRNL REF NUCLEIC ACIDS RES. V. 39 6380 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21515635 JRNL DOI 10.1093/NAR/GKR256 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 107141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.620 REMARK 3 FREE R VALUE TEST SET COUNT : 3881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6679 - 4.5086 0.99 10853 420 0.1719 0.2178 REMARK 3 2 4.5086 - 3.5798 0.99 10759 421 0.1480 0.2199 REMARK 3 3 3.5798 - 3.1276 0.98 10745 418 0.1689 0.2093 REMARK 3 4 3.1276 - 2.8418 0.97 10597 407 0.1909 0.2552 REMARK 3 5 2.8418 - 2.6382 0.96 10518 388 0.1862 0.2542 REMARK 3 6 2.6382 - 2.4827 0.95 10373 350 0.1779 0.2566 REMARK 3 7 2.4827 - 2.3584 0.93 10244 353 0.1719 0.2225 REMARK 3 8 2.3584 - 2.2557 0.92 10011 400 0.1525 0.2110 REMARK 3 9 2.2557 - 2.1689 0.90 9798 364 0.1592 0.2116 REMARK 3 10 2.1689 - 2.0941 0.86 9362 360 0.1672 0.2221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 34.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.80130 REMARK 3 B22 (A**2) : 1.05960 REMARK 3 B33 (A**2) : 5.74170 REMARK 3 B12 (A**2) : 1.69780 REMARK 3 B13 (A**2) : -2.57150 REMARK 3 B23 (A**2) : -2.75500 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6843 REMARK 3 ANGLE : 1.053 9284 REMARK 3 CHIRALITY : 0.069 1062 REMARK 3 PLANARITY : 0.005 1175 REMARK 3 DIHEDRAL : 14.072 2507 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110964 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SGXPRO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) POLYETHYLENE GLYCOL (PEG) REMARK 280 3350, 0.1 M DI-AMMONIUM HYDROGEN CITRATE, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 PRO A 8 REMARK 465 ARG A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 VAL A 14 REMARK 465 ASP A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 ASP A 18 REMARK 465 GLU A 231 REMARK 465 GLU A 232 REMARK 465 GLU A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 ASP A 388 REMARK 465 GLY A 389 REMARK 465 GLY A 390 REMARK 465 GLY A 391 REMARK 465 ASP A 392 REMARK 465 ASP A 393 REMARK 465 ARG P 302 REMARK 465 LYS P 303 REMARK 465 ARG P 304 REMARK 465 THR P 305 REMARK 465 TYR P 306 REMARK 465 GLU P 307 REMARK 465 THR P 308 REMARK 465 PHE P 309 REMARK 465 SER P 311 REMARK 465 ILE P 312 REMARK 465 MET P 313 REMARK 465 LYS P 314 REMARK 465 LYS P 315 REMARK 465 SER P 316 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 ALA B 5 REMARK 465 LYS B 6 REMARK 465 ARG B 7 REMARK 465 PRO B 8 REMARK 465 ARG B 9 REMARK 465 VAL B 10 REMARK 465 ALA B 11 REMARK 465 GLY B 12 REMARK 465 PRO B 13 REMARK 465 VAL B 14 REMARK 465 ASP B 15 REMARK 465 GLY B 16 REMARK 465 GLY B 17 REMARK 465 ASP B 18 REMARK 465 GLU B 232 REMARK 465 GLU B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 LYS B 236 REMARK 465 GLU B 237 REMARK 465 ASP B 388 REMARK 465 GLY B 389 REMARK 465 GLY B 390 REMARK 465 GLY B 391 REMARK 465 ASP B 392 REMARK 465 ASP B 393 REMARK 465 LYS B 394 REMARK 465 ARG B 395 REMARK 465 GLU B 396 REMARK 465 GLU B 397 REMARK 465 GLY B 398 REMARK 465 ARG Q 302 REMARK 465 LYS Q 303 REMARK 465 ARG Q 304 REMARK 465 THR Q 305 REMARK 465 TYR Q 306 REMARK 465 GLU Q 307 REMARK 465 THR Q 308 REMARK 465 PHE Q 309 REMARK 465 SER Q 311 REMARK 465 ILE Q 312 REMARK 465 MET Q 313 REMARK 465 LYS Q 314 REMARK 465 LYS Q 315 REMARK 465 SER Q 316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 19 CG CD1 CD2 REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 GLN A 69 CG CD OE1 NE2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 GLU A 379 CG CD OE1 OE2 REMARK 470 GLU A 380 CG CD OE1 OE2 REMARK 470 ARG A 382 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 LEU A 384 CG CD1 CD2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 ASP A 386 CG OD1 OD2 REMARK 470 GLN A 387 CG CD OE1 NE2 REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 ARG A 395 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 19 CG CD1 CD2 REMARK 470 ASP B 20 CG OD1 OD2 REMARK 470 GLN B 69 CG CD OE1 NE2 REMARK 470 ARG B 185 NE CZ NH1 NH2 REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 GLU B 231 CG CD OE1 OE2 REMARK 470 LYS B 327 CG CD CE NZ REMARK 470 GLU B 329 CG CD OE1 OE2 REMARK 470 LYS B 344 CG CD CE NZ REMARK 470 GLU B 346 CG CD OE1 OE2 REMARK 470 GLU B 360 CG CD OE1 OE2 REMARK 470 GLU B 379 CG CD OE1 OE2 REMARK 470 ARG B 382 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 383 CG CD OE1 OE2 REMARK 470 LYS B 385 CG CD CE NZ REMARK 470 ASP B 386 CG OD1 OD2 REMARK 470 GLN B 387 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 73 131.11 -170.11 REMARK 500 ILE A 191 -58.99 -127.12 REMARK 500 ALA A 246 -54.96 77.50 REMARK 500 ASP A 386 -72.44 -106.60 REMARK 500 ALA B 73 130.15 -170.58 REMARK 500 ILE B 191 -57.85 -130.93 REMARK 500 GLU B 230 -71.55 -104.58 REMARK 500 ALA B 246 -53.90 77.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 6734 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 483 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 6735 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 477 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 479 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE CORRESPONDS TO ISOFORM 2 OF HUMAN SETD6 (NP_079136) DBREF 3QXY A 1 473 UNP Q8TBK2 SETD6_HUMAN 1 449 DBREF 3QXY P 302 316 UNP Q04206 TF65_HUMAN 302 316 DBREF 3QXY B 1 473 UNP Q8TBK2 SETD6_HUMAN 1 449 DBREF 3QXY Q 302 316 UNP Q04206 TF65_HUMAN 302 316 SEQRES 1 A 449 MET ALA THR GLN ALA LYS ARG PRO ARG VAL ALA GLY PRO SEQRES 2 A 449 VAL ASP GLY GLY ASP LEU ASP PRO VAL ALA CYS PHE LEU SEQRES 3 A 449 SER TRP CYS ARG ARG VAL GLY LEU GLU LEU SER PRO LYS SEQRES 4 A 449 VAL ALA VAL SER ARG GLN GLY THR VAL ALA GLY TYR GLY SEQRES 5 A 449 MET VAL ALA ARG GLU SER VAL GLN ALA GLY GLU LEU LEU SEQRES 6 A 449 PHE VAL VAL PRO ARG ALA ALA LEU LEU SER GLN HIS THR SEQRES 7 A 449 CYS SER ILE GLY GLY LEU LEU GLU ARG GLU ARG VAL ALA SEQRES 8 A 449 LEU GLN SER GLN SER GLY TRP VAL PRO LEU LEU LEU ALA SEQRES 9 A 449 LEU LEU HIS GLU LEU GLN ALA PRO ALA SER ARG TRP ARG SEQRES 10 A 449 PRO TYR PHE ALA LEU TRP PRO GLU LEU GLY ARG LEU GLU SEQRES 11 A 449 HIS PRO MET PHE TRP PRO GLU GLU GLU ARG ARG CYS LEU SEQRES 12 A 449 LEU GLN GLY THR GLY VAL PRO GLU ALA VAL GLU LYS ASP SEQRES 13 A 449 LEU ALA ASN ILE ARG SER GLU TYR GLN SER ILE VAL LEU SEQRES 14 A 449 PRO PHE MET GLU ALA HIS PRO ASP LEU PHE SER LEU ARG SEQRES 15 A 449 VAL ARG SER LEU GLU LEU TYR HIS GLN LEU VAL ALA LEU SEQRES 16 A 449 VAL MET ALA TYR SER PHE GLN GLU PRO LEU GLU GLU GLU SEQRES 17 A 449 GLU ASP GLU LYS GLU PRO ASN SER PRO VAL MET VAL PRO SEQRES 18 A 449 ALA ALA ASP ILE LEU ASN HIS LEU ALA ASN HIS ASN ALA SEQRES 19 A 449 ASN LEU GLU TYR SER ALA ASN CYS LEU ARG MET VAL ALA SEQRES 20 A 449 THR GLN PRO ILE PRO LYS GLY HIS GLU ILE PHE ASN THR SEQRES 21 A 449 TYR GLY GLN MET ALA ASN TRP GLN LEU ILE HIS MET TYR SEQRES 22 A 449 GLY PHE VAL GLU PRO TYR PRO ASP ASN THR ASP ASP THR SEQRES 23 A 449 ALA ASP ILE GLN MET VAL THR VAL ARG GLU ALA ALA LEU SEQRES 24 A 449 GLN GLY THR LYS THR GLU ALA GLU ARG HIS LEU VAL TYR SEQRES 25 A 449 GLU ARG TRP ASP PHE LEU CYS LYS LEU GLU MET VAL GLY SEQRES 26 A 449 GLU GLU GLY ALA PHE VAL ILE GLY ARG GLU GLU VAL LEU SEQRES 27 A 449 THR GLU GLU GLU LEU THR THR THR LEU LYS VAL LEU CYS SEQRES 28 A 449 MET PRO ALA GLU GLU PHE ARG GLU LEU LYS ASP GLN ASP SEQRES 29 A 449 GLY GLY GLY ASP ASP LYS ARG GLU GLU GLY SER LEU THR SEQRES 30 A 449 ILE THR ASN ILE PRO LYS LEU LYS ALA SER TRP ARG GLN SEQRES 31 A 449 LEU LEU GLN ASN SER VAL LEU LEU THR LEU GLN THR TYR SEQRES 32 A 449 ALA THR ASP LEU LYS THR ASP GLN GLY LEU LEU SER ASN SEQRES 33 A 449 LYS GLU VAL TYR ALA LYS LEU SER TRP ARG GLU GLN GLN SEQRES 34 A 449 ALA LEU GLN VAL ARG TYR GLY GLN LYS MET ILE LEU HIS SEQRES 35 A 449 GLN LEU LEU GLU LEU THR SER SEQRES 1 P 15 ARG LYS ARG THR TYR GLU THR PHE LYS SER ILE MET LYS SEQRES 2 P 15 LYS SER SEQRES 1 B 449 MET ALA THR GLN ALA LYS ARG PRO ARG VAL ALA GLY PRO SEQRES 2 B 449 VAL ASP GLY GLY ASP LEU ASP PRO VAL ALA CYS PHE LEU SEQRES 3 B 449 SER TRP CYS ARG ARG VAL GLY LEU GLU LEU SER PRO LYS SEQRES 4 B 449 VAL ALA VAL SER ARG GLN GLY THR VAL ALA GLY TYR GLY SEQRES 5 B 449 MET VAL ALA ARG GLU SER VAL GLN ALA GLY GLU LEU LEU SEQRES 6 B 449 PHE VAL VAL PRO ARG ALA ALA LEU LEU SER GLN HIS THR SEQRES 7 B 449 CYS SER ILE GLY GLY LEU LEU GLU ARG GLU ARG VAL ALA SEQRES 8 B 449 LEU GLN SER GLN SER GLY TRP VAL PRO LEU LEU LEU ALA SEQRES 9 B 449 LEU LEU HIS GLU LEU GLN ALA PRO ALA SER ARG TRP ARG SEQRES 10 B 449 PRO TYR PHE ALA LEU TRP PRO GLU LEU GLY ARG LEU GLU SEQRES 11 B 449 HIS PRO MET PHE TRP PRO GLU GLU GLU ARG ARG CYS LEU SEQRES 12 B 449 LEU GLN GLY THR GLY VAL PRO GLU ALA VAL GLU LYS ASP SEQRES 13 B 449 LEU ALA ASN ILE ARG SER GLU TYR GLN SER ILE VAL LEU SEQRES 14 B 449 PRO PHE MET GLU ALA HIS PRO ASP LEU PHE SER LEU ARG SEQRES 15 B 449 VAL ARG SER LEU GLU LEU TYR HIS GLN LEU VAL ALA LEU SEQRES 16 B 449 VAL MET ALA TYR SER PHE GLN GLU PRO LEU GLU GLU GLU SEQRES 17 B 449 GLU ASP GLU LYS GLU PRO ASN SER PRO VAL MET VAL PRO SEQRES 18 B 449 ALA ALA ASP ILE LEU ASN HIS LEU ALA ASN HIS ASN ALA SEQRES 19 B 449 ASN LEU GLU TYR SER ALA ASN CYS LEU ARG MET VAL ALA SEQRES 20 B 449 THR GLN PRO ILE PRO LYS GLY HIS GLU ILE PHE ASN THR SEQRES 21 B 449 TYR GLY GLN MET ALA ASN TRP GLN LEU ILE HIS MET TYR SEQRES 22 B 449 GLY PHE VAL GLU PRO TYR PRO ASP ASN THR ASP ASP THR SEQRES 23 B 449 ALA ASP ILE GLN MET VAL THR VAL ARG GLU ALA ALA LEU SEQRES 24 B 449 GLN GLY THR LYS THR GLU ALA GLU ARG HIS LEU VAL TYR SEQRES 25 B 449 GLU ARG TRP ASP PHE LEU CYS LYS LEU GLU MET VAL GLY SEQRES 26 B 449 GLU GLU GLY ALA PHE VAL ILE GLY ARG GLU GLU VAL LEU SEQRES 27 B 449 THR GLU GLU GLU LEU THR THR THR LEU LYS VAL LEU CYS SEQRES 28 B 449 MET PRO ALA GLU GLU PHE ARG GLU LEU LYS ASP GLN ASP SEQRES 29 B 449 GLY GLY GLY ASP ASP LYS ARG GLU GLU GLY SER LEU THR SEQRES 30 B 449 ILE THR ASN ILE PRO LYS LEU LYS ALA SER TRP ARG GLN SEQRES 31 B 449 LEU LEU GLN ASN SER VAL LEU LEU THR LEU GLN THR TYR SEQRES 32 B 449 ALA THR ASP LEU LYS THR ASP GLN GLY LEU LEU SER ASN SEQRES 33 B 449 LYS GLU VAL TYR ALA LYS LEU SER TRP ARG GLU GLN GLN SEQRES 34 B 449 ALA LEU GLN VAL ARG TYR GLY GLN LYS MET ILE LEU HIS SEQRES 35 B 449 GLN LEU LEU GLU LEU THR SER SEQRES 1 Q 15 ARG LYS ARG THR TYR GLU THR PHE LYS SER ILE MET LYS SEQRES 2 Q 15 LYS SER HET SAM A6734 27 HET EDO A 474 4 HET EDO A 475 4 HET EDO A 476 4 HET EDO A 477 4 HET EDO A 478 4 HET EDO A 479 4 HET EDO A 480 4 HET EDO A 481 4 HET EDO A 482 4 HET EDO A 483 4 HET EDO A 484 4 HET SAM B6735 27 HET EDO B 474 4 HET EDO B 475 4 HET EDO B 476 4 HET EDO B 477 4 HET EDO B 478 4 HET EDO B 479 4 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 SAM 2(C15 H22 N6 O5 S) FORMUL 6 EDO 17(C2 H6 O2) FORMUL 24 HOH *667(H2 O) HELIX 1 1 LEU A 19 GLY A 33 1 15 HELIX 2 2 ALA A 95 LEU A 97 5 3 HELIX 3 3 ILE A 105 GLU A 112 1 8 HELIX 4 4 ARG A 113 GLN A 117 5 5 HELIX 5 5 TRP A 122 ALA A 135 1 14 HELIX 6 6 TRP A 140 ALA A 145 1 6 HELIX 7 7 GLU A 149 LEU A 153 5 5 HELIX 8 8 HIS A 155 TRP A 159 5 5 HELIX 9 9 PRO A 160 GLN A 169 1 10 HELIX 10 10 GLY A 172 ILE A 191 1 20 HELIX 11 11 ILE A 191 HIS A 199 1 9 HELIX 12 12 SER A 204 ARG A 208 5 5 HELIX 13 13 SER A 209 SER A 224 1 16 HELIX 14 14 ALA A 246 LEU A 250 5 5 HELIX 15 15 ALA A 289 GLY A 298 1 10 HELIX 16 16 MET A 315 GLY A 325 1 11 HELIX 17 17 THR A 328 LEU A 345 1 18 HELIX 18 18 THR A 363 MET A 376 1 14 HELIX 19 19 PRO A 377 GLN A 387 1 11 HELIX 20 20 ASN A 404 LEU A 408 5 5 HELIX 21 21 LYS A 409 GLN A 425 1 17 HELIX 22 22 ASP A 430 ASN A 440 1 11 HELIX 23 23 ASN A 440 LEU A 447 1 8 HELIX 24 24 SER A 448 THR A 472 1 25 HELIX 25 25 LEU B 19 GLY B 33 1 15 HELIX 26 26 ALA B 95 LEU B 97 5 3 HELIX 27 27 ILE B 105 GLU B 112 1 8 HELIX 28 28 TRP B 122 GLN B 134 1 13 HELIX 29 29 TRP B 140 ALA B 145 1 6 HELIX 30 30 GLU B 149 LEU B 153 5 5 HELIX 31 31 HIS B 155 TRP B 159 5 5 HELIX 32 32 PRO B 160 GLN B 169 1 10 HELIX 33 33 GLY B 172 ILE B 191 1 20 HELIX 34 34 ILE B 191 HIS B 199 1 9 HELIX 35 35 SER B 204 ARG B 208 5 5 HELIX 36 36 SER B 209 SER B 224 1 16 HELIX 37 37 ALA B 246 LEU B 250 5 5 HELIX 38 38 ALA B 289 GLY B 298 1 10 HELIX 39 39 MET B 315 GLY B 325 1 11 HELIX 40 40 THR B 328 LEU B 345 1 18 HELIX 41 41 THR B 363 MET B 376 1 14 HELIX 42 42 PRO B 377 GLN B 387 1 11 HELIX 43 43 ASN B 404 LEU B 408 5 5 HELIX 44 44 LYS B 409 GLN B 425 1 17 HELIX 45 45 ASP B 430 ASN B 440 1 11 HELIX 46 46 ASN B 440 LEU B 447 1 8 HELIX 47 47 SER B 448 THR B 472 1 25 SHEET 1 A 4 GLU A 35 LEU A 36 0 SHEET 2 A 4 LEU A 88 PRO A 93 -1 O VAL A 91 N GLU A 35 SHEET 3 A 4 CYS A 266 ALA A 271 -1 O LEU A 267 N VAL A 92 SHEET 4 A 4 ALA A 258 TYR A 262 -1 N GLU A 261 O ARG A 268 SHEET 1 B 4 VAL A 64 SER A 67 0 SHEET 2 B 4 GLY A 76 ALA A 79 -1 O GLY A 76 N SER A 67 SHEET 3 B 4 GLU A 280 ASN A 283 -1 O ILE A 281 N MET A 77 SHEET 4 B 4 ASN A 251 HIS A 252 1 N ASN A 251 O ASN A 283 SHEET 1 C 2 THR A 310 GLN A 314 0 SHEET 2 C 2 ALA A 353 GLY A 357 -1 O ILE A 356 N ALA A 311 SHEET 1 D 4 GLU B 35 LEU B 36 0 SHEET 2 D 4 LEU B 88 PRO B 93 -1 O VAL B 91 N GLU B 35 SHEET 3 D 4 CYS B 266 ALA B 271 -1 O MET B 269 N LEU B 89 SHEET 4 D 4 ALA B 258 TYR B 262 -1 N GLU B 261 O ARG B 268 SHEET 1 E 3 VAL B 64 SER B 67 0 SHEET 2 E 3 GLY B 76 ALA B 79 -1 O GLY B 76 N SER B 67 SHEET 3 E 3 GLU B 280 ILE B 281 -1 O ILE B 281 N MET B 77 SHEET 1 F 2 THR B 310 GLN B 314 0 SHEET 2 F 2 ALA B 353 GLY B 357 -1 O ILE B 356 N ALA B 311 CISPEP 1 TYR A 303 PRO A 304 0 3.40 CISPEP 2 TYR B 303 PRO B 304 0 1.46 SITE 1 AC1 21 ALA A 73 GLY A 74 TYR A 75 ALA A 222 SITE 2 AC1 21 TYR A 223 ASP A 248 ILE A 249 LEU A 250 SITE 3 AC1 21 ASN A 251 HIS A 252 TYR A 285 TYR A 297 SITE 4 AC1 21 PHE A 299 EDO A 480 HOH A 533 HOH A 568 SITE 5 AC1 21 HOH A 580 HOH A 606 HOH A 652 HOH A 668 SITE 6 AC1 21 LYS P 310 SITE 1 AC2 6 LEU A 150 GLY A 151 ARG A 152 LEU A 153 SITE 2 AC2 6 PHE A 158 GLN A 215 SITE 1 AC3 3 SER A 120 ASN A 183 GLU A 187 SITE 1 AC4 6 LEU A 424 TYR A 427 ALA A 428 THR A 429 SITE 2 AC4 6 HOH A 532 HOH A 765 SITE 1 AC5 5 THR A 368 GLU A 396 GLU A 397 GLY A 398 SITE 2 AC5 5 SER A 399 SITE 1 AC6 6 VAL A 300 TYR A 444 TRP A 449 GLN A 452 SITE 2 AC6 6 HOH A 626 HOH A 722 SITE 1 AC7 4 ARG A 30 LEU A 34 LEU A 36 HOH A 573 SITE 1 AC8 7 HOH A 46 LEU A 253 VAL A 300 HOH A 626 SITE 2 AC8 7 HOH A 641 SAM A6734 LYS B 441 SITE 1 AC9 5 ASN A 440 GLU A 442 ARG B 68 GLY B 74 SITE 2 AC9 5 EDO B 477 SITE 1 BC1 6 LEU A 362 THR A 363 GLU A 364 GLU A 365 SITE 2 BC1 6 GLU A 366 HOH A 676 SITE 1 BC2 7 GLN A 324 ASN A 418 LEU A 421 LEU A 422 SITE 2 BC2 7 GLN A 425 HOH A 584 HOH A 605 SITE 1 BC3 4 GLU A 161 ARG A 165 GLU A 178 HOH A 780 SITE 1 BC4 24 VAL B 72 ALA B 73 GLY B 74 TYR B 75 SITE 2 BC4 24 ALA B 222 TYR B 223 ASP B 248 ILE B 249 SITE 3 BC4 24 LEU B 250 ASN B 251 HIS B 252 TYR B 285 SITE 4 BC4 24 TYR B 297 PHE B 299 EDO B 477 HOH B 544 SITE 5 BC4 24 HOH B 555 HOH B 604 HOH B 646 HOH B 659 SITE 6 BC4 24 HOH B 672 HOH B 716 HOH B 723 LYS Q 310 SITE 1 BC5 5 VAL B 300 TYR B 444 GLN B 452 HOH B 581 SITE 2 BC5 5 HOH B 649 SITE 1 BC6 5 GLY B 170 THR B 171 GLY B 172 GLU B 175 SITE 2 BC6 5 GLN B 314 SITE 1 BC7 5 LEU B 424 TYR B 427 ALA B 428 THR B 429 SITE 2 BC7 5 HOH B 622 SITE 1 BC8 9 ASN A 440 GLU A 442 EDO A 481 HOH B 63 SITE 2 BC8 9 VAL B 72 TRP B 449 HOH B 604 HOH B 623 SITE 3 BC8 9 SAM B6735 SITE 1 BC9 3 SER B 120 ASN B 183 GLU B 187 SITE 1 CC1 6 GLU B 154 TRP B 159 TRP B 449 ARG B 450 SITE 2 CC1 6 GLN B 453 HOH B 610 CRYST1 61.464 64.985 73.891 78.33 70.05 63.75 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016270 -0.008023 -0.005427 0.00000 SCALE2 0.000000 0.017158 -0.001047 0.00000 SCALE3 0.000000 0.000000 0.014424 0.00000