PDB Short entry for 3QYF HEADER ANTIVIRAL PROTEIN 03-MAR-11 3QYF TITLE CRYSTAL STRUCTURE OF THE CRISPR-ASSOCIATED PROTEIN SSO1393 FROM TITLE 2 SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: SSO1393; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS HELIX-TURN-HELIX, ANTIVIRAL PROTEIN, VIRAL RESISTANCE, NUCLEOTIDE- KEYWDS 2 BINDING DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PETIT,X.XU,C.CHANG,A.SAVCHENKO,A.F.YAKUNIN REVDAT 2 24-JAN-18 3QYF 1 AUTHOR REVDAT 1 23-MAR-11 3QYF 0 JRNL AUTH P.PETIT,X.XU,N.BELOGLAZOVA,G.BROWN,A.SAVCHENKO,A.F.YAKUNIN JRNL TITL CRYSTAL STRUCTURE OF THE CRISPR-ASSOCIATED PROTEIN SSO1393 JRNL TITL 2 FROM SULFOLOBUS SOLFATARICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 49041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3525 - 4.0898 1.00 4893 289 0.1681 0.1993 REMARK 3 2 4.0898 - 3.2477 1.00 4821 260 0.1547 0.1809 REMARK 3 3 3.2477 - 2.8376 0.99 4798 259 0.1734 0.2071 REMARK 3 4 2.8376 - 2.5783 0.99 4768 238 0.1736 0.2208 REMARK 3 5 2.5783 - 2.3936 0.98 4724 272 0.1721 0.2121 REMARK 3 6 2.3936 - 2.2526 0.97 4630 266 0.1631 0.2235 REMARK 3 7 2.2526 - 2.1398 0.96 4653 212 0.1630 0.2028 REMARK 3 8 2.1398 - 2.0467 0.95 4578 238 0.1636 0.2103 REMARK 3 9 2.0467 - 1.9679 0.92 4376 242 0.1807 0.2427 REMARK 3 10 1.9679 - 1.9000 0.89 4308 216 0.2003 0.2629 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 48.02 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.53670 REMARK 3 B22 (A**2) : -5.98090 REMARK 3 B33 (A**2) : 1.44420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.24700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4427 REMARK 3 ANGLE : 0.981 5978 REMARK 3 CHIRALITY : 0.072 679 REMARK 3 PLANARITY : 0.004 753 REMARK 3 DIHEDRAL : 12.646 1658 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 23.8199 43.4417 16.4068 REMARK 3 T TENSOR REMARK 3 T11: 0.0370 T22: 0.0494 REMARK 3 T33: 0.0459 T12: -0.0014 REMARK 3 T13: -0.0130 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.3870 L22: 0.9638 REMARK 3 L33: 0.5735 L12: 0.0876 REMARK 3 L13: -0.1374 L23: -0.1858 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.0022 S13: 0.0164 REMARK 3 S21: -0.0875 S22: 0.0280 S23: 0.0279 REMARK 3 S31: 0.0571 S32: -0.0092 S33: -0.0195 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50502 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.2, 0.2M CACL2, REMARK 280 30%PEG400, 4%MPD, 1/70 SUBTLISIN, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.30700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.77700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.30700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.77700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 269 REMARK 465 GLY A 270 REMARK 465 ALA A 271 REMARK 465 GLN A 272 REMARK 465 ASN A 273 REMARK 465 LYS A 274 REMARK 465 TYR A 275 REMARK 465 TYR A 276 REMARK 465 ARG A 277 REMARK 465 VAL A 278 REMARK 465 ILE A 279 REMARK 465 VAL A 280 REMARK 465 GLU A 281 REMARK 465 GLY A 282 REMARK 465 GLU A 283 REMARK 465 GLY A 284 REMARK 465 GLU A 285 REMARK 465 ARG A 286 REMARK 465 THR A 287 REMARK 465 PHE A 288 REMARK 465 ASP A 289 REMARK 465 ASN A 290 REMARK 465 GLU A 291 REMARK 465 VAL A 292 REMARK 465 GLU A 293 REMARK 465 ALA A 294 REMARK 465 TYR A 295 REMARK 465 ASN A 296 REMARK 465 TYR A 297 REMARK 465 MSE A 298 REMARK 465 GLU A 299 REMARK 465 SER A 300 REMARK 465 LYS A 301 REMARK 465 ARG A 302 REMARK 465 LYS A 303 REMARK 465 GLU A 304 REMARK 465 GLY A 305 REMARK 465 LYS A 306 REMARK 465 ASN A 307 REMARK 465 VAL A 308 REMARK 465 ARG A 309 REMARK 465 VAL A 310 REMARK 465 GLU A 311 REMARK 465 VAL A 312 REMARK 465 PRO A 313 REMARK 465 ASP A 314 REMARK 465 ARG A 315 REMARK 465 VAL A 316 REMARK 465 TYR A 317 REMARK 465 PHE A 318 REMARK 465 LEU A 319 REMARK 465 GLY A 320 REMARK 465 LEU A 321 REMARK 465 PRO B 268 REMARK 465 ILE B 269 REMARK 465 GLY B 270 REMARK 465 ALA B 271 REMARK 465 GLN B 272 REMARK 465 ASN B 273 REMARK 465 LYS B 274 REMARK 465 TYR B 275 REMARK 465 TYR B 276 REMARK 465 ARG B 277 REMARK 465 VAL B 278 REMARK 465 ILE B 279 REMARK 465 VAL B 280 REMARK 465 GLU B 281 REMARK 465 GLY B 282 REMARK 465 GLU B 283 REMARK 465 GLY B 284 REMARK 465 GLU B 285 REMARK 465 ARG B 286 REMARK 465 THR B 287 REMARK 465 PHE B 288 REMARK 465 ASP B 289 REMARK 465 ASN B 290 REMARK 465 GLU B 291 REMARK 465 VAL B 292 REMARK 465 GLU B 293 REMARK 465 ALA B 294 REMARK 465 TYR B 295 REMARK 465 ASN B 296 REMARK 465 TYR B 297 REMARK 465 MSE B 298 REMARK 465 GLU B 299 REMARK 465 SER B 300 REMARK 465 LYS B 301 REMARK 465 ARG B 302 REMARK 465 LYS B 303 REMARK 465 GLU B 304 REMARK 465 GLY B 305 REMARK 465 LYS B 306 REMARK 465 ASN B 307 REMARK 465 VAL B 308 REMARK 465 ARG B 309 REMARK 465 VAL B 310 REMARK 465 GLU B 311 REMARK 465 VAL B 312 REMARK 465 PRO B 313 REMARK 465 ASP B 314 REMARK 465 ARG B 315 REMARK 465 VAL B 316 REMARK 465 TYR B 317 REMARK 465 PHE B 318 REMARK 465 LEU B 319 REMARK 465 GLY B 320 REMARK 465 LEU B 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -1 CG CD OE1 NE2 REMARK 470 ASP A 18 CG OD1 OD2 REMARK 470 LYS A 24 CD CE NZ REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 56 CD CE NZ REMARK 470 ARG A 68 CD NE CZ NH1 NH2 REMARK 470 LYS A 84 CE NZ REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 ASP A 251 CG OD1 OD2 REMARK 470 GLN B -1 CG CD OE1 NE2 REMARK 470 ARG B 36 CZ NH1 NH2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 ASN B 45 CG OD1 ND2 REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 GLU B 230 CD OE1 OE2 REMARK 470 GLU B 231 CG CD OE1 OE2 REMARK 470 ARG B 247 CD NE CZ NH1 NH2 REMARK 470 GLU B 250 CG CD OE1 OE2 REMARK 470 ASP B 251 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 251 25.79 -150.44 REMARK 500 VAL B 145 -60.03 -121.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 322 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 131 OE1 REMARK 620 2 ASP A 195 OD2 96.7 REMARK 620 3 HOH B 466 O 83.2 81.7 REMARK 620 4 HOH B 477 O 81.7 161.1 79.4 REMARK 620 5 HOH A 498 O 89.4 130.8 147.4 68.2 REMARK 620 6 ASP A 195 OD1 103.2 51.8 133.5 146.9 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 322 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 131 OE1 REMARK 620 2 HOH B 392 O 84.8 REMARK 620 3 ASP B 195 OD2 93.6 81.2 REMARK 620 4 HOH A 431 O 81.5 77.5 158.4 REMARK 620 5 ASP B 195 OD1 98.9 131.7 50.6 150.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 322 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WTE RELATED DB: PDB REMARK 900 CRISPR ASSOCIATED PROTEIN CSA3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ALTHOUGH CRYSTALLIZATION TRIALS WERE SET UP WITH THE FULL LENGTH REMARK 999 PROTEIN, CRYSTALS ONLY GREW IF SUBTILISIN PROTEASE WAS ADDED TO THE REMARK 999 MIX. THIS COULD BE THE REASON THAT ELECTRON DENSITY MAP SHOW LARGE REMARK 999 SEGMENT OF THE C-TERMINAL RESIDUES MISSING DBREF 3QYF A 1 321 UNP Q97YD2 Q97YD2_SULSO 1 321 DBREF 3QYF B 1 321 UNP Q97YD2 Q97YD2_SULSO 1 321 SEQADV 3QYF PHE A -2 UNP Q97YD2 EXPRESSION TAG SEQADV 3QYF GLN A -1 UNP Q97YD2 EXPRESSION TAG SEQADV 3QYF GLY A 0 UNP Q97YD2 EXPRESSION TAG SEQADV 3QYF PHE B -2 UNP Q97YD2 EXPRESSION TAG SEQADV 3QYF GLN B -1 UNP Q97YD2 EXPRESSION TAG SEQADV 3QYF GLY B 0 UNP Q97YD2 EXPRESSION TAG SEQRES 1 A 324 PHE GLN GLY MSE GLU VAL HIS VAL CYS SER VAL GLY THR SEQRES 2 A 324 SER LEU LEU LYS ASN SER LEU ASP ASP ASP ASN VAL ARG SEQRES 3 A 324 LYS GLU ILE GLU ARG LEU GLY LEU LYS ASP TRP ASP ARG SEQRES 4 A 324 LEU LYS PHE ASP ASP ASP ARG GLN ASN ARG ILE LYS GLU SEQRES 5 A 324 ASN PHE ASP SER LEU ARG LYS MSE LEU LEU LYS PHE ILE SEQRES 6 A 324 ARG SER LYS GLY ARG ARG ALA SER ALA GLU LEU ASP SER SEQRES 7 A 324 LEU PHE SER THR PHE GLU LYS LEU LYS HIS ASN LYS SER SEQRES 8 A 324 GLU ILE TYR VAL PHE LEU TYR SER THR ASN THR SER ASN SEQRES 9 A 324 SER GLN LEU ALA GLY GLU VAL ILE ARG ASP TYR LEU ILE SEQRES 10 A 324 GLU GLU GLY ILE ARG SER GLU LEU VAL THR VAL LYS THR SEQRES 11 A 324 ILE SER SER GLU GLU ASN PHE TYR GLU GLY ILE VAL ASP SEQRES 12 A 324 LEU PHE ASP LYS VAL ILE TYR ARG ILE LEU LYS PHE LYS SEQRES 13 A 324 GLU GLN ASP ASN GLU VAL TYR ILE ASN ALA THR PRO GLY SEQRES 14 A 324 LEU LYS PRO GLU SER ILE PHE LEU THR LEU ALA GLY LEU SEQRES 15 A 324 LEU ALA GLY ALA ASP LEU ILE TYR TYR LYS TYR GLN GLU SEQRES 16 A 324 PHE ASN ASP VAL VAL ILE LEU PRO SER PRO PRO ILE THR SEQRES 17 A 324 ILE ARG PRO LYS TYR LEU ASP TRP LEU ILE ARG PHE ALA SEQRES 18 A 324 ILE SER GLY TYR THR LEU SER GLU LYS ARG ALA GLU GLU SEQRES 19 A 324 LEU GLY ILE PRO VAL ARG LEU LEU GLU ALA LYS MSE LEU SEQRES 20 A 324 VAL GLU ARG LYS GLY GLU ASP ALA TYR ARG LEU LYS ASP SEQRES 21 A 324 TRP VAL ARG LYS LEU LEU GLY ILE TYR LEU PRO ILE GLY SEQRES 22 A 324 ALA GLN ASN LYS TYR TYR ARG VAL ILE VAL GLU GLY GLU SEQRES 23 A 324 GLY GLU ARG THR PHE ASP ASN GLU VAL GLU ALA TYR ASN SEQRES 24 A 324 TYR MSE GLU SER LYS ARG LYS GLU GLY LYS ASN VAL ARG SEQRES 25 A 324 VAL GLU VAL PRO ASP ARG VAL TYR PHE LEU GLY LEU SEQRES 1 B 324 PHE GLN GLY MSE GLU VAL HIS VAL CYS SER VAL GLY THR SEQRES 2 B 324 SER LEU LEU LYS ASN SER LEU ASP ASP ASP ASN VAL ARG SEQRES 3 B 324 LYS GLU ILE GLU ARG LEU GLY LEU LYS ASP TRP ASP ARG SEQRES 4 B 324 LEU LYS PHE ASP ASP ASP ARG GLN ASN ARG ILE LYS GLU SEQRES 5 B 324 ASN PHE ASP SER LEU ARG LYS MSE LEU LEU LYS PHE ILE SEQRES 6 B 324 ARG SER LYS GLY ARG ARG ALA SER ALA GLU LEU ASP SER SEQRES 7 B 324 LEU PHE SER THR PHE GLU LYS LEU LYS HIS ASN LYS SER SEQRES 8 B 324 GLU ILE TYR VAL PHE LEU TYR SER THR ASN THR SER ASN SEQRES 9 B 324 SER GLN LEU ALA GLY GLU VAL ILE ARG ASP TYR LEU ILE SEQRES 10 B 324 GLU GLU GLY ILE ARG SER GLU LEU VAL THR VAL LYS THR SEQRES 11 B 324 ILE SER SER GLU GLU ASN PHE TYR GLU GLY ILE VAL ASP SEQRES 12 B 324 LEU PHE ASP LYS VAL ILE TYR ARG ILE LEU LYS PHE LYS SEQRES 13 B 324 GLU GLN ASP ASN GLU VAL TYR ILE ASN ALA THR PRO GLY SEQRES 14 B 324 LEU LYS PRO GLU SER ILE PHE LEU THR LEU ALA GLY LEU SEQRES 15 B 324 LEU ALA GLY ALA ASP LEU ILE TYR TYR LYS TYR GLN GLU SEQRES 16 B 324 PHE ASN ASP VAL VAL ILE LEU PRO SER PRO PRO ILE THR SEQRES 17 B 324 ILE ARG PRO LYS TYR LEU ASP TRP LEU ILE ARG PHE ALA SEQRES 18 B 324 ILE SER GLY TYR THR LEU SER GLU LYS ARG ALA GLU GLU SEQRES 19 B 324 LEU GLY ILE PRO VAL ARG LEU LEU GLU ALA LYS MSE LEU SEQRES 20 B 324 VAL GLU ARG LYS GLY GLU ASP ALA TYR ARG LEU LYS ASP SEQRES 21 B 324 TRP VAL ARG LYS LEU LEU GLY ILE TYR LEU PRO ILE GLY SEQRES 22 B 324 ALA GLN ASN LYS TYR TYR ARG VAL ILE VAL GLU GLY GLU SEQRES 23 B 324 GLY GLU ARG THR PHE ASP ASN GLU VAL GLU ALA TYR ASN SEQRES 24 B 324 TYR MSE GLU SER LYS ARG LYS GLU GLY LYS ASN VAL ARG SEQRES 25 B 324 VAL GLU VAL PRO ASP ARG VAL TYR PHE LEU GLY LEU MODRES 3QYF MSE A 1 MET SELENOMETHIONINE MODRES 3QYF MSE A 57 MET SELENOMETHIONINE MODRES 3QYF MSE A 243 MET SELENOMETHIONINE MODRES 3QYF MSE B 1 MET SELENOMETHIONINE MODRES 3QYF MSE B 57 MET SELENOMETHIONINE MODRES 3QYF MSE B 243 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 57 8 HET MSE A 243 8 HET MSE B 1 8 HET MSE B 57 8 HET MSE B 243 8 HET MG A 322 1 HET MG B 322 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *398(H2 O) HELIX 1 1 THR A 10 SER A 16 1 7 HELIX 2 2 ASP A 19 LEU A 29 1 11 HELIX 3 3 ASP A 33 LEU A 37 5 5 HELIX 4 4 ARG A 43 ASN A 50 1 8 HELIX 5 5 ASN A 50 GLY A 66 1 17 HELIX 6 6 ARG A 67 ALA A 69 5 3 HELIX 7 7 SER A 70 LYS A 84 1 15 HELIX 8 8 ASN A 86 SER A 88 5 3 HELIX 9 9 THR A 99 GLU A 116 1 18 HELIX 10 10 SER A 130 VAL A 145 1 16 HELIX 11 11 VAL A 145 GLN A 155 1 11 HELIX 12 12 LEU A 167 ALA A 181 1 15 HELIX 13 13 ARG A 207 GLY A 221 1 15 HELIX 14 14 GLU A 226 LEU A 232 1 7 HELIX 15 15 PRO A 235 LYS A 242 1 8 HELIX 16 16 LYS A 256 GLY A 264 1 9 HELIX 17 17 THR B 10 LEU B 17 1 8 HELIX 18 18 ASP B 19 LEU B 29 1 11 HELIX 19 19 ASP B 33 LEU B 37 5 5 HELIX 20 20 ARG B 43 ASN B 50 1 8 HELIX 21 21 ASN B 50 GLY B 66 1 17 HELIX 22 22 ARG B 67 ALA B 69 5 3 HELIX 23 23 SER B 70 LYS B 84 1 15 HELIX 24 24 ASN B 86 SER B 88 5 3 HELIX 25 25 THR B 99 GLU B 116 1 18 HELIX 26 26 SER B 130 VAL B 145 1 16 HELIX 27 27 VAL B 145 GLN B 155 1 11 HELIX 28 28 LEU B 167 ALA B 181 1 15 HELIX 29 29 ARG B 207 GLY B 221 1 15 HELIX 30 30 GLU B 226 LEU B 232 1 7 HELIX 31 31 PRO B 235 LYS B 242 1 8 HELIX 32 32 LYS B 256 GLY B 264 1 9 SHEET 1 A 6 ARG A 119 VAL A 125 0 SHEET 2 A 6 ILE A 90 THR A 97 1 N LEU A 94 O GLU A 121 SHEET 3 A 6 GLU A 2 SER A 7 1 N HIS A 4 O PHE A 93 SHEET 4 A 6 GLU A 158 ASN A 162 1 O TYR A 160 N VAL A 3 SHEET 5 A 6 LEU A 185 TYR A 190 1 O TYR A 187 N ILE A 161 SHEET 6 A 6 ASP A 195 LEU A 199 -1 O VAL A 197 N TYR A 188 SHEET 1 B 2 ILE A 204 ILE A 206 0 SHEET 2 B 2 ILE B 204 ILE B 206 -1 O THR B 205 N THR A 205 SHEET 1 C 3 THR A 223 SER A 225 0 SHEET 2 C 3 ALA A 252 LEU A 255 -1 O TYR A 253 N LEU A 224 SHEET 3 C 3 VAL A 245 LYS A 248 -1 N GLU A 246 O ARG A 254 SHEET 1 D 6 ARG B 119 VAL B 125 0 SHEET 2 D 6 ILE B 90 THR B 97 1 N LEU B 94 O GLU B 121 SHEET 3 D 6 GLU B 2 SER B 7 1 N HIS B 4 O PHE B 93 SHEET 4 D 6 GLU B 158 ASN B 162 1 O TYR B 160 N VAL B 3 SHEET 5 D 6 LEU B 185 TYR B 190 1 O TYR B 187 N ILE B 161 SHEET 6 D 6 ASP B 195 LEU B 199 -1 O VAL B 197 N TYR B 188 SHEET 1 E 3 THR B 223 SER B 225 0 SHEET 2 E 3 ALA B 252 LEU B 255 -1 O TYR B 253 N LEU B 224 SHEET 3 E 3 VAL B 245 LYS B 248 -1 N GLU B 246 O ARG B 254 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C LYS A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N LEU A 58 1555 1555 1.33 LINK C LYS A 242 N MSE A 243 1555 1555 1.32 LINK C MSE A 243 N LEU A 244 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C LYS B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N LEU B 58 1555 1555 1.33 LINK C LYS B 242 N MSE B 243 1555 1555 1.33 LINK C MSE B 243 N LEU B 244 1555 1555 1.33 LINK OE1 GLU B 131 MG MG A 322 1555 1555 2.38 LINK OE1 GLU A 131 MG MG B 322 1555 1555 2.39 LINK OD2 ASP A 195 MG MG A 322 1555 1555 2.45 LINK MG MG B 322 O HOH B 392 1555 1555 2.51 LINK OD2 ASP B 195 MG MG B 322 1555 1555 2.52 LINK MG MG B 322 O HOH A 431 1555 1555 2.52 LINK MG MG A 322 O HOH B 466 1555 1555 2.53 LINK MG MG A 322 O HOH B 477 1555 1555 2.54 LINK MG MG A 322 O HOH A 498 1555 1555 2.58 LINK OD1 ASP A 195 MG MG A 322 1555 1555 2.59 LINK OD1 ASP B 195 MG MG B 322 1555 1555 2.62 CISPEP 1 GLY B 249 GLU B 250 0 -4.38 SITE 1 AC1 5 ASP A 195 HOH A 498 GLU B 131 HOH B 466 SITE 2 AC1 5 HOH B 477 SITE 1 AC2 4 GLU A 131 HOH A 431 ASP B 195 HOH B 392 CRYST1 120.614 81.554 70.155 90.00 108.30 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008291 0.000000 0.002742 0.00000 SCALE2 0.000000 0.012262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015014 0.00000