PDB Short entry for 3QZ4 HEADER HYDROLASE 04-MAR-11 3QZ4 TITLE CRYSTAL STRUCTURE OF AN ENDO-1,4-BETA-XYLANASE D (BT_3675) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.74 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 24-333; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_3675; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 5-BLADED BETA-PROPELLER FOLD, XYLAN DEGRADATION, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3QZ4 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3QZ4 1 REMARK REVDAT 2 20-JUL-11 3QZ4 1 KEYWDS REVDAT 1 06-APR-11 3QZ4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AN ENDO-1,4-BETA-XYLANASE D (BT_3675) JRNL TITL 2 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.74 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 65807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3337 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4817 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2321 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4598 REMARK 3 BIN R VALUE (WORKING SET) : 0.2309 REMARK 3 BIN FREE R VALUE : 0.2574 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.55 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 219 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 668 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.16380 REMARK 3 B22 (A**2) : 5.56600 REMARK 3 B33 (A**2) : -0.40230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.95200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5107 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6969 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2186 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 118 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 737 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5077 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 6 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 641 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6592 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.42 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.59 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|28 - A|333 } REMARK 3 ORIGIN FOR THE GROUP (A): 29.9788 -22.8050 35.2386 REMARK 3 T TENSOR REMARK 3 T11: -0.0304 T22: -0.2466 REMARK 3 T33: -0.2019 T12: -0.0039 REMARK 3 T13: -0.0839 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.9210 L22: 7.0043 REMARK 3 L33: 1.6131 L12: -0.1614 REMARK 3 L13: 0.4305 L23: 0.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: 0.1255 S13: 0.0267 REMARK 3 S21: -1.0763 S22: -0.1557 S23: -0.1632 REMARK 3 S31: -0.2215 S32: 0.0743 S33: 0.2017 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|28 - B|333 } REMARK 3 ORIGIN FOR THE GROUP (A): 37.6525 0.7185 63.9662 REMARK 3 T TENSOR REMARK 3 T11: -0.0540 T22: -0.1328 REMARK 3 T33: -0.0578 T12: -0.0032 REMARK 3 T13: -0.0756 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.9319 L22: 3.3212 REMARK 3 L33: 1.0580 L12: 0.1607 REMARK 3 L13: 0.4462 L23: 0.2043 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.0277 S13: 0.0217 REMARK 3 S21: -0.2888 S22: -0.0176 S23: 0.2506 REMARK 3 S31: 0.0010 S32: -0.0171 S33: 0.0132 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 3. ETHYLENE GLYCOLS (EDO) AND HEPES (EPE) REMARK 3 FROM THE CRYSTALLIZATION/CRYO CONDITIONS HAVE BEEN MODELED IN REMARK 3 THE STRUCTURE. 4. THE FIRST FIVE RESIDUES OF EACH PROTOMER ARE REMARK 3 DISODERED AND WERE NOT MODELED. 5. TWO UNKNOWN IONS (UNX) HAVE REMARK 3 BEEN MODELED IN EACH PROTOMER. X-RAY FLUORESCENCE EMISSION REMARK 3 SPECTRA, COORDINATION GEOMETRY ANDANOMALOUS SIGNAL AT THE MAD REMARK 3 WAVELENGTHS WERE INCONCLUSIVE AS TO THE ION IDENTITIES. FOR THE REMARK 3 SITE NEAR HIS-279, CALCIUM IS MODELED IN THE 1WL7 HOMOLOG AND A REMARK 3 CHLORIDE IS MODELED IN THE 1GYH/1GYE HOMOLOG WITH A COMMENT IN REMARK 3 THE PAPER THAT CHLORIDE IS ALSO A POSSIBILITY. THE UNKNOWN ION REMARK 3 UNX-334 SHOWS COORDINATION DISTANCES LONGER THAN IS TYPICAL FOR REMARK 3 CALCIUM BUT SHORTER THAN WOULD BE EXPECTED FOR CHLORIDE. THE REMARK 3 UNKNOWN IONS UNX-335 MIGHT BE MAGNESIUM OR CALCIUM. HOWEVER, REMARK 3 NEITHER ION WAS PRESENT IN THE PROTEIN BUFFER OR CRYSTALLIZATION REMARK 3 REAGENT. 6. THE REFINEMENT WAS RESTRAINED AGAINST THE MAD PHASES. REMARK 4 REMARK 4 3QZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369,0.97915,0.97901 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65872 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 29.865 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : 0.82500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.40% POLYETHYLENE GLYCOL 8000, 0.1M REMARK 280 HEPES PH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.62600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY PROVIDES REMARK 300 SUPPORTING EVIDENCE THAT A MONOMER IS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 24 REMARK 465 ASN A 25 REMARK 465 LYS A 26 REMARK 465 LYS A 27 REMARK 465 GLY B 0 REMARK 465 GLN B 24 REMARK 465 ASN B 25 REMARK 465 LYS B 26 REMARK 465 LYS B 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 112 CE NZ REMARK 470 LYS A 127 CE NZ REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 LYS A 288 NZ REMARK 470 GLU A 319 CB CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 ILE A 330 CB CG1 CG2 CD1 REMARK 470 LYS B 74 CD CE NZ REMARK 470 LYS B 127 CE NZ REMARK 470 LYS B 261 CE NZ REMARK 470 LYS B 271 CD CE NZ REMARK 470 LYS B 300 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX B 335 O HOH B 913 2.10 REMARK 500 UNK UNX B 335 O HOH B 915 2.11 REMARK 500 O VAL B 166 UNK UNX B 335 2.12 REMARK 500 UNK UNX A 335 O HOH A 893 2.14 REMARK 500 UNK UNX A 335 O HOH A 891 2.14 REMARK 500 UNK UNX B 335 O HOH B 914 2.15 REMARK 500 O VAL A 166 UNK UNX A 335 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 73.21 39.88 REMARK 500 THR A 205 114.18 -37.74 REMARK 500 THR A 213 -105.18 -120.78 REMARK 500 GLU A 218 -166.82 -171.23 REMARK 500 ASP A 236 -173.13 71.78 REMARK 500 ALA A 278 -156.28 -153.82 REMARK 500 ASP A 289 51.70 -91.57 REMARK 500 LEU B 76 -7.16 79.83 REMARK 500 ALA B 101 76.46 36.27 REMARK 500 THR B 213 -110.40 -118.28 REMARK 500 GLU B 218 -165.08 -171.29 REMARK 500 ASP B 236 -176.21 72.64 REMARK 500 ALA B 278 -156.47 -163.86 REMARK 500 ASP B 305 74.42 -150.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 346 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396215 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 24-333 OF THE TARGET REMARK 999 SEQUENCE. DBREF 3QZ4 A 24 333 UNP Q8A1I6 Q8A1I6_BACTN 24 333 DBREF 3QZ4 B 24 333 UNP Q8A1I6 Q8A1I6_BACTN 24 333 SEQADV 3QZ4 GLY A 0 UNP Q8A1I6 EXPRESSION TAG SEQADV 3QZ4 GLY B 0 UNP Q8A1I6 EXPRESSION TAG SEQRES 1 A 311 GLY GLN ASN LYS LYS SER GLY ASN PRO ILE LEU PRO GLY SEQRES 2 A 311 PHE HIS ALA ASP PRO GLU VAL LEU TYR SER HIS GLN THR SEQRES 3 A 311 LYS ARG TYR TYR ILE TYR PRO THR SER ASP GLY PHE PRO SEQRES 4 A 311 GLY TRP GLY GLY SER TYR PHE LYS VAL PHE SER SER LYS SEQRES 5 A 311 ASN LEU LYS THR TRP LYS GLU GLU THR VAL ILE LEU GLU SEQRES 6 A 311 MSE GLY LYS ASN VAL SER TRP ALA ASN GLY ASN ALA TRP SEQRES 7 A 311 ALA PRO CYS ILE GLU GLU LYS LYS ILE ASP GLY LYS TYR SEQRES 8 A 311 LYS TYR PHE PHE TYR TYR SER ALA ASN PRO THR THR ASN SEQRES 9 A 311 LYS GLY LYS GLN ILE GLY VAL ALA VAL ALA ASP SER PRO SEQRES 10 A 311 THR GLY PRO PHE THR ASP LEU GLY LYS PRO ILE ILE THR SEQRES 11 A 311 SER SER PRO THR GLY ARG GLY GLN GLN ILE ASP VAL ASP SEQRES 12 A 311 VAL PHE THR ASP PRO VAL SER GLY LYS SER TYR LEU TYR SEQRES 13 A 311 TRP GLY ASN GLY TYR MSE ALA GLY ALA GLU LEU ASN ASP SEQRES 14 A 311 ASP MSE LEU SER ILE LYS GLU GLU THR THR VAL VAL LEU SEQRES 15 A 311 THR PRO LYS GLY GLY THR LEU GLN THR TYR ALA TYR ARG SEQRES 16 A 311 GLU ALA PRO TYR VAL ILE TYR ARG LYS GLY ILE TYR TYR SEQRES 17 A 311 PHE PHE TRP SER VAL ASP ASP THR GLY SER PRO ASN TYR SEQRES 18 A 311 HIS VAL VAL TYR GLY THR ALA GLN SER PRO LEU GLY PRO SEQRES 19 A 311 ILE GLU VAL ALA LYS GLU PRO ILE VAL LEU ILE GLN ASN SEQRES 20 A 311 PRO LYS GLU GLU ILE TYR GLY PRO ALA HIS ASN SER ILE SEQRES 21 A 311 LEU GLN VAL PRO GLY LYS ASP LYS TRP TYR ILE VAL TYR SEQRES 22 A 311 HIS ARG ILE ASN LYS ASN HIS LEU ASN ASP GLY PRO GLY SEQRES 23 A 311 TRP HIS ARG GLU VAL CYS ILE ASP ARG MSE GLU PHE ASN SEQRES 24 A 311 PRO ASP GLY THR ILE LYS GLN VAL ILE PRO THR PRO SEQRES 1 B 311 GLY GLN ASN LYS LYS SER GLY ASN PRO ILE LEU PRO GLY SEQRES 2 B 311 PHE HIS ALA ASP PRO GLU VAL LEU TYR SER HIS GLN THR SEQRES 3 B 311 LYS ARG TYR TYR ILE TYR PRO THR SER ASP GLY PHE PRO SEQRES 4 B 311 GLY TRP GLY GLY SER TYR PHE LYS VAL PHE SER SER LYS SEQRES 5 B 311 ASN LEU LYS THR TRP LYS GLU GLU THR VAL ILE LEU GLU SEQRES 6 B 311 MSE GLY LYS ASN VAL SER TRP ALA ASN GLY ASN ALA TRP SEQRES 7 B 311 ALA PRO CYS ILE GLU GLU LYS LYS ILE ASP GLY LYS TYR SEQRES 8 B 311 LYS TYR PHE PHE TYR TYR SER ALA ASN PRO THR THR ASN SEQRES 9 B 311 LYS GLY LYS GLN ILE GLY VAL ALA VAL ALA ASP SER PRO SEQRES 10 B 311 THR GLY PRO PHE THR ASP LEU GLY LYS PRO ILE ILE THR SEQRES 11 B 311 SER SER PRO THR GLY ARG GLY GLN GLN ILE ASP VAL ASP SEQRES 12 B 311 VAL PHE THR ASP PRO VAL SER GLY LYS SER TYR LEU TYR SEQRES 13 B 311 TRP GLY ASN GLY TYR MSE ALA GLY ALA GLU LEU ASN ASP SEQRES 14 B 311 ASP MSE LEU SER ILE LYS GLU GLU THR THR VAL VAL LEU SEQRES 15 B 311 THR PRO LYS GLY GLY THR LEU GLN THR TYR ALA TYR ARG SEQRES 16 B 311 GLU ALA PRO TYR VAL ILE TYR ARG LYS GLY ILE TYR TYR SEQRES 17 B 311 PHE PHE TRP SER VAL ASP ASP THR GLY SER PRO ASN TYR SEQRES 18 B 311 HIS VAL VAL TYR GLY THR ALA GLN SER PRO LEU GLY PRO SEQRES 19 B 311 ILE GLU VAL ALA LYS GLU PRO ILE VAL LEU ILE GLN ASN SEQRES 20 B 311 PRO LYS GLU GLU ILE TYR GLY PRO ALA HIS ASN SER ILE SEQRES 21 B 311 LEU GLN VAL PRO GLY LYS ASP LYS TRP TYR ILE VAL TYR SEQRES 22 B 311 HIS ARG ILE ASN LYS ASN HIS LEU ASN ASP GLY PRO GLY SEQRES 23 B 311 TRP HIS ARG GLU VAL CYS ILE ASP ARG MSE GLU PHE ASN SEQRES 24 B 311 PRO ASP GLY THR ILE LYS GLN VAL ILE PRO THR PRO MODRES 3QZ4 MSE A 88 MET SELENOMETHIONINE MODRES 3QZ4 MSE A 184 MET SELENOMETHIONINE MODRES 3QZ4 MSE A 193 MET SELENOMETHIONINE MODRES 3QZ4 MSE A 318 MET SELENOMETHIONINE MODRES 3QZ4 MSE B 88 MET SELENOMETHIONINE MODRES 3QZ4 MSE B 184 MET SELENOMETHIONINE MODRES 3QZ4 MSE B 193 MET SELENOMETHIONINE MODRES 3QZ4 MSE B 318 MET SELENOMETHIONINE HET MSE A 88 8 HET MSE A 184 8 HET MSE A 193 8 HET MSE A 318 8 HET MSE B 88 8 HET MSE B 184 8 HET MSE B 193 8 HET MSE B 318 8 HET UNX A 334 1 HET UNX A 335 1 HET EPE A 338 15 HET EDO A 339 4 HET EDO A 340 4 HET EDO A 344 4 HET EDO A 345 4 HET UNX B 334 1 HET UNX B 335 1 HET EPE B 337 15 HET EDO B 340 4 HET EDO B 341 4 HET EDO B 342 4 HET EDO B 343 8 HET EDO B 346 4 HETNAM MSE SELENOMETHIONINE HETNAM UNX UNKNOWN ATOM OR ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EPE HEPES HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 UNX 4(X) FORMUL 5 EPE 2(C8 H18 N2 O4 S) FORMUL 6 EDO 9(C2 H6 O2) FORMUL 18 HOH *668(H2 O) HELIX 1 1 PHE A 60 GLY A 64 5 5 HELIX 2 2 LYS A 197 THR A 201 5 5 HELIX 3 3 ASN A 269 GLU A 273 5 5 HELIX 4 4 LYS A 300 LEU A 303 5 4 HELIX 5 5 GLY A 306 TRP A 309 5 4 HELIX 6 6 PHE B 60 GLY B 64 5 5 HELIX 7 7 LYS B 197 THR B 201 5 5 HELIX 8 8 ASN B 269 GLU B 273 5 5 HELIX 9 9 LYS B 300 LEU B 303 5 4 HELIX 10 10 GLY B 306 TRP B 309 5 4 SHEET 1 A 4 HIS A 37 SER A 45 0 SHEET 2 A 4 ARG A 50 SER A 57 -1 O THR A 56 N ALA A 38 SHEET 3 A 4 PHE A 71 SER A 73 -1 O SER A 73 N TYR A 51 SHEET 4 A 4 LYS A 80 GLU A 81 -1 O LYS A 80 N SER A 72 SHEET 1 B 2 TYR A 67 PHE A 68 0 SHEET 2 B 2 LEU A 86 GLU A 87 -1 O LEU A 86 N PHE A 68 SHEET 1 C 4 ALA A 95 ILE A 109 0 SHEET 2 C 4 LYS A 112 PRO A 123 -1 O LYS A 112 N ILE A 109 SHEET 3 C 4 GLN A 130 ALA A 136 -1 O ALA A 134 N PHE A 117 SHEET 4 C 4 THR A 144 ASP A 145 -1 O THR A 144 N VAL A 135 SHEET 1 D 4 ASP A 165 THR A 168 0 SHEET 2 D 4 SER A 175 TRP A 179 -1 O TYR A 176 N PHE A 167 SHEET 3 D 4 ALA A 185 GLU A 188 -1 O ALA A 187 N LEU A 177 SHEET 4 D 4 VAL A 202 VAL A 203 -1 O VAL A 202 N GLY A 186 SHEET 1 E 4 GLU A 218 ARG A 225 0 SHEET 2 E 4 ILE A 228 VAL A 235 -1 O PHE A 232 N TYR A 221 SHEET 3 E 4 HIS A 244 ALA A 250 -1 O GLY A 248 N PHE A 231 SHEET 4 E 4 GLU A 258 LEU A 266 -1 O GLU A 258 N THR A 249 SHEET 1 F 3 TYR A 275 GLN A 284 0 SHEET 2 F 3 TRP A 291 ILE A 298 -1 O ILE A 298 N TYR A 275 SHEET 3 F 3 ARG A 311 MSE A 318 -1 O CYS A 314 N TYR A 295 SHEET 1 G 4 HIS B 37 SER B 45 0 SHEET 2 G 4 ARG B 50 SER B 57 -1 O THR B 56 N ALA B 38 SHEET 3 G 4 PHE B 71 SER B 73 -1 O SER B 73 N TYR B 51 SHEET 4 G 4 LYS B 80 GLU B 81 -1 O LYS B 80 N SER B 72 SHEET 1 H 2 TYR B 67 PHE B 68 0 SHEET 2 H 2 LEU B 86 GLU B 87 -1 O LEU B 86 N PHE B 68 SHEET 1 I 4 ALA B 95 ILE B 109 0 SHEET 2 I 4 LYS B 112 PRO B 123 -1 O LYS B 112 N ILE B 109 SHEET 3 I 4 GLN B 130 ALA B 136 -1 O ALA B 134 N PHE B 117 SHEET 4 I 4 THR B 144 ASP B 145 -1 O THR B 144 N VAL B 135 SHEET 1 J 4 ASP B 165 THR B 168 0 SHEET 2 J 4 SER B 175 TRP B 179 -1 O TYR B 176 N PHE B 167 SHEET 3 J 4 ALA B 185 GLU B 188 -1 O ALA B 185 N TRP B 179 SHEET 4 J 4 VAL B 202 VAL B 203 -1 O VAL B 202 N GLY B 186 SHEET 1 K 4 GLU B 218 ARG B 225 0 SHEET 2 K 4 ILE B 228 VAL B 235 -1 O PHE B 232 N TYR B 221 SHEET 3 K 4 HIS B 244 ALA B 250 -1 O GLY B 248 N PHE B 231 SHEET 4 K 4 GLU B 258 LEU B 266 -1 O GLU B 258 N THR B 249 SHEET 1 L 3 ALA B 278 GLN B 284 0 SHEET 2 L 3 TRP B 291 ILE B 298 -1 O VAL B 294 N SER B 281 SHEET 3 L 3 ARG B 311 MSE B 318 -1 O ASP B 316 N ILE B 293 LINK C GLU A 87 N MSE A 88 1555 1555 1.34 LINK C MSE A 88 N GLY A 89 1555 1555 1.34 LINK C TYR A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N ALA A 185 1555 1555 1.33 LINK C ASP A 192 N MSE A 193 1555 1555 1.37 LINK C MSE A 193 N LEU A 194 1555 1555 1.33 LINK C ARG A 317 N MSE A 318 1555 1555 1.34 LINK C MSE A 318 N GLU A 319 1555 1555 1.34 LINK C GLU B 87 N MSE B 88 1555 1555 1.35 LINK C MSE B 88 N GLY B 89 1555 1555 1.33 LINK C TYR B 183 N MSE B 184 1555 1555 1.33 LINK C MSE B 184 N ALA B 185 1555 1555 1.34 LINK C ASP B 192 N MSE B 193 1555 1555 1.37 LINK C MSE B 193 N LEU B 194 1555 1555 1.35 LINK C ARG B 317 N MSE B 318 1555 1555 1.34 LINK C MSE B 318 N GLU B 319 1555 1555 1.32 CISPEP 1 ASN A 30 PRO A 31 0 0.05 CISPEP 2 GLY A 141 PRO A 142 0 2.45 CISPEP 3 GLY A 255 PRO A 256 0 2.40 CISPEP 4 ASN B 30 PRO B 31 0 -3.55 CISPEP 5 GLY B 141 PRO B 142 0 1.02 CISPEP 6 GLY B 255 PRO B 256 0 3.36 SITE 1 AC1 13 ASP A 39 TRP A 63 TRP A 100 GLN A 160 SITE 2 AC1 13 ILE A 162 ARG A 311 HOH A 631 HOH A 647 SITE 3 AC1 13 HOH A 703 HOH A 769 HOH A 792 GLY B 62 SITE 4 AC1 13 TRP B 309 SITE 1 AC2 6 SER A 153 PRO A 155 GLU A 198 HOH A 419 SITE 2 AC2 6 HOH A 711 HOH A 725 SITE 1 AC3 4 GLY A 35 PHE A 36 HOH A 494 HOH A 601 SITE 1 AC4 4 SER A 66 GLU A 87 MSE A 88 ASN A 96 SITE 1 AC5 14 GLY A 62 TRP A 309 ASP B 39 TRP B 63 SITE 2 AC5 14 TRP B 100 GLN B 160 ILE B 162 ARG B 311 SITE 3 AC5 14 HOH B 391 HOH B 412 HOH B 583 HOH B 589 SITE 4 AC5 14 HOH B 764 HOH B1004 SITE 1 AC6 4 SER B 153 PRO B 155 GLU B 198 THR B 201 SITE 1 AC7 4 TYR B 51 LYS B 290 TYR B 292 HOH B 924 SITE 1 AC8 7 LYS B 107 GLY B 173 LYS B 174 SER B 175 SITE 2 AC8 7 LEU B 189 ASN B 190 HOH B 744 SITE 1 AC9 5 TYR B 67 GLU B 87 HOH B 484 HOH B 646 SITE 2 AC9 5 HOH B 682 SITE 1 BC1 7 LEU B 76 LYS B 77 TYR B 292 ILE B 315 SITE 2 BC1 7 HOH B 540 HOH B 746 HOH B 888 CRYST1 51.163 99.252 65.003 90.00 97.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019545 0.000000 0.002719 0.00000 SCALE2 0.000000 0.010075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015532 0.00000