PDB Short entry for 3R88 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 23-MAR-11 3R88 TITLE ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (TRPD) FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS (COMPLEX WITH INHIBITOR ACS145) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MT2248, MTCY190.03C, RV2192C, TRPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, ANTHRANILIC ACIDS, MAGNESIUM, KEYWDS 2 TRYPTOPHAN, INHIBITOR, TRANSFERASE, MAGNESIUM BINDING PHOSPHORIBOSYL KEYWDS 3 PYROPHOSPHATE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.CASTELL,F.L.SHORT,J.S.LOTT REVDAT 7 21-FEB-24 3R88 1 HETSYN REVDAT 6 29-JUL-20 3R88 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE REVDAT 5 08-NOV-17 3R88 1 REMARK REVDAT 4 27-NOV-13 3R88 1 JRNL REVDAT 3 10-APR-13 3R88 1 JRNL REVDAT 2 20-FEB-13 3R88 1 JRNL REVDAT 1 26-SEP-12 3R88 0 JRNL AUTH A.CASTELL,F.L.SHORT,G.L.EVANS,T.V.COOKSON,E.M.BULLOCH, JRNL AUTH 2 D.D.JOSEPH,C.E.LEE,E.J.PARKER,E.N.BAKER,J.S.LOTT JRNL TITL THE SUBSTRATE CAPTURE MECHANISM OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE PROVIDES JRNL TITL 3 A MODE FOR INHIBITION. JRNL REF BIOCHEMISTRY V. 52 1776 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23363292 JRNL DOI 10.1021/BI301387M REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 68342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5006 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 266 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 689 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.203 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5133 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7010 ; 1.423 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 684 ; 5.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;33.604 ;22.574 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;12.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;17.423 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 820 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3918 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3398 ; 0.754 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5374 ; 1.389 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1735 ; 2.361 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1636 ; 3.862 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3R88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000064612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71917 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 58.864 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65700 REMARK 200 R SYM FOR SHELL (I) : 0.65700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACODYLATE, 9% PEG-6000, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.15600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.42450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.15600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.42450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 VAL A 24 REMARK 465 SER A 332 REMARK 465 ARG A 333 REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 LYS B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 VAL B 24 REMARK 465 SER B 332 REMARK 465 ARG B 333 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 113 O HOH A 633 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 73 102.06 88.87 REMARK 500 ASP A 251 44.37 -87.97 REMARK 500 THR A 257 -165.22 -171.53 REMARK 500 ALA B 73 100.53 91.05 REMARK 500 ASP B 251 47.18 -90.73 REMARK 500 THR B 257 -163.90 -170.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 119 OG REMARK 620 2 GLU A 252 OE2 99.1 REMARK 620 3 PRP A 401 O1A 92.3 168.6 REMARK 620 4 PRP A 401 O3B 90.5 87.4 91.3 REMARK 620 5 HOH A 770 O 84.0 84.9 97.6 169.7 REMARK 620 6 HOH A 773 O 179.6 80.8 87.9 89.8 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 GLU A 252 OE2 93.5 REMARK 620 3 HOH A 620 O 90.8 115.8 REMARK 620 4 HOH A 771 O 86.7 151.6 92.6 REMARK 620 5 HOH A 772 O 168.3 77.1 87.2 104.9 REMARK 620 6 HOH A 773 O 80.8 71.5 169.4 80.6 102.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 119 OG REMARK 620 2 GLU B 252 OE2 92.2 REMARK 620 3 PRP B 401 O3B 93.7 88.0 REMARK 620 4 PRP B 401 O1A 92.8 174.9 93.0 REMARK 620 5 HOH B 503 O 82.2 83.1 170.1 96.3 REMARK 620 6 HOH B 539 O 174.5 85.8 91.4 89.2 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 251 OD1 REMARK 620 2 GLU B 252 OE2 97.8 REMARK 620 3 HOH B 539 O 80.2 76.0 REMARK 620 4 HOH B 619 O 87.4 140.4 143.2 REMARK 620 5 HOH B 767 O 166.8 76.8 109.6 89.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QQS RELATED DB: PDB REMARK 900 IN COMPLEX WITH INHIBITOR ACS172 REMARK 900 RELATED ID: 3QR9 RELATED DB: PDB REMARK 900 APO-STRUCTURE REMARK 900 RELATED ID: 3QS8 RELATED DB: PDB REMARK 900 IN COMPLEX WITH INHIBITOR ACS174 REMARK 900 RELATED ID: 3R6C RELATED DB: PDB REMARK 900 IN COMPLEX WITH INHIBITOR ACS179 REMARK 900 RELATED ID: 3QSA RELATED DB: PDB REMARK 900 IN COMPLEX WITH INHIBITOR TAMU-A7 REMARK 900 RELATED ID: 2BPQ RELATED DB: PDB DBREF 3R88 A 2 370 UNP P66992 TRPD_MYCTU 2 370 DBREF 3R88 B 2 370 UNP P66992 TRPD_MYCTU 2 370 SEQADV 3R88 LEU A 371 UNP P66992 EXPRESSION TAG SEQADV 3R88 GLU A 372 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS A 373 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS A 374 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS A 375 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS A 376 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS A 377 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS A 378 UNP P66992 EXPRESSION TAG SEQADV 3R88 LEU B 371 UNP P66992 EXPRESSION TAG SEQADV 3R88 GLU B 372 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS B 373 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS B 374 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS B 375 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS B 376 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS B 377 UNP P66992 EXPRESSION TAG SEQADV 3R88 HIS B 378 UNP P66992 EXPRESSION TAG SEQRES 1 A 377 ALA LEU SER ALA GLU GLY SER SER GLY GLY SER ARG GLY SEQRES 2 A 377 GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SER TRP SEQRES 3 A 377 PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG ASP LEU SEQRES 4 A 377 ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN ILE MET SEQRES 5 A 377 THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA PHE ALA SEQRES 6 A 377 VAL ALA MET THR MET LYS ALA PRO THR ALA ASP GLU VAL SEQRES 7 A 377 GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA HIS PRO SEQRES 8 A 377 LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL ASP VAL SEQRES 9 A 377 VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL ASN LEU SEQRES 10 A 377 SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA GLY VAL SEQRES 11 A 377 PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SER LEU SEQRES 12 A 377 SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY VAL ARG SEQRES 13 A 377 ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER LEU ALA SEQRES 14 A 377 GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG PHE HIS SEQRES 15 A 377 PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG GLU ILE SEQRES 16 A 377 GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO LEU THR SEQRES 17 A 377 ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY CYS ALA SEQRES 18 A 377 PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL PHE ALA SEQRES 19 A 377 ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY ASP ASP SEQRES 20 A 377 GLY LEU ASP GLU LEU THR THR THR THR THR SER THR ILE SEQRES 21 A 377 TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU THR PHE SEQRES 22 A 377 ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN LEU ASP SEQRES 23 A 377 GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA ALA ALA SEQRES 24 A 377 VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO VAL ARG SEQRES 25 A 377 ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE VAL ALA SEQRES 26 A 377 HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU PRO ALA SEQRES 27 A 377 TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA ILE ASP SEQRES 28 A 377 THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP VAL ARG SEQRES 29 A 377 PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 377 ALA LEU SER ALA GLU GLY SER SER GLY GLY SER ARG GLY SEQRES 2 B 377 GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SER TRP SEQRES 3 B 377 PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG ASP LEU SEQRES 4 B 377 ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN ILE MET SEQRES 5 B 377 THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA PHE ALA SEQRES 6 B 377 VAL ALA MET THR MET LYS ALA PRO THR ALA ASP GLU VAL SEQRES 7 B 377 GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA HIS PRO SEQRES 8 B 377 LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL ASP VAL SEQRES 9 B 377 VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL ASN LEU SEQRES 10 B 377 SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA GLY VAL SEQRES 11 B 377 PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SER LEU SEQRES 12 B 377 SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY VAL ARG SEQRES 13 B 377 ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER LEU ALA SEQRES 14 B 377 GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG PHE HIS SEQRES 15 B 377 PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG GLU ILE SEQRES 16 B 377 GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO LEU THR SEQRES 17 B 377 ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY CYS ALA SEQRES 18 B 377 PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL PHE ALA SEQRES 19 B 377 ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY ASP ASP SEQRES 20 B 377 GLY LEU ASP GLU LEU THR THR THR THR THR SER THR ILE SEQRES 21 B 377 TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU THR PHE SEQRES 22 B 377 ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN LEU ASP SEQRES 23 B 377 GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA ALA ALA SEQRES 24 B 377 VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO VAL ARG SEQRES 25 B 377 ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE VAL ALA SEQRES 26 B 377 HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU PRO ALA SEQRES 27 B 377 TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA ILE ASP SEQRES 28 B 377 THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP VAL ARG SEQRES 29 B 377 PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS HIS HIS HET PRP A 401 22 HET MG A 402 1 HET MG A 403 1 HET GOL A 404 6 HET PRP B 401 22 HET MG B 402 1 HET MG B 403 1 HET 14F B 404 14 HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM 14F 2-AMINO-4,5-DIMETHOXYBENZOIC ACID HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PRP 2(C5 H13 O14 P3) FORMUL 4 MG 4(MG 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 10 14F C9 H11 N O4 FORMUL 11 HOH *689(H2 O) HELIX 1 1 SER A 26 ASP A 36 1 11 HELIX 2 2 GLY A 43 THR A 54 1 12 HELIX 3 3 ARG A 58 ALA A 73 1 16 HELIX 4 4 THR A 75 ALA A 90 1 16 HELIX 5 5 ASN A 117 ALA A 129 1 13 HELIX 6 6 GLY A 146 LEU A 154 1 9 HELIX 7 7 GLY A 161 GLY A 173 1 13 HELIX 8 8 ALA A 179 HIS A 183 1 5 HELIX 9 9 TYR A 186 GLY A 197 1 12 HELIX 10 10 THR A 200 ASN A 203 5 4 HELIX 11 11 LEU A 204 THR A 209 1 6 HELIX 12 12 LEU A 226 ARG A 237 1 12 HELIX 13 13 ASP A 275 GLY A 280 5 6 HELIX 14 14 GLN A 285 ALA A 290 5 6 HELIX 15 15 ASP A 293 GLY A 306 1 14 HELIX 16 16 GLY A 310 GLY A 329 1 20 HELIX 17 17 GLU A 335 THR A 353 1 19 HELIX 18 18 GLY A 354 GLN A 369 1 16 HELIX 19 19 SER B 26 ASP B 36 1 11 HELIX 20 20 GLY B 43 THR B 54 1 12 HELIX 21 21 ARG B 58 ALA B 73 1 16 HELIX 22 22 THR B 75 ALA B 90 1 16 HELIX 23 23 ASN B 117 ALA B 129 1 13 HELIX 24 24 GLY B 146 LEU B 154 1 9 HELIX 25 25 GLY B 161 VAL B 172 1 12 HELIX 26 26 ALA B 179 HIS B 183 1 5 HELIX 27 27 TYR B 186 GLY B 197 1 12 HELIX 28 28 THR B 200 ASN B 203 5 4 HELIX 29 29 LEU B 204 THR B 209 1 6 HELIX 30 30 LEU B 226 ARG B 237 1 12 HELIX 31 31 ASP B 275 GLY B 280 5 6 HELIX 32 32 GLN B 285 ALA B 290 5 6 HELIX 33 33 ASP B 293 GLY B 306 1 14 HELIX 34 34 GLY B 310 GLY B 329 1 20 HELIX 35 35 GLU B 335 THR B 353 1 19 HELIX 36 36 GLY B 354 GLN B 369 1 16 SHEET 1 A 5 VAL A 103 GLY A 107 0 SHEET 2 A 5 ALA A 216 GLY A 220 1 O LEU A 218 N ASP A 104 SHEET 3 A 5 SER A 240 GLY A 246 1 O VAL A 244 N ILE A 219 SHEET 4 A 5 SER A 259 ALA A 265 -1 O THR A 260 N HIS A 245 SHEET 5 A 5 SER A 268 PHE A 274 -1 O ASP A 270 N ARG A 263 SHEET 1 B 2 VAL A 133 GLY A 137 0 SHEET 2 B 2 ILE A 174 PHE A 178 1 O CYS A 177 N LYS A 135 SHEET 1 C 5 VAL B 103 GLY B 107 0 SHEET 2 C 5 ALA B 216 GLY B 220 1 O LEU B 218 N ASP B 104 SHEET 3 C 5 SER B 240 GLY B 246 1 O LEU B 242 N ILE B 219 SHEET 4 C 5 SER B 259 ALA B 265 -1 O VAL B 264 N VAL B 241 SHEET 5 C 5 SER B 268 PHE B 274 -1 O LEU B 272 N ILE B 261 SHEET 1 D 2 VAL B 133 GLY B 137 0 SHEET 2 D 2 ILE B 174 PHE B 178 1 O CYS B 177 N LYS B 135 LINK OG SER A 119 MG MG A 402 1555 1555 2.08 LINK OD1 ASP A 251 MG MG A 403 1555 1555 2.32 LINK OE2 GLU A 252 MG MG A 402 1555 1555 2.00 LINK OE2 GLU A 252 MG MG A 403 1555 1555 2.34 LINK O1A PRP A 401 MG MG A 402 1555 1555 2.01 LINK O3B PRP A 401 MG MG A 402 1555 1555 2.09 LINK MG MG A 402 O HOH A 770 1555 1555 2.08 LINK MG MG A 402 O HOH A 773 1555 1555 2.16 LINK MG MG A 403 O HOH A 620 1555 1555 1.99 LINK MG MG A 403 O HOH A 771 1555 1555 1.99 LINK MG MG A 403 O HOH A 772 1555 1555 2.32 LINK MG MG A 403 O HOH A 773 1555 1555 2.29 LINK OG SER B 119 MG MG B 403 1555 1555 2.10 LINK OD1 ASP B 251 MG MG B 402 1555 1555 2.48 LINK OE2 GLU B 252 MG MG B 402 1555 1555 2.34 LINK OE2 GLU B 252 MG MG B 403 1555 1555 2.12 LINK O3B PRP B 401 MG MG B 403 1555 1555 1.97 LINK O1A PRP B 401 MG MG B 403 1555 1555 2.06 LINK MG MG B 402 O HOH B 539 1555 1555 2.42 LINK MG MG B 402 O HOH B 619 1555 1555 2.97 LINK MG MG B 402 O HOH B 767 1555 1555 2.22 LINK MG MG B 403 O HOH B 503 1555 1555 2.09 LINK MG MG B 403 O HOH B 539 1555 1555 2.18 CRYST1 94.312 78.849 100.494 90.00 110.27 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010603 0.000000 0.003916 0.00000 SCALE2 0.000000 0.012682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010608 0.00000