PDB Short entry for 3RB0 HEADER TRANSFERASE/DNA 28-MAR-11 3RB0 TITLE DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER G BASE OPPOSITE TITLE 2 THE 1-METHYLGUANINE (M1G) LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3'); COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*C*CP*TP*AP*AP*CP*(MG1) COMPND 14 P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'); COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA M1G-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC KEYWDS MUTAGENESIS, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, DNA-BINDING, KEYWDS 2 DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, METAL-BINDING, MUTATOR KEYWDS 3 PROTEIN, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA KEYWDS 4 COMPLEX, LESION BYPASS, DNA POLYMERASE, Y-FAMILY POLYMERASE, DNTP KEYWDS 5 BINDING, 1-METHYLGUANINE EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,D.J.PATEL REVDAT 3 13-SEP-23 3RB0 1 REMARK SEQADV LINK REVDAT 2 19-JUN-13 3RB0 1 JRNL VERSN REVDAT 1 15-JUN-11 3RB0 0 JRNL AUTH O.RECHKOBLIT,J.C.DELANEY,J.M.ESSIGMANN,D.J.PATEL JRNL TITL IMPLICATIONS FOR DAMAGE RECOGNITION DURING DPO4-MEDIATED JRNL TITL 2 MUTAGENIC BYPASS OF M1G AND M3C LESIONS. JRNL REF STRUCTURE V. 19 821 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21645853 JRNL DOI 10.1016/J.STR.2011.03.020 REMARK 2 REMARK 2 RESOLUTION. 3.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 16783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 948 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5479 REMARK 3 NUCLEIC ACID ATOMS : 1181 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.08000 REMARK 3 B22 (A**2) : -1.79000 REMARK 3 B33 (A**2) : 5.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.621 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.551 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 65.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6958 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4568 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9605 ; 1.441 ; 2.217 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11179 ; 0.840 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 6.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;35.906 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1120 ;19.291 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;14.535 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1094 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6637 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1224 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3406 ; 0.363 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1376 ; 0.032 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5516 ; 0.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3552 ; 1.184 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4089 ; 2.366 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8928 1.4134 2.8190 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.1461 REMARK 3 T33: 0.1782 T12: 0.0096 REMARK 3 T13: -0.0010 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.9560 L22: 2.7354 REMARK 3 L33: 1.2694 L12: -1.1789 REMARK 3 L13: 0.0853 L23: 0.4476 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.3117 S13: 0.0623 REMARK 3 S21: 0.1919 S22: 0.0688 S23: 0.0284 REMARK 3 S31: 0.0475 S32: 0.1656 S33: -0.0469 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6741 56.9500 39.5644 REMARK 3 T TENSOR REMARK 3 T11: 0.7061 T22: 0.7501 REMARK 3 T33: 0.4695 T12: -0.1348 REMARK 3 T13: -0.0565 T23: 0.0717 REMARK 3 L TENSOR REMARK 3 L11: 3.7689 L22: 1.8638 REMARK 3 L33: 4.2762 L12: 0.1891 REMARK 3 L13: -0.4400 L23: -1.5022 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: -0.5913 S13: -0.4152 REMARK 3 S21: 0.4811 S22: -0.2735 S23: -0.1352 REMARK 3 S31: -0.3223 S32: -0.0319 S33: 0.2113 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 805 D 814 REMARK 3 RESIDUE RANGE : E 905 E 915 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4602 -4.9277 11.6491 REMARK 3 T TENSOR REMARK 3 T11: 0.2814 T22: 0.7571 REMARK 3 T33: 0.3659 T12: -0.0283 REMARK 3 T13: -0.0757 T23: 0.1678 REMARK 3 L TENSOR REMARK 3 L11: 1.3348 L22: 6.0310 REMARK 3 L33: 6.8383 L12: -2.8307 REMARK 3 L13: -0.9729 L23: -0.2718 REMARK 3 S TENSOR REMARK 3 S11: -0.3463 S12: -0.7213 S13: -0.1361 REMARK 3 S21: 0.9165 S22: 0.2894 S23: 0.1579 REMARK 3 S31: -0.1547 S32: 0.7424 S33: 0.0569 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1806 H 1814 REMARK 3 RESIDUE RANGE : J 1905 J 1914 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6669 47.4509 43.9495 REMARK 3 T TENSOR REMARK 3 T11: 0.7727 T22: 1.1420 REMARK 3 T33: 0.9997 T12: -0.1158 REMARK 3 T13: -0.0248 T23: 0.2978 REMARK 3 L TENSOR REMARK 3 L11: 5.9227 L22: 6.6168 REMARK 3 L33: 5.6532 L12: -0.6778 REMARK 3 L13: -3.3598 L23: 0.1912 REMARK 3 S TENSOR REMARK 3 S11: -0.1262 S12: -0.7522 S13: -1.1872 REMARK 3 S21: 0.8041 S22: -0.5157 S23: -0.4889 REMARK 3 S31: 0.6190 S32: 0.2225 S33: 0.6419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17707 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3RAQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 100 MM CALCIUM REMARK 280 ACETATE AND 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.18100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 900 REMARK 465 DG H 1802 REMARK 465 DC J 1900 REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 465 DC J 1918 REMARK 465 DC J 1919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DDG D 814 C3' REMARK 470 DC E 901 P OP1 OP2 REMARK 470 DT H1803 P OP1 OP2 REMARK 470 DDG H1814 C5' C4' O4' C3' C2' C1' N9 REMARK 470 DDG H1814 C8 N7 C5 C6 O6 N1 C2 REMARK 470 DDG H1814 N2 N3 C4 REMARK 470 DA J1903 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 68 OH TYR A 73 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 802 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 DG D 802 C4' - C3' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 DG D 802 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT D 803 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT D 804 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DT D 804 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG D 805 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG D 806 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DG D 806 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT D 808 N3 - C4 - O4 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT D 808 C5 - C4 - O4 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG D 809 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT D 811 O4' - C1' - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG D 813 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT E 902 C4 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC E 905 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC E 907 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DC E 907 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT E 908 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC E 910 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC E 914 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA E 917 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DA E 917 O4' - C1' - C2' ANGL. DEV. = -7.1 DEGREES REMARK 500 DA E 917 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DG H1805 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG H1806 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA H1807 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG H1810 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG H1813 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA J1903 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA J1904 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC J1907 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC J1910 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC J1911 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA J1912 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA J1912 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DA J1916 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA J1917 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 55.70 22.98 REMARK 500 PHE A 11 -71.01 -40.31 REMARK 500 ASN A 20 69.84 -152.55 REMARK 500 LYS A 66 -72.58 -60.87 REMARK 500 LYS A 98 90.14 -62.02 REMARK 500 LYS A 164 119.48 -163.58 REMARK 500 ASP A 167 -167.66 -72.00 REMARK 500 GLU A 169 -50.65 -28.12 REMARK 500 GLU A 170 -70.30 -71.15 REMARK 500 GLU A 177 -58.51 -147.77 REMARK 500 MET A 216 -39.40 -141.52 REMARK 500 ASP A 277 97.09 67.29 REMARK 500 LYS A 278 -41.04 76.76 REMARK 500 LEU A 293 20.42 80.93 REMARK 500 LYS A 339 72.38 48.00 REMARK 500 TYR B1010 63.68 17.01 REMARK 500 ASN B1020 91.34 -170.88 REMARK 500 ASP B1039 32.50 70.03 REMARK 500 ASN B1047 150.34 -46.44 REMARK 500 LYS B1052 -38.24 -38.85 REMARK 500 ALA B1071 137.03 -172.34 REMARK 500 TYR B1073 57.06 -141.81 REMARK 500 ARG B1077 76.40 -110.81 REMARK 500 ILE B1099 114.76 -161.03 REMARK 500 SER B1103 -166.04 -170.25 REMARK 500 ASP B1105 20.81 -141.19 REMARK 500 LEU B1109 -141.11 -126.79 REMARK 500 ILE B1111 59.29 -119.87 REMARK 500 VAL B1115 131.61 -35.27 REMARK 500 LEU B1133 -8.20 -56.48 REMARK 500 LEU B1178 117.13 -167.98 REMARK 500 ASN B1188 -46.32 -130.92 REMARK 500 THR B1205 61.10 -67.99 REMARK 500 LEU B1206 -48.11 -161.36 REMARK 500 SER B1207 45.43 -76.34 REMARK 500 PHE B1210 -71.95 52.17 REMARK 500 LYS B1214 -50.90 -26.60 REMARK 500 MET B1216 -48.33 -169.21 REMARK 500 LYS B1223 -70.41 -68.45 REMARK 500 TYR B1224 -63.47 -19.32 REMARK 500 ASP B1231 -63.00 75.13 REMARK 500 TYR B1233 112.33 177.18 REMARK 500 LEU B1258 -70.84 -61.12 REMARK 500 PRO B1263 -37.63 -37.66 REMARK 500 ASP B1277 107.24 47.46 REMARK 500 LYS B1278 -58.10 82.26 REMARK 500 ASP B1292 22.86 -78.52 REMARK 500 ARG B1331 -55.04 -137.45 REMARK 500 LYS B1339 106.56 52.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 105 OD1 97.5 REMARK 620 3 GLU A 106 OE2 72.0 80.6 REMARK 620 4 DGT A 414 O2A 86.2 92.4 155.8 REMARK 620 5 HOH A 519 O 54.7 152.2 89.7 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 72.8 REMARK 620 3 ASP A 105 OD2 55.4 77.3 REMARK 620 4 DGT A 414 O2A 90.0 142.7 65.8 REMARK 620 5 DGT A 414 O1B 131.6 94.8 76.4 72.0 REMARK 620 6 DGT A 414 O2G 130.4 92.9 166.7 122.5 95.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 84.6 REMARK 620 3 HOH A 516 O 56.6 81.4 REMARK 620 4 HOH D 511 O 115.5 99.5 60.5 REMARK 620 5 DG D 813 OP1 139.3 92.4 162.6 105.0 REMARK 620 6 DDG D 814 O6 73.9 144.8 63.5 67.0 122.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD2 REMARK 620 2 ASP B1105 OD1 77.8 REMARK 620 3 GLU B1106 OE2 118.3 75.1 REMARK 620 4 DGT B1414 O2A 96.0 117.1 145.6 REMARK 620 5 HOH B1502 O 71.3 140.7 98.7 90.2 REMARK 620 6 HOH H1501 O 129.6 136.2 62.0 95.6 59.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD2 REMARK 620 2 ASP B1007 OD1 41.8 REMARK 620 3 PHE B1008 O 86.4 86.2 REMARK 620 4 ASP B1105 OD2 63.8 105.5 85.4 REMARK 620 5 DGT B1414 O1B 153.6 160.1 103.9 92.5 REMARK 620 6 DGT B1414 O2A 97.2 96.2 176.3 96.5 72.9 REMARK 620 7 DGT B1414 O2G 110.1 70.6 71.1 156.3 96.3 107.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B1186 O REMARK 620 2 HOH B1514 O 83.9 REMARK 620 3 HOH H1515 O 123.5 141.2 REMARK 620 4 DG H1813 OP2 78.3 84.5 76.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RAX RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER T BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION REMARK 900 RELATED ID: 3RAQ RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER C BASE REMARK 900 OPPOSITE THE 1-METHYLGUANINE (M1G) LESION DBREF 3RB0 A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RB0 B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3RB0 D 802 814 PDB 3RB0 3RB0 802 814 DBREF 3RB0 H 1802 1814 PDB 3RB0 3RB0 1802 1814 DBREF 3RB0 E 900 919 PDB 3RB0 3RB0 900 919 DBREF 3RB0 J 1900 1919 PDB 3RB0 3RB0 1900 1919 SEQADV 3RB0 GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3RB0 GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 D 13 DG DT DT DG DG DA DT DG DG DT DA DG DDG SEQRES 1 E 20 DC DC DT DA DA DC MG1 DC DT DA DC DC DA SEQRES 2 E 20 DT DC DC DA DA DC DC SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 H 13 DG DT DT DG DG DA DT DG DG DT DA DG DDG SEQRES 1 J 20 DC DC DT DA DA DC MG1 DC DT DA DC DC DA SEQRES 2 J 20 DT DC DC DA DA DC DC MODRES 3RB0 DDG D 814 DG MODRES 3RB0 MG1 E 906 DG MODRES 3RB0 DDG H 1814 DG MODRES 3RB0 MG1 J 1906 DG HET DDG D 814 20 HET MG1 E 906 23 HET DDG H1814 4 HET MG1 J1906 23 HET DGT A 414 31 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET DGT B1414 31 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM MG1 2'-DEOXY-1-METHYLGUANOSINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 2 DDG 2(C10 H14 N5 O6 P) FORMUL 3 MG1 2(C11 H16 N5 O7 P) FORMUL 7 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 CA 6(CA 2+) FORMUL 15 HOH *31(H2 O) HELIX 1 1 TYR A 10 LEU A 19 1 10 HELIX 2 2 ASN A 20 LYS A 24 5 5 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 ARG A 93 1 17 HELIX 6 6 ASP A 117 LYS A 137 1 21 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 ARG A 176 1 10 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 ASN A 188 LEU A 197 1 10 HELIX 11 11 LYS A 201 SER A 207 5 7 HELIX 12 12 GLU A 209 GLY A 218 1 10 HELIX 13 13 GLY A 218 ASP A 231 1 14 HELIX 14 14 ASN A 257 ASP A 277 1 21 HELIX 15 15 SER A 307 ASP A 326 1 20 HELIX 16 16 TYR B 1010 LEU B 1019 1 10 HELIX 17 17 ASN B 1020 LYS B 1024 5 5 HELIX 18 18 ASN B 1047 LYS B 1052 1 6 HELIX 19 19 PRO B 1060 LEU B 1068 1 9 HELIX 20 20 ARG B 1077 LEU B 1091 1 15 HELIX 21 21 ARG B 1119 GLU B 1136 1 18 HELIX 22 22 ASN B 1147 LYS B 1159 1 13 HELIX 23 23 ASP B 1167 ILE B 1175 1 9 HELIX 24 24 ASN B 1188 LYS B 1196 1 9 HELIX 25 25 PHE B 1210 ARG B 1230 1 21 HELIX 26 26 ASN B 1257 ASP B 1277 1 21 HELIX 27 27 SER B 1307 LEU B 1319 1 13 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O SER A 145 N VAL A 3 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 VAL A 43 ALA A 46 0 SHEET 2 B 3 VAL A 28 CYS A 31 -1 N VAL A 30 O ALA A 44 SHEET 3 B 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O ILE A 333 N VAL A 249 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 287 O GLY A 334 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 4 GLU B1100 ILE B1101 0 SHEET 2 D 4 GLU B1106 TYR B1108 -1 O TYR B1108 N GLU B1100 SHEET 3 D 4 VAL B1003 PHE B1008 -1 N VAL B1006 O ALA B1107 SHEET 4 D 4 VAL B1140 SER B1145 -1 O SER B1145 N VAL B1003 SHEET 1 E 2 VAL B1029 PHE B1033 0 SHEET 2 E 2 GLY B1041 ALA B1046 -1 O ALA B1044 N VAL B1030 SHEET 1 F 4 SER B1244 THR B1250 0 SHEET 2 F 4 ARG B1332 PHE B1340 -1 O PHE B1337 N ILE B1245 SHEET 3 F 4 PRO B1281 VAL B1289 -1 N LYS B1282 O LYS B1339 SHEET 4 F 4 ILE B1295 THR B1301 -1 O ARG B1300 N ILE B1284 LINK O3' DG D 813 P DDG D 814 1555 1555 1.61 LINK O3' DC E 905 P MG1 E 906 1555 1555 1.60 LINK O3' MG1 E 906 P DC E 907 1555 1555 1.59 LINK O3' DG H1813 P DDG H1814 1555 1555 1.62 LINK O3' DC J1905 P MG1 J1906 1555 1555 1.60 LINK O3' MG1 J1906 P DC J1907 1555 1555 1.60 LINK OD2 ASP A 7 CA CA A 415 1555 1555 2.34 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.30 LINK O PHE A 8 CA CA A 416 1555 1555 2.32 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.34 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.53 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.32 LINK O ALA A 181 CA CA A 417 1555 1555 2.65 LINK O ILE A 186 CA CA A 417 1555 1555 2.44 LINK O2A DGT A 414 CA CA A 415 1555 1555 2.33 LINK O2A DGT A 414 CA CA A 416 1555 1555 2.31 LINK O1B DGT A 414 CA CA A 416 1555 1555 2.77 LINK O2G DGT A 414 CA CA A 416 1555 1555 3.10 LINK CA CA A 415 O HOH A 519 1555 1555 2.95 LINK CA CA A 417 O HOH A 516 1555 1555 2.35 LINK CA CA A 417 O HOH D 511 1555 1555 3.13 LINK CA CA A 417 OP1 DG D 813 1555 1555 3.17 LINK CA CA A 417 O6 DDG D 814 1555 1555 2.75 LINK OD2 ASP B1007 CA CA B1415 1555 1555 3.01 LINK OD2 ASP B1007 CA CA B1416 1555 1555 2.93 LINK OD1 ASP B1007 CA CA B1416 1555 1555 3.18 LINK O PHE B1008 CA CA B1416 1555 1555 2.34 LINK OD1 ASP B1105 CA CA B1415 1555 1555 3.13 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.70 LINK OE2 GLU B1106 CA CA B1415 1555 1555 2.88 LINK O ILE B1186 CA CA B1417 1555 1555 2.32 LINK O2A DGT B1414 CA CA B1415 1555 1555 2.32 LINK O1B DGT B1414 CA CA B1416 1555 1555 2.32 LINK O2A DGT B1414 CA CA B1416 1555 1555 2.36 LINK O2G DGT B1414 CA CA B1416 1555 1555 2.69 LINK CA CA B1415 O HOH B1502 1555 1555 3.11 LINK CA CA B1415 O HOH H1501 1555 1555 2.60 LINK CA CA B1417 O HOH B1514 1555 1555 2.58 LINK CA CA B1417 O HOH H1515 1555 1555 2.90 LINK CA CA B1417 OP2 DG H1813 1555 1555 2.89 CISPEP 1 LYS A 159 PRO A 160 0 5.54 CISPEP 2 LYS B 1159 PRO B 1160 0 -4.39 SITE 1 AC1 15 ASP A 7 TYR A 10 PHE A 11 TYR A 12 SITE 2 AC1 15 ALA A 44 THR A 45 TYR A 48 ARG A 51 SITE 3 AC1 15 ASP A 105 LYS A 159 CA A 415 CA A 416 SITE 4 AC1 15 DDG D 814 DC E 905 MG1 E 906 SITE 1 AC2 5 ASP A 7 ASP A 105 GLU A 106 DGT A 414 SITE 2 AC2 5 HOH A 519 SITE 1 AC3 5 ASP A 7 PHE A 8 ASP A 105 LYS A 159 SITE 2 AC3 5 DGT A 414 SITE 1 AC4 5 ALA A 181 ILE A 186 HOH A 516 DG D 813 SITE 2 AC4 5 DDG D 814 SITE 1 AC5 18 HOH B 5 ASP B1007 PHE B1008 ASP B1009 SITE 2 AC5 18 TYR B1010 PHE B1011 TYR B1012 ALA B1044 SITE 3 AC5 18 THR B1045 TYR B1048 ARG B1051 ASP B1105 SITE 4 AC5 18 LYS B1159 CA B1415 CA B1416 DDG H1814 SITE 5 AC5 18 DC J1905 MG1 J1906 SITE 1 AC6 6 ASP B1007 ASP B1105 GLU B1106 DGT B1414 SITE 2 AC6 6 CA B1416 HOH H1501 SITE 1 AC7 5 ASP B1007 PHE B1008 ASP B1105 DGT B1414 SITE 2 AC7 5 CA B1415 SITE 1 AC8 6 ALA B1181 VAL B1183 ILE B1186 HOH B1514 SITE 2 AC8 6 HOH H1515 DG H1813 CRYST1 52.421 110.362 102.268 90.00 101.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019076 0.000000 0.003805 0.00000 SCALE2 0.000000 0.009061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009971 0.00000