PDB Short entry for 3RCK HEADER ISOMERASE/ISOMERASE INHIBITOR 31-MAR-11 3RCK TITLE HUMAN CYCLOPHILIN D COMPLEXED WITH A FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UNP RESIDUES 43-207; COMPND 5 SYNONYM: PPIASE F, CYCLOPHILIN F, ROTAMASE F; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIF, CYP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA BARREL, PROLYL CIS/TRANS ISOMERASE, MITOCHONDRIA, INHIBITOR, KEYWDS 2 ISOMERASE-ISOMERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.COLLIANDRE,H.AHMED-BELKACEM,Y.BESSIN,J.M.PAWLOTSKY,J.F.GUICHOU REVDAT 3 13-SEP-23 3RCK 1 REMARK SEQADV REVDAT 2 19-OCT-16 3RCK 1 JRNL REVDAT 1 21-MAR-12 3RCK 0 JRNL AUTH A.AHMED-BELKACEM,L.COLLIANDRE,N.AHNOU,Q.NEVERS,M.GELIN, JRNL AUTH 2 Y.BESSIN,R.BRILLET,O.CALA,D.DOUGUET,W.BOURGUET,I.KRIMM, JRNL AUTH 3 J.M.PAWLOTSKY,J.F.GUICHOU JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW FAMILY OF NON-PEPTIDIC JRNL TITL 2 SMALL-MOLECULE CYCLOPHILIN INHIBITORS WITH POTENT ANTIVIRAL JRNL TITL 3 ACTIVITIES. JRNL REF NAT COMMUN V. 7 12777 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27652979 JRNL DOI 10.1038/NCOMMS12777 REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0062 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 36483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1927 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1888 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.4610 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.4760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.729 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1361 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 986 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1826 ; 1.234 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2336 ; 0.811 ; 3.014 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 6.243 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;31.359 ;23.962 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 233 ;11.079 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;15.491 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 194 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1494 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 266 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 822 ; 0.538 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 347 ; 0.154 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1330 ; 0.943 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 539 ; 1.287 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 493 ; 1.973 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DNA REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36483 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 36.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 12.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 2BIT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, PH 7.3, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.69850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.66400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.66400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.84925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.66400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.66400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.54775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.66400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.66400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.84925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.66400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.66400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.54775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.69850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 42 REMARK 465 SER X 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS X 167 NZ REMARK 470 LYS X 190 CD CE NZ REMARK 470 ARG X 193 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE X 102 -75.13 -147.37 REMARK 500 THR X 161 65.84 -112.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FP X 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FP X 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FP X 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FP X 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FP X 212 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R49 RELATED DB: PDB REMARK 900 RELATED ID: 3R4G RELATED DB: PDB REMARK 900 RELATED ID: 3R54 RELATED DB: PDB REMARK 900 RELATED ID: 3R56 RELATED DB: PDB REMARK 900 RELATED ID: 3R57 RELATED DB: PDB REMARK 900 RELATED ID: 3R59 RELATED DB: PDB REMARK 900 RELATED ID: 3RCF RELATED DB: PDB REMARK 900 RELATED ID: 3RCG RELATED DB: PDB REMARK 900 RELATED ID: 3RCI RELATED DB: PDB REMARK 900 RELATED ID: 3RCL RELATED DB: PDB REMARK 900 RELATED ID: 3RD9 RELATED DB: PDB REMARK 900 RELATED ID: 3RDA RELATED DB: PDB REMARK 900 RELATED ID: 3RDB RELATED DB: PDB REMARK 900 RELATED ID: 3RDC RELATED DB: PDB REMARK 900 RELATED ID: 3RDD RELATED DB: PDB DBREF 3RCK X 43 207 UNP P30405 PPIF_HUMAN 43 207 SEQADV 3RCK MET X 42 UNP P30405 INITIATING METHIONINE SEQADV 3RCK ILE X 175 UNP P30405 LYS 175 ENGINEERED MUTATION SEQRES 1 X 166 MET SER GLY ASN PRO LEU VAL TYR LEU ASP VAL ASP ALA SEQRES 2 X 166 ASN GLY LYS PRO LEU GLY ARG VAL VAL LEU GLU LEU LYS SEQRES 3 X 166 ALA ASP VAL VAL PRO LYS THR ALA GLU ASN PHE ARG ALA SEQRES 4 X 166 LEU CYS THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER SEQRES 5 X 166 THR PHE HIS ARG VAL ILE PRO SER PHE MET CYS GLN ALA SEQRES 6 X 166 GLY ASP PHE THR ASN HIS ASN GLY THR GLY GLY LYS SER SEQRES 7 X 166 ILE TYR GLY SER ARG PHE PRO ASP GLU ASN PHE THR LEU SEQRES 8 X 166 LYS HIS VAL GLY PRO GLY VAL LEU SER MET ALA ASN ALA SEQRES 9 X 166 GLY PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR SEQRES 10 X 166 ILE LYS THR ASP TRP LEU ASP GLY LYS HIS VAL VAL PHE SEQRES 11 X 166 GLY HIS VAL ILE GLU GLY MET ASP VAL VAL LYS LYS ILE SEQRES 12 X 166 GLU SER PHE GLY SER LYS SER GLY ARG THR SER LYS LYS SEQRES 13 X 166 ILE VAL ILE THR ASP CYS GLY GLN LEU SER HET 1FP X 208 8 HET 1FP X 209 8 HET 1FP X 210 12 HET 1FP X 211 16 HET 1FP X 212 8 HETNAM 1FP PIPERAZINE-1-CARBALDEHYDE FORMUL 2 1FP 5(C5 H10 N2 O) FORMUL 7 HOH *234(H2 O) HELIX 1 1 VAL X 71 GLY X 84 1 14 HELIX 2 2 THR X 161 ASP X 165 5 5 HELIX 3 3 GLY X 177 PHE X 187 1 11 SHEET 1 A 8 PHE X 95 ILE X 99 0 SHEET 2 A 8 MET X 103 ALA X 106 -1 O GLN X 105 N ARG X 97 SHEET 3 A 8 PHE X 154 CYS X 157 -1 O PHE X 154 N ALA X 106 SHEET 4 A 8 VAL X 139 MET X 142 -1 N SER X 141 O PHE X 155 SHEET 5 A 8 VAL X 170 GLU X 176 -1 O PHE X 171 N LEU X 140 SHEET 6 A 8 LYS X 57 LEU X 66 -1 N VAL X 63 O GLU X 176 SHEET 7 A 8 LEU X 47 ALA X 54 -1 N VAL X 52 O LEU X 59 SHEET 8 A 8 ILE X 198 GLN X 205 -1 O ASP X 202 N ASP X 51 SITE 1 AC1 10 GLY X 114 THR X 115 ASN X 144 THR X 149 SITE 2 AC1 10 GLN X 153 1FP X 209 HOH X 239 HOH X 240 SITE 3 AC1 10 HOH X 284 HOH X 297 SITE 1 AC2 11 HIS X 96 ARG X 97 GLN X 105 GLY X 114 SITE 2 AC2 11 ASN X 144 GLN X 153 1FP X 208 1FP X 210 SITE 3 AC2 11 HOH X 281 HOH X 298 HOH X 377 SITE 1 AC3 10 PHE X 102 MET X 103 GLN X 105 ALA X 143 SITE 2 AC3 10 ASN X 144 LEU X 164 HIS X 168 1FP X 209 SITE 3 AC3 10 HOH X 315 HOH X 403 SITE 1 AC4 7 GLY X 56 ILE X 99 SER X 101 PHE X 102 SITE 2 AC4 7 ILE X 159 LYS X 197 HOH X 345 SITE 1 AC5 10 ASN X 45 LYS X 67 ASP X 69 ASN X 111 SITE 2 AC5 10 THR X 115 HOH X 243 HOH X 244 HOH X 245 SITE 3 AC5 10 HOH X 246 HOH X 354 CRYST1 57.328 57.328 87.397 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011442 0.00000