PDB Short entry for 3RFY HEADER ISOMERASE 07-APR-11 3RFY TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA CYCLOPHILIN 38 (ATCYP38) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP38, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE CYP38, ROTAMASE CYP38, THYLAKOID LUMEN PPIASE; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G01480, CYP38, F4P13.3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KG KEYWDS CYCLOPHILIN, CYP38, PEPTIDYL PROLYL ISOMERASE, PPIASE, TLP, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.VASUDEVAN,K.SWAMINATHAN REVDAT 5 20-MAR-24 3RFY 1 SEQADV REVDAT 4 08-NOV-17 3RFY 1 REMARK REVDAT 3 16-OCT-13 3RFY 1 JRNL REVDAT 2 27-JUN-12 3RFY 1 JRNL REVDAT 1 13-JUN-12 3RFY 0 JRNL AUTH D.VASUDEVAN,A.FU,S.LUAN,K.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF ARABIDOPSIS CYCLOPHILIN38 REVEALS A JRNL TITL 2 PREVIOUSLY UNCHARACTERIZED IMMUNOPHILIN FOLD AND A POSSIBLE JRNL TITL 3 AUTOINHIBITORY MECHANISM. JRNL REF PLANT CELL V. 24 2666 2012 JRNL REFN ISSN 1040-4651 JRNL PMID 22706283 JRNL DOI 10.1105/TPC.111.093781 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3188772.680 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 16411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 669 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1642 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 90 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.033 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2765 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.49000 REMARK 3 B22 (A**2) : -3.78000 REMARK 3 B33 (A**2) : -2.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 2.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.170 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.160 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.050 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.240 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 67.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797, 0.9794, 0.9500 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 SI(111) REMARK 200 OPTICS : VERTICALLY COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19441 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 2.5% T-BUTANOL, 100MM REMARK 280 SODIUM CITRATE (PH 5.5), VAPOR BATCH, TEMPERATURE 293K, VAPOR REMARK 280 DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.41000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.41000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.84500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.36000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.84500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.36000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.41000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.84500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.36000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.41000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.84500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.36000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.72000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 166.82000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 682 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 69 REMARK 465 SER A 70 REMARK 465 PRO A 71 REMARK 465 GLY A 72 REMARK 465 ILE A 73 REMARK 465 SER A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 LYS A 434 REMARK 465 ILE A 435 REMARK 465 ALA A 436 REMARK 465 GLY A 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LEU A 125 O HOH A 671 1.98 REMARK 500 OE1 GLU A 426 O HOH A 654 2.03 REMARK 500 OG SER A 380 O HOH A 641 2.04 REMARK 500 OE1 GLU A 426 O HOH A 605 2.04 REMARK 500 O ALA A 200 N LYS A 202 2.11 REMARK 500 O GLU A 287 O PRO A 350 2.13 REMARK 500 O LEU A 154 N GLN A 156 2.14 REMARK 500 O GLN A 122 O PRO A 124 2.16 REMARK 500 OD1 ASP A 300 O HOH A 610 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 605 O HOH A 605 3555 2.15 REMARK 500 O TRP A 375 O HOH A 602 4566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 375 NE1 TRP A 375 CE2 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 81 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 PRO A 86 C - N - CA ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO A 89 C - N - CA ANGL. DEV. = 18.9 DEGREES REMARK 500 PRO A 89 C - N - CD ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO A 124 C - N - CA ANGL. DEV. = -13.6 DEGREES REMARK 500 GLY A 164 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 PHE A 165 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 VAL A 191 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG A 194 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 PRO A 201 C - N - CA ANGL. DEV. = -17.2 DEGREES REMARK 500 LYS A 202 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 PRO A 222 C - N - CD ANGL. DEV. = -15.1 DEGREES REMARK 500 GLN A 297 N - CA - C ANGL. DEV. = -23.3 DEGREES REMARK 500 THR A 298 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 VAL A 319 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ASP A 367 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 GLN A 372 N - CA - C ANGL. DEV. = 20.3 DEGREES REMARK 500 TRP A 375 CD2 - CE2 - CZ2 ANGL. DEV. = 9.4 DEGREES REMARK 500 TRP A 375 CE2 - CD2 - CG ANGL. DEV. = 7.7 DEGREES REMARK 500 ASN A 388 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 LEU A 390 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 ASP A 391 N - CA - C ANGL. DEV. = 19.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 87 -24.03 66.76 REMARK 500 ASP A 90 -15.69 89.69 REMARK 500 PRO A 124 -151.37 -67.30 REMARK 500 LEU A 125 -53.26 63.14 REMARK 500 VAL A 137 -18.39 -35.32 REMARK 500 GLN A 155 86.84 -52.88 REMARK 500 GLN A 156 29.25 166.47 REMARK 500 ILE A 161 -72.46 -65.58 REMARK 500 VAL A 162 -92.90 -62.69 REMARK 500 ALA A 163 -74.62 -4.75 REMARK 500 ALA A 166 137.29 68.14 REMARK 500 GLU A 167 -105.00 5.71 REMARK 500 LYS A 189 92.45 -63.71 REMARK 500 ILE A 190 34.28 170.72 REMARK 500 ASP A 193 124.48 -23.57 REMARK 500 ARG A 194 -179.15 95.69 REMARK 500 ALA A 198 26.31 -70.48 REMARK 500 VAL A 199 -33.80 -161.32 REMARK 500 ALA A 200 -70.46 -49.67 REMARK 500 PRO A 201 57.32 -66.29 REMARK 500 MET A 217 -119.77 -70.59 REMARK 500 ASP A 219 -154.40 -115.92 REMARK 500 PHE A 221 172.20 51.44 REMARK 500 PRO A 222 104.50 17.09 REMARK 500 GLU A 224 -141.67 -126.14 REMARK 500 ARG A 230 15.01 -65.32 REMARK 500 ASN A 252 86.69 82.46 REMARK 500 ILE A 253 110.90 93.78 REMARK 500 ARG A 280 23.37 -74.10 REMARK 500 SER A 291 -178.72 178.64 REMARK 500 ASP A 300 -77.91 -137.12 REMARK 500 GLU A 302 -141.63 -110.21 REMARK 500 PRO A 304 137.45 -32.87 REMARK 500 ILE A 309 -80.26 -123.60 REMARK 500 GLU A 314 109.39 141.32 REMARK 500 LYS A 315 132.14 136.81 REMARK 500 ARG A 317 -146.17 62.63 REMARK 500 PRO A 320 -98.74 -67.05 REMARK 500 GLU A 322 -88.50 -166.85 REMARK 500 ILE A 323 18.52 102.73 REMARK 500 MET A 324 159.10 33.91 REMARK 500 VAL A 325 -178.05 -12.36 REMARK 500 THR A 326 -78.59 -60.25 REMARK 500 LYS A 329 -102.46 144.80 REMARK 500 THR A 330 131.93 37.25 REMARK 500 PRO A 331 118.55 -24.50 REMARK 500 PHE A 332 -170.60 8.11 REMARK 500 TYR A 333 108.80 169.87 REMARK 500 SER A 335 -27.99 172.28 REMARK 500 PHE A 351 94.44 120.75 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3RFY A 83 437 UNP Q9SSA5 CYP38_ARATH 83 437 SEQADV 3RFY GLY A 69 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY SER A 70 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY PRO A 71 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY GLY A 72 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY ILE A 73 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY SER A 74 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY GLY A 75 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY GLY A 76 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY GLY A 77 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY GLY A 78 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY GLY A 79 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY ILE A 80 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY LEU A 81 UNP Q9SSA5 EXPRESSION TAG SEQADV 3RFY LEU A 82 UNP Q9SSA5 EXPRESSION TAG SEQRES 1 A 369 GLY SER PRO GLY ILE SER GLY GLY GLY GLY GLY ILE LEU SEQRES 2 A 369 LEU VAL ALA ASN PRO VAL ILE PRO ASP VAL SER VAL LEU SEQRES 3 A 369 ILE SER GLY PRO PRO ILE LYS ASP PRO GLU ALA LEU LEU SEQRES 4 A 369 ARG TYR ALA LEU PRO ILE ASP ASN LYS ALA ILE ARG GLU SEQRES 5 A 369 VAL GLN LYS PRO LEU GLU ASP ILE THR ASP SER LEU LYS SEQRES 6 A 369 ILE ALA GLY VAL LYS ALA LEU ASP SER VAL GLU ARG ASN SEQRES 7 A 369 VAL ARG GLN ALA SER ARG THR LEU GLN GLN GLY LYS SER SEQRES 8 A 369 ILE ILE VAL ALA GLY PHE ALA GLU SER LYS LYS ASP HIS SEQRES 9 A 369 GLY ASN GLU MET ILE GLU LYS LEU GLU ALA GLY MET GLN SEQRES 10 A 369 ASP MET LEU LYS ILE VAL GLU ASP ARG LYS ARG ASP ALA SEQRES 11 A 369 VAL ALA PRO LYS GLN LYS GLU ILE LEU LYS TYR VAL GLY SEQRES 12 A 369 GLY ILE GLU GLU ASP MET VAL ASP GLY PHE PRO TYR GLU SEQRES 13 A 369 VAL PRO GLU GLU TYR ARG ASN MET PRO LEU LEU LYS GLY SEQRES 14 A 369 ARG ALA SER VAL ASP MET LYS VAL LYS ILE LYS ASP ASN SEQRES 15 A 369 PRO ASN ILE GLU ASP CYS VAL PHE ARG ILE VAL LEU ASP SEQRES 16 A 369 GLY TYR ASN ALA PRO VAL THR ALA GLY ASN PHE VAL ASP SEQRES 17 A 369 LEU VAL GLU ARG HIS PHE TYR ASP GLY MET GLU ILE GLN SEQRES 18 A 369 ARG SER ASP GLY PHE VAL VAL GLN THR GLY ASP PRO GLU SEQRES 19 A 369 GLY PRO ALA GLU GLY PHE ILE ASP PRO SER THR GLU LYS SEQRES 20 A 369 THR ARG THR VAL PRO LEU GLU ILE MET VAL THR GLY GLU SEQRES 21 A 369 LYS THR PRO PHE TYR GLY SER THR LEU GLU GLU LEU GLY SEQRES 22 A 369 LEU TYR LYS ALA GLN VAL VAL ILE PRO PHE ASN ALA PHE SEQRES 23 A 369 GLY THR MET ALA MET ALA ARG GLU GLU PHE GLU ASN ASP SEQRES 24 A 369 SER GLY SER SER GLN VAL PHE TRP LEU LEU LYS GLU SER SEQRES 25 A 369 GLU LEU THR PRO SER ASN SER ASN ILE LEU ASP GLY ARG SEQRES 26 A 369 TYR ALA VAL PHE GLY TYR VAL THR ASP ASN GLU ASP PHE SEQRES 27 A 369 LEU ALA ASP LEU LYS VAL GLY ASP VAL ILE GLU SER ILE SEQRES 28 A 369 GLN VAL VAL SER GLY LEU GLU ASN LEU ALA ASN PRO SER SEQRES 29 A 369 TYR LYS ILE ALA GLY FORMUL 2 HOH *114(H2 O) HELIX 1 1 ASP A 102 LEU A 111 1 10 HELIX 2 2 ASN A 115 ASP A 127 1 13 HELIX 3 3 ASP A 127 LEU A 132 1 6 HELIX 4 4 ALA A 139 GLN A 155 1 17 HELIX 5 5 GLN A 156 VAL A 162 1 7 HELIX 6 6 ALA A 166 SER A 168 5 3 HELIX 7 7 LYS A 169 LYS A 189 1 21 HELIX 8 8 VAL A 199 PRO A 201 5 3 HELIX 9 9 LYS A 202 MET A 217 1 16 HELIX 10 10 ALA A 267 ARG A 280 1 14 HELIX 11 11 LEU A 337 LEU A 340 5 4 HELIX 12 12 ASP A 405 LEU A 410 5 6 HELIX 13 13 GLY A 424 GLU A 426 5 3 SHEET 1 A11 MET A 286 GLU A 287 0 SHEET 2 A11 VAL A 415 SER A 423 -1 O ILE A 416 N MET A 286 SHEET 3 A11 ARG A 238 LYS A 246 -1 N SER A 240 O VAL A 422 SHEET 4 A11 ASP A 255 ASP A 263 -1 O PHE A 258 N MET A 243 SHEET 5 A11 TYR A 394 ASP A 402 -1 O PHE A 397 N ASP A 263 SHEET 6 A11 LYS A 378 LEU A 382 1 N SER A 380 O TYR A 394 SHEET 7 A11 GLN A 289 VAL A 296 1 N PHE A 294 O GLU A 379 SHEET 8 A11 LEU A 342 ILE A 349 -1 O VAL A 347 N SER A 291 SHEET 9 A11 VAL A 93 SER A 96 -1 N SER A 96 O GLN A 346 SHEET 10 A11 ILE A 80 ALA A 84 -1 N LEU A 81 O ILE A 95 SHEET 11 A11 TYR A 394 ASP A 402 -1 O ALA A 395 N ALA A 84 SHEET 1 B 2 LEU A 234 LEU A 235 0 SHEET 2 B 2 LEU A 428 ALA A 429 -1 O ALA A 429 N LEU A 234 CRYST1 57.690 96.720 166.820 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005994 0.00000