PDB Short entry for 3RG0 HEADER CHAPERONE 07-APR-11 3RG0 TITLE STRUCTURAL AND FUNCTIONAL RELATIONSHIPS BETWEEN THE LECTIN AND ARM TITLE 2 DOMAINS OF CALRETICULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALRETICULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LECTIN DOMAIN WITH PARTIALLY TRUNCATED ARM DOMAIN, UNP COMPND 5 RESIDUES 18-238 AND 273-284; COMPND 6 SYNONYM: CRP55, CALREGULIN, ENDOPLASMIC RETICULUM RESIDENT PROTEIN COMPND 7 60, ERP60, HACBP; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CALR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS BETA-SANDWICH, CHAPERONE, MONOGLUCOSYLATED PROTEINS BINDING, KEYWDS 2 CARBOHYDRATE BINDING, CALCIUM BINDING, ENDOPLASMIC RETICULUM EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,C.L.POCANSCHI,U.BROCKMEIER,D.B.WILLIAMS,K.GEHRING REVDAT 5 13-SEP-23 3RG0 1 REMARK SEQADV LINK REVDAT 4 26-JUL-17 3RG0 1 SOURCE REMARK REVDAT 3 31-AUG-11 3RG0 1 JRNL REVDAT 2 13-JUL-11 3RG0 1 JRNL REVDAT 1 01-JUN-11 3RG0 0 JRNL AUTH C.L.POCANSCHI,G.KOZLOV,U.BROCKMEIER,A.BROCKMEIER, JRNL AUTH 2 D.B.WILLIAMS,K.GEHRING JRNL TITL STRUCTURAL AND FUNCTIONAL RELATIONSHIPS BETWEEN THE LECTIN JRNL TITL 2 AND ARM DOMAINS OF CALRETICULIN. JRNL REF J.BIOL.CHEM. V. 286 27266 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21652723 JRNL DOI 10.1074/JBC.M111.258467 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 10321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 516 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2332 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.87000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 1.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.010 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.361 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.235 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2394 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3239 ; 1.061 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 7.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;34.293 ;25.528 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 399 ;15.761 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;14.126 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1866 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 887 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1574 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.146 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 0.212 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2324 ; 0.377 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1048 ; 0.375 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 915 ; 0.626 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7554 2.2982 5.4934 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.1736 REMARK 3 T33: 0.2013 T12: -0.0284 REMARK 3 T13: 0.0185 T23: 0.1084 REMARK 3 L TENSOR REMARK 3 L11: 1.1841 L22: 3.5652 REMARK 3 L33: 1.9581 L12: -0.1174 REMARK 3 L13: 0.2496 L23: -0.9216 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.1492 S13: -0.1573 REMARK 3 S21: 0.0827 S22: 0.2256 S23: 0.4969 REMARK 3 S31: 0.0899 S32: -0.3119 S33: -0.2397 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4005 3.5395 9.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.1467 REMARK 3 T33: 0.1634 T12: 0.0029 REMARK 3 T13: -0.0124 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 2.2460 L22: 2.5930 REMARK 3 L33: 2.7278 L12: -0.5443 REMARK 3 L13: 0.5868 L23: -0.9581 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.1855 S13: 0.0033 REMARK 3 S21: 0.2697 S22: 0.0420 S23: -0.0982 REMARK 3 S31: -0.0353 S32: 0.0746 S33: -0.0094 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): 46.2589 5.3717 32.0533 REMARK 3 T TENSOR REMARK 3 T11: 0.3250 T22: 0.2347 REMARK 3 T33: 0.1417 T12: -0.0453 REMARK 3 T13: 0.0017 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 1.4069 L22: 0.2285 REMARK 3 L33: 1.0051 L12: -0.5670 REMARK 3 L13: 1.1891 L23: -0.4793 REMARK 3 S TENSOR REMARK 3 S11: 0.2240 S12: 0.2298 S13: 0.0288 REMARK 3 S21: -0.2428 S22: 0.1899 S23: -0.2253 REMARK 3 S31: -0.3506 S32: 0.2341 S33: -0.4139 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1070 -0.2778 16.4298 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1550 REMARK 3 T33: 0.0431 T12: 0.0139 REMARK 3 T13: 0.0136 T23: 0.0830 REMARK 3 L TENSOR REMARK 3 L11: 1.1278 L22: 1.3061 REMARK 3 L33: 1.2686 L12: 0.3746 REMARK 3 L13: 0.2102 L23: 0.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.1072 S12: -0.3990 S13: -0.2580 REMARK 3 S21: 0.3865 S22: 0.0762 S23: -0.0120 REMARK 3 S31: 0.2009 S32: -0.0094 S33: -0.1834 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3885 2.7924 -11.6595 REMARK 3 T TENSOR REMARK 3 T11: 0.3100 T22: 0.1069 REMARK 3 T33: 0.0505 T12: 0.0029 REMARK 3 T13: -0.0227 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.7669 L22: 11.5781 REMARK 3 L33: 11.0040 L12: -3.1151 REMARK 3 L13: 3.0924 L23: -9.7020 REMARK 3 S TENSOR REMARK 3 S11: 0.2062 S12: 0.4041 S13: 0.1508 REMARK 3 S21: -0.9264 S22: -0.3394 S23: -0.2413 REMARK 3 S31: 0.2128 S32: 0.3661 S33: 0.1332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3O0V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 0.1 M MIB BUFFER, PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.53100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.19300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.85050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.19300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.53100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.85050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 MET A 17 REMARK 465 ASP A 226 REMARK 465 ASP A 227 REMARK 465 PRO A 228 REMARK 465 THR A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 LYS A 232 REMARK 465 PRO A 233 REMARK 465 GLU A 234 REMARK 465 ASP A 235 REMARK 465 TRP A 236 REMARK 465 ASP A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 SER A 241 REMARK 465 GLY A 242 REMARK 465 GLY A 273 REMARK 465 GLU A 274 REMARK 465 TRP A 275 REMARK 465 LYS A 276 REMARK 465 PRO A 277 REMARK 465 ARG A 278 REMARK 465 GLN A 279 REMARK 465 ILE A 280 REMARK 465 ASP A 281 REMARK 465 ASN A 282 REMARK 465 PRO A 283 REMARK 465 LYS A 368 REMARK 465 LEU A 369 REMARK 465 GLU A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 ILE A 225 CG1 CG2 CD1 REMARK 470 ASP A 284 CG OD1 OD2 REMARK 470 TYR A 285 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 GLN A 365 CG CD OE1 NE2 REMARK 470 LEU A 367 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 216 C - N - CA ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 53.36 -109.53 REMARK 500 ALA A 32 3.20 -64.72 REMARK 500 ASP A 45 48.93 -108.36 REMARK 500 ALA A 76 88.97 -155.43 REMARK 500 ASN A 102 46.59 76.13 REMARK 500 ASN A 188 14.89 59.58 REMARK 500 ASP A 201 67.17 -109.53 REMARK 500 PRO A 216 80.75 24.54 REMARK 500 LYS A 286 -158.50 -127.28 REMARK 500 TRP A 289 96.78 -65.68 REMARK 500 VAL A 321 -70.63 -88.38 REMARK 500 THR A 346 -70.43 -126.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 215 PRO A 216 60.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 26 O REMARK 620 2 LYS A 62 O 133.3 REMARK 620 3 LYS A 64 O 89.5 108.8 REMARK 620 4 ASP A 328 OD1 79.4 145.2 78.2 REMARK 620 5 ASP A 328 OD2 127.7 97.4 84.3 48.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 DBREF 3RG0 A 18 238 UNP P14211 CALR_MOUSE 18 238 DBREF 3RG0 A 273 368 UNP P14211 CALR_MOUSE 273 368 SEQADV 3RG0 GLY A 15 UNP P14211 EXPRESSION TAG SEQADV 3RG0 SER A 16 UNP P14211 EXPRESSION TAG SEQADV 3RG0 MET A 17 UNP P14211 EXPRESSION TAG SEQADV 3RG0 SER A 163 UNP P14211 CYS 163 ENGINEERED MUTATION SEQADV 3RG0 GLY A 239 UNP P14211 LINKER SEQADV 3RG0 GLY A 240 UNP P14211 LINKER SEQADV 3RG0 SER A 241 UNP P14211 LINKER SEQADV 3RG0 GLY A 242 UNP P14211 LINKER SEQADV 3RG0 LEU A 369 UNP P14211 EXPRESSION TAG SEQADV 3RG0 GLU A 370 UNP P14211 EXPRESSION TAG SEQADV 3RG0 HIS A 371 UNP P14211 EXPRESSION TAG SEQADV 3RG0 HIS A 372 UNP P14211 EXPRESSION TAG SEQADV 3RG0 HIS A 373 UNP P14211 EXPRESSION TAG SEQADV 3RG0 HIS A 374 UNP P14211 EXPRESSION TAG SEQADV 3RG0 HIS A 375 UNP P14211 EXPRESSION TAG SEQADV 3RG0 HIS A 376 UNP P14211 EXPRESSION TAG SEQRES 1 A 332 GLY SER MET ASP PRO ALA ILE TYR PHE LYS GLU GLN PHE SEQRES 2 A 332 LEU ASP GLY ASP ALA TRP THR ASN ARG TRP VAL GLU SER SEQRES 3 A 332 LYS HIS LYS SER ASP PHE GLY LYS PHE VAL LEU SER SER SEQRES 4 A 332 GLY LYS PHE TYR GLY ASP LEU GLU LYS ASP LYS GLY LEU SEQRES 5 A 332 GLN THR SER GLN ASP ALA ARG PHE TYR ALA LEU SER ALA SEQRES 6 A 332 LYS PHE GLU PRO PHE SER ASN LYS GLY GLN THR LEU VAL SEQRES 7 A 332 VAL GLN PHE THR VAL LYS HIS GLU GLN ASN ILE ASP CYS SEQRES 8 A 332 GLY GLY GLY TYR VAL LYS LEU PHE PRO SER GLY LEU ASP SEQRES 9 A 332 GLN LYS ASP MET HIS GLY ASP SER GLU TYR ASN ILE MET SEQRES 10 A 332 PHE GLY PRO ASP ILE CYS GLY PRO GLY THR LYS LYS VAL SEQRES 11 A 332 HIS VAL ILE PHE ASN TYR LYS GLY LYS ASN VAL LEU ILE SEQRES 12 A 332 ASN LYS ASP ILE ARG SER LYS ASP ASP GLU PHE THR HIS SEQRES 13 A 332 LEU TYR THR LEU ILE VAL ARG PRO ASP ASN THR TYR GLU SEQRES 14 A 332 VAL LYS ILE ASP ASN SER GLN VAL GLU SER GLY SER LEU SEQRES 15 A 332 GLU ASP ASP TRP ASP PHE LEU PRO PRO LYS LYS ILE LYS SEQRES 16 A 332 ASP PRO ASP ALA ALA LYS PRO GLU ASP TRP ASP GLU ARG SEQRES 17 A 332 ALA LYS ILE ASP ASP PRO THR ASP SER LYS PRO GLU ASP SEQRES 18 A 332 TRP ASP LYS GLY GLY SER GLY GLY GLU TRP LYS PRO ARG SEQRES 19 A 332 GLN ILE ASP ASN PRO ASP TYR LYS GLY THR TRP ILE HIS SEQRES 20 A 332 PRO GLU ILE ASP ASN PRO GLU TYR SER PRO ASP ALA ASN SEQRES 21 A 332 ILE TYR ALA TYR ASP SER PHE ALA VAL LEU GLY LEU ASP SEQRES 22 A 332 LEU TRP GLN VAL LYS SER GLY THR ILE PHE ASP ASN PHE SEQRES 23 A 332 LEU ILE THR ASN ASP GLU ALA TYR ALA GLU GLU PHE GLY SEQRES 24 A 332 ASN GLU THR TRP GLY VAL THR LYS ALA ALA GLU LYS GLN SEQRES 25 A 332 MET LYS ASP LYS GLN ASP GLU GLU GLN ARG LEU LYS LEU SEQRES 26 A 332 GLU HIS HIS HIS HIS HIS HIS HET CA A 1 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *26(H2 O) HELIX 1 1 ASP A 29 ASN A 35 5 7 HELIX 2 2 ASP A 118 MET A 122 5 5 HELIX 3 3 LEU A 196 TRP A 200 1 5 HELIX 4 4 ASP A 335 GLU A 345 1 11 HELIX 5 5 THR A 346 LEU A 367 1 22 SHEET 1 A 4 ILE A 21 GLU A 25 0 SHEET 2 A 4 THR A 325 THR A 333 -1 O ILE A 332 N PHE A 23 SHEET 3 A 4 GLY A 65 THR A 68 -1 N LEU A 66 O PHE A 327 SHEET 4 A 4 PHE A 49 SER A 52 -1 N VAL A 50 O GLN A 67 SHEET 1 B 6 ILE A 21 GLU A 25 0 SHEET 2 B 6 THR A 325 THR A 333 -1 O ILE A 332 N PHE A 23 SHEET 3 B 6 LEU A 91 HIS A 99 -1 N GLN A 94 O LEU A 331 SHEET 4 B 6 THR A 169 VAL A 176 -1 O VAL A 176 N LEU A 91 SHEET 5 B 6 THR A 181 ILE A 186 -1 O GLU A 183 N ILE A 175 SHEET 6 B 6 SER A 189 SER A 195 -1 O VAL A 191 N VAL A 184 SHEET 1 C 7 TRP A 37 GLU A 39 0 SHEET 2 C 7 ARG A 73 PHE A 84 -1 O SER A 78 N VAL A 38 SHEET 3 C 7 PHE A 311 GLN A 320 -1 O LEU A 316 N LEU A 77 SHEET 4 C 7 CYS A 105 GLY A 107 -1 N GLY A 107 O TRP A 319 SHEET 5 C 7 ILE A 130 CYS A 137 -1 O ILE A 136 N GLY A 106 SHEET 6 C 7 THR A 141 TYR A 150 -1 O HIS A 145 N GLY A 133 SHEET 7 C 7 LYS A 153 LEU A 156 -1 O LYS A 153 N TYR A 150 SHEET 1 D 7 TRP A 37 GLU A 39 0 SHEET 2 D 7 ARG A 73 PHE A 84 -1 O SER A 78 N VAL A 38 SHEET 3 D 7 PHE A 311 GLN A 320 -1 O LEU A 316 N LEU A 77 SHEET 4 D 7 VAL A 110 PHE A 113 -1 N LYS A 111 O GLY A 315 SHEET 5 D 7 ILE A 130 CYS A 137 -1 O PHE A 132 N VAL A 110 SHEET 6 D 7 THR A 141 TYR A 150 -1 O HIS A 145 N GLY A 133 SHEET 7 D 7 LYS A 153 LEU A 156 -1 O LYS A 153 N TYR A 150 SHEET 1 E 2 LYS A 207 LYS A 209 0 SHEET 2 E 2 GLU A 293 ASP A 295 -1 O ILE A 294 N ILE A 208 SSBOND 1 CYS A 105 CYS A 137 1555 1555 2.06 LINK CA CA A 1 O GLN A 26 1555 1555 2.35 LINK CA CA A 1 O LYS A 62 1555 1555 2.23 LINK CA CA A 1 O LYS A 64 1555 1555 2.47 LINK CA CA A 1 OD1 ASP A 328 1555 1555 2.63 LINK CA CA A 1 OD2 ASP A 328 1555 1555 2.74 SITE 1 AC1 4 GLN A 26 LYS A 62 LYS A 64 ASP A 328 CRYST1 43.062 71.701 108.386 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023222 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009226 0.00000