PDB Short entry for 3RJH
HEADER    TRANSFERASE, LYASE/DNA                  15-APR-11   3RJH              
TITLE     TERNARY COMPLEX OF DNA POLYMERASE BETA WITH A GAPPED DNA CONTAINING   
TITLE    2 (SYN)8ODG:DA AT PRIMER TERMINUS AND DG:DCMP(CF2)PPIN THE ACTIVE SITE 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE BETA;                                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 2.7.7.7, 4.2.99.-;                                               
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: DNA (5'-D(*CP*CP*GP*AP*CP*GP*(8OG)                         
COMPND   8 P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3');                                    
COMPND   9 CHAIN: T;                                                            
COMPND  10 ENGINEERED: YES;                                                     
COMPND  11 MOL_ID: 3;                                                           
COMPND  12 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3');              
COMPND  13 CHAIN: P;                                                            
COMPND  14 ENGINEERED: YES;                                                     
COMPND  15 MOL_ID: 4;                                                           
COMPND  16 MOLECULE: DNA (5'-D(P*GP*TP*CP*GP*G)-3');                            
COMPND  17 CHAIN: D;                                                            
COMPND  18 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLB;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: TAP56;                                     
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PWL11;                                    
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 MOL_ID: 3;                                                           
SOURCE  14 SYNTHETIC: YES;                                                      
SOURCE  15 MOL_ID: 4;                                                           
SOURCE  16 SYNTHETIC: YES                                                       
KEYWDS    MUTAGENESIS, G-T TRANSVERSION, DNA POLYMERASE, OXIDATIVE DAMAGE,      
KEYWDS   2 TRANSFERASE, LYASE-DNA COMPLEX                                       
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    V.K.BATRA,W.A.BEARD,S.H.WILSON                                        
REVDAT   1   18-JAN-12 3RJH    0                                                
JRNL        AUTH   V.K.BATRA,D.D.SHOCK,W.A.BEARD,C.E.MCKENNA,S.H.WILSON         
JRNL        TITL   BINARY COMPLEX CRYSTAL STRUCTURE OF DNA POLYMERASE BETA      
JRNL        TITL 2 REVEALS MULTIPLE CONFORMATIONS OF THE TEMPLATING             
JRNL        TITL 3 8-OXOGUANINE LESION                                          
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 109   113 2012              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   22178760                                                     
JRNL        DOI    10.1073/PNAS.1112235108                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.20 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 21.35                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 482367.320                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 88.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 18949                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.204                           
REMARK   3   FREE R VALUE                     : 0.259                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 9.900                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1869                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.006                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.20                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.34                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 90.90                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 2848                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2500                       
REMARK   3   BIN FREE R VALUE                    : 0.3230                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 11.00                        
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 351                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.017                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2608                                    
REMARK   3   NUCLEIC ACID ATOMS       : 635                                     
REMARK   3   HETEROGEN ATOMS          : 38                                      
REMARK   3   SOLVENT ATOMS            : 302                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 21.50                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 33.70                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 4.29000                                              
REMARK   3    B22 (A**2) : -2.42000                                             
REMARK   3    B33 (A**2) : -1.86000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 5.43000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.26                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.24                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.35                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.36                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.005                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.10                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 24.00                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.92                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.330 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.110 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 2.080 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 3.030 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.34                                                 
REMARK   3   BSOL        : 42.69                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : CTF.PARAM                                      
REMARK   3  PARAMETER FILE  2  : NULL                                           
REMARK   3  PARAMETER FILE  3  : NULL                                           
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  PARAMETER FILE  5  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : DNA-RNA.TOP                                    
REMARK   3  TOPOLOGY FILE  3   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  4   : 8OG.TOP                                        
REMARK   3  TOPOLOGY FILE  5   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3RJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-11.                  
REMARK 100 THE RCSB ID CODE IS RCSB065007.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 17-APR-06                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU MICROMAX-007 HF             
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU SATURN 92                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 18949                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.200                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 3.500                              
REMARK 200  R MERGE                    (I) : 0.07500                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 15.8000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.28                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.36100                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.210                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 2FMS                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 44.84                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM IMIDAZOLE, PH 7.5, 350 MM SODIUM   
REMARK 280  ACETATE, 18 % PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE   
REMARK 280  291K                                                                
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       39.95500            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19580 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL                       
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     SER A     2                                                      
REMARK 465     LYS A     3                                                      
REMARK 465     ARG A     4                                                      
REMARK 465     LYS A     5                                                      
REMARK 465     ALA A     6                                                      
REMARK 465     PRO A     7                                                      
REMARK 465     GLN A     8                                                      
REMARK 465     GLU A     9                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 248    CG   CD   CE   NZ                                   
REMARK 470     VAL A 303    CG1  CG2                                            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DG D   1   P      DG D   1   OP3    -0.084                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ALA A  32       78.05   -116.85                                   
REMARK 500    ASP A 170      113.71   -167.96                                   
REMARK 500    CYS A 178     -127.09   -112.59                                   
REMARK 500    ASP A 246      -17.47     70.77                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A 672        DISTANCE =  7.13 ANGSTROMS                       
REMARK 525    HOH A 673        DISTANCE =  5.80 ANGSTROMS                       
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 402  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 6CF A 401   O1G                                                    
REMARK 620 2 6CF A 401   O1A  99.1                                              
REMARK 620 3 ASP A 190   OD1  86.2 108.6                                        
REMARK 620 4 6CF A 401   O2B  84.6  90.2 160.1                                  
REMARK 620 5 ASP A 192   OD2 168.7  86.7 101.2  85.7                            
REMARK 620 6 HOH A 503   O    86.1 173.4  75.8  86.0  87.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 403  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 190   OD2                                                    
REMARK 620 2 ASP A 256   OD2  87.9                                              
REMARK 620 3 ASP A 192   OD1  97.6  89.8                                        
REMARK 620 4 6CF A 401   O1A  98.3 173.1  92.4                                  
REMARK 620 5  DA P  10   O3' 167.5  83.0  90.9  90.4                            
REMARK 620 6 HOH A 505   O    88.6  93.5 173.1  83.6  83.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 404  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1  DG P   9   OP1                                                    
REMARK 620 2 THR A 101   O   160.7                                              
REMARK 620 3 ILE A 106   O   103.5  87.4                                        
REMARK 620 4 VAL A 103   O   102.8  92.7  91.0                                  
REMARK 620 5 HOH A 524   O    97.2  66.9  88.0 159.6                            
REMARK 620 6 HOH A 584   O    91.6  79.9 163.8  79.7  96.1                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 405  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LYS A  60   O                                                      
REMARK 620 2 LEU A  62   O    86.0                                              
REMARK 620 3  DC D   3   OP1 167.5  92.8                                        
REMARK 620 4 VAL A  65   O    86.5  85.4  81.0                                  
REMARK 620 5 HOH D 108   O   101.1 169.2  78.5  86.8                            
REMARK 620 6 HOH A 595   O    97.4  74.4  94.2 159.1 112.3                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6CF A 401                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 407                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 408                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC9                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 409                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3RJE   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3RJF   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3RJG   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3RJI   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3RJJ   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3RJK   RELATED DB: PDB                                   
DBREF  3RJH A    1   335  UNP    P06746   DPOLB_HUMAN      1    335             
DBREF  3RJH T    1    16  PDB    3RJH     3RJH             1     16             
DBREF  3RJH P    1    10  PDB    3RJH     3RJH             1     10             
DBREF  3RJH D    1     5  PDB    3RJH     3RJH             1      5             
SEQRES   1 A  335  MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY          
SEQRES   2 A  335  GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU          
SEQRES   3 A  335  LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR          
SEQRES   4 A  335  ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS          
SEQRES   5 A  335  ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL          
SEQRES   6 A  335  GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA          
SEQRES   7 A  335  THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP          
SEQRES   8 A  335  ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER          
SEQRES   9 A  335  GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU          
SEQRES  10 A  335  GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP          
SEQRES  11 A  335  LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE          
SEQRES  12 A  335  GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU          
SEQRES  13 A  335  GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL          
SEQRES  14 A  335  ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG          
SEQRES  15 A  335  ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU          
SEQRES  16 A  335  THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO          
SEQRES  17 A  335  LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL          
SEQRES  18 A  335  HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS          
SEQRES  19 A  335  PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU          
SEQRES  20 A  335  LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE          
SEQRES  21 A  335  PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR          
SEQRES  22 A  335  GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA          
SEQRES  23 A  335  LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG          
SEQRES  24 A  335  PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO          
SEQRES  25 A  335  VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP          
SEQRES  26 A  335  LYS TYR ARG GLU PRO LYS ASP ARG SER GLU                      
SEQRES   1 T   16   DC  DC  DG  DA  DC  DG 8OG  DC  DG  DC  DA  DT  DC          
SEQRES   2 T   16   DA  DG  DC                                                  
SEQRES   1 P   10   DG  DC  DT  DG  DA  DT  DG  DC  DG  DA                      
SEQRES   1 D    5   DG  DT  DC  DG  DG                                          
MODRES 3RJH 8OG T    7   DG                                                     
HET    8OG  T   7      23                                                       
HET    6CF  A 401      30                                                       
HET     MG  A 402       1                                                       
HET     MG  A 403       1                                                       
HET     NA  A 404       1                                                       
HET     NA  A 405       1                                                       
HET     CL  A 406       1                                                       
HET     CL  A 407       1                                                       
HET     CL  A 408       1                                                       
HET     CL  A 409       1                                                       
HETNAM     8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE                        
HETNAM     6CF 2'-DEOXY-5'-O-[(S)-{DIFLUORO[(S)-HYDROXY(PHOSPHONOOXY)           
HETNAM   2 6CF  PHOSPHORYL]METHYL}(HYDROXY)PHOSPHORYL]CYTIDINE                  
HETNAM      MG MAGNESIUM ION                                                    
HETNAM      NA SODIUM ION                                                       
HETNAM      CL CHLORIDE ION                                                     
HETSYN     8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE            
FORMUL   2  8OG    C10 H14 N5 O8 P                                              
FORMUL   5  6CF    C10 H16 F2 N3 O12 P3                                         
FORMUL   6   MG    2(MG 2+)                                                     
FORMUL   8   NA    2(NA 1+)                                                     
FORMUL  10   CL    4(CL 1-)                                                     
FORMUL  14  HOH   *302(H2 O)                                                    
HELIX    1   1 ASN A   12  VAL A   29  1                                  18    
HELIX    2   2 ALA A   32  LYS A   48  1                                  17    
HELIX    3   3 SER A   55  LYS A   61  1                                   7    
HELIX    4   4 GLY A   66  GLY A   80  1                                  15    
HELIX    5   5 LEU A   82  ASP A   91  1                                  10    
HELIX    6   6 ASP A   91  THR A  101  1                                  11    
HELIX    7   7 GLY A  107  ASP A  116  1                                  10    
HELIX    8   8 THR A  121  LYS A  127  1                                   7    
HELIX    9   9 ASN A  128  LEU A  132  5                                   5    
HELIX   10  10 ASN A  133  TYR A  142  1                                  10    
HELIX   11  11 TYR A  142  LYS A  148  1                                   7    
HELIX   12  12 ARG A  152  ASP A  170  1                                  19    
HELIX   13  13 CYS A  178  ARG A  183  1                                   6    
HELIX   14  14 LYS A  209  VAL A  221  1                                  13    
HELIX   15  15 PRO A  261  ASP A  263  5                                   3    
HELIX   16  16 GLN A  264  GLY A  274  1                                  11    
HELIX   17  17 SER A  275  LYS A  289  1                                  15    
HELIX   18  18 SER A  315  ILE A  323  1                                   9    
HELIX   19  19 GLU A  329  ARG A  333  5                                   5    
SHEET    1   A 2 ILE A 150  PRO A 151  0                                        
SHEET    2   A 2 SER A 187  SER A 188 -1  O  SER A 188   N  ILE A 150           
SHEET    1   B 5 ILE A 174  VAL A 177  0                                        
SHEET    2   B 5 MET A 191  THR A 196 -1  O  LEU A 194   N  THR A 176           
SHEET    3   B 5 ARG A 253  LEU A 259  1  O  ASP A 256   N  VAL A 193           
SHEET    4   B 5 LYS A 234  CYS A 239 -1  N  CYS A 239   O  ARG A 253           
SHEET    5   B 5 ILE A 224  LYS A 230 -1  N  LEU A 228   O  MET A 236           
SHEET    1   C 2 PHE A 200  THR A 201  0                                        
SHEET    2   C 2 SER A 204  THR A 205 -1  O  SER A 204   N  THR A 201           
SHEET    1   D 2 PHE A 291  ILE A 293  0                                        
SHEET    2   D 2 ILE A 298  PRO A 300 -1  O  ARG A 299   N  THR A 292           
LINK         O3'  DG T   6                 P   8OG T   7     1555   1555  1.61  
LINK         O3' 8OG T   7                 P    DC T   8     1555   1555  1.61  
LINK         O1G 6CF A 401                MG    MG A 402     1555   1555  1.90  
LINK         O1A 6CF A 401                MG    MG A 402     1555   1555  1.93  
LINK         OD1 ASP A 190                MG    MG A 402     1555   1555  1.94  
LINK         O2B 6CF A 401                MG    MG A 402     1555   1555  2.00  
LINK         OD2 ASP A 190                MG    MG A 403     1555   1555  2.00  
LINK         OD2 ASP A 256                MG    MG A 403     1555   1555  2.02  
LINK         OD1 ASP A 192                MG    MG A 403     1555   1555  2.02  
LINK         OD2 ASP A 192                MG    MG A 402     1555   1555  2.05  
LINK         O1A 6CF A 401                MG    MG A 403     1555   1555  2.19  
LINK         O3'  DA P  10                MG    MG A 403     1555   1555  2.22  
LINK         OP1  DG P   9                NA    NA A 404     1555   1555  2.27  
LINK         O   LYS A  60                NA    NA A 405     1555   1555  2.35  
LINK         O   THR A 101                NA    NA A 404     1555   1555  2.46  
LINK         O   ILE A 106                NA    NA A 404     1555   1555  2.50  
LINK         O   VAL A 103                NA    NA A 404     1555   1555  2.52  
LINK         O   LEU A  62                NA    NA A 405     1555   1555  2.58  
LINK         OP1  DC D   3                NA    NA A 405     1555   1555  2.59  
LINK         O   VAL A  65                NA    NA A 405     1555   1555  2.68  
LINK        MG    MG A 402                 O   HOH A 503     1555   1555  2.18  
LINK        MG    MG A 403                 O   HOH A 505     1555   1555  2.24  
LINK        NA    NA A 405                 O   HOH D 108     1555   1555  2.31  
LINK        NA    NA A 404                 O   HOH A 524     1555   1555  2.37  
LINK        NA    NA A 404                 O   HOH A 584     1555   1555  2.63  
LINK        NA    NA A 405                 O   HOH A 595     1555   1555  2.70  
CISPEP   1 GLY A  274    SER A  275          0         1.34                     
SITE     1 AC1 23 GLY A 179  SER A 180  ARG A 183  SER A 188                    
SITE     2 AC1 23 GLY A 189  ASP A 190  ASP A 192  TYR A 271                    
SITE     3 AC1 23 PHE A 272  THR A 273  GLY A 274  ASP A 276                    
SITE     4 AC1 23 ASN A 279   MG A 402   MG A 403  HOH A 503                    
SITE     5 AC1 23 HOH A 504  HOH A 505  HOH A 515  HOH A 645                    
SITE     6 AC1 23 HOH A 655   DA P  10   DG T   6                               
SITE     1 AC2  5 ASP A 190  ASP A 192  6CF A 401   MG A 403                    
SITE     2 AC2  5 HOH A 503                                                     
SITE     1 AC3  7 ASP A 190  ASP A 192  ASP A 256  6CF A 401                    
SITE     2 AC3  7  MG A 402  HOH A 505   DA P  10                               
SITE     1 AC4  6 THR A 101  VAL A 103  ILE A 106  HOH A 524                    
SITE     2 AC4  6 HOH A 584   DG P   9                                          
SITE     1 AC5  6 LYS A  60  LEU A  62  VAL A  65  HOH A 595                    
SITE     2 AC5  6  DC D   3  HOH D 108                                          
SITE     1 AC6  3 ASN A 294  THR A 297  ARG A 299                               
SITE     1 AC7  3 GLN A 264  TYR A 266  CYS A 267                               
SITE     1 AC8  4 ALA A  32  ILE A  33  HIS A  34  LYS A  35                    
SITE     1 AC9  4 LYS A  81  LEU A  82  ARG A  89  HOH A 717                    
CRYST1   50.530   79.910   55.460  90.00 108.04  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.019790  0.000000  0.006446        0.00000                         
SCALE2      0.000000  0.012514  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.018963        0.00000