PDB Short entry for 3RJO HEADER HYDROLASE 15-APR-11 3RJO TITLE CRYSTAL STRUCTURE OF ERAP1 PEPTIDE BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOPLASMIC RETICULUM AMINOPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ERAP1, RESIDUES 530-941; COMPND 5 SYNONYM: ARTS-1, ADIPOCYTE-DERIVED LEUCINE AMINOPEPTIDASE, A-LAP, COMPND 6 AMINOPEPTIDASE PILS, PUROMYCIN-INSENSITIVE LEUCYL-SPECIFIC COMPND 7 AMINOPEPTIDASE, PILS-AP, TYPE 1 TUMOR NECROSIS FACTOR RECEPTOR COMPND 8 SHEDDING AMINOPEPTIDASE REGULATOR; COMPND 9 EC: 3.4.11.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERAP1, APPILS, ARTS1, KIAA0525, UNQ584/PRO1154; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ERAP1, AMINOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-C.GUO,D.LAKSHMINARASIMHAN,A.GANDHI REVDAT 2 07-MAR-12 3RJO 1 JRNL REVDAT 1 21-DEC-11 3RJO 0 JRNL AUTH A.GANDHI,D.LAKSHMINARASIMHAN,Y.SUN,H.C.GUO JRNL TITL STRUCTURAL INSIGHTS INTO THE MOLECULAR RULER MECHANISM OF JRNL TITL 2 THE ENDOPLASMIC RETICULUM AMINOPEPTIDASE ERAP1. JRNL REF SCI REP V. 1 186 2011 JRNL REFN ESSN 2045-2322 JRNL PMID 22355701 JRNL DOI 10.1038/SREP00186 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1199 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1672 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.295 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.492 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3421 ; 0.047 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4615 ; 2.113 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 6.336 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;37.927 ;24.233 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 629 ;20.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.005 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2537 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2027 ; 0.975 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3277 ; 1.896 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1394 ; 3.353 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1338 ; 5.337 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB065014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23337 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 6000, 0.2M MGCL, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 551 REMARK 465 GLY A 552 REMARK 465 SER A 553 REMARK 465 ASP A 554 REMARK 465 GLY A 555 REMARK 465 ALA A 556 REMARK 465 PRO A 557 REMARK 465 ASP A 558 REMARK 465 THR A 559 REMARK 465 GLY A 560 REMARK 465 GLY A 902 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 561 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 615 CG OD1 OD2 REMARK 470 LEU A 793 CG CD1 CD2 REMARK 470 ARG A 885 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 899 CG CD CE NZ REMARK 470 GLN A 910 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 CYS A 743 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 736 CB CYS A 736 SG 0.203 REMARK 500 CYS A 743 CA CYS A 743 CB -0.251 REMARK 500 CYS A 743 CB CYS A 743 SG 0.403 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 587 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 CYS A 743 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 CYS A 743 N - CA - CB ANGL. DEV. = -14.7 DEGREES REMARK 500 CYS A 743 CA - CB - SG ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 854 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 575 -75.99 -94.80 REMARK 500 GLU A 613 168.95 68.86 REMARK 500 MET A 692 35.18 -146.64 REMARK 500 GLU A 865 138.15 92.55 REMARK 500 SER A 883 31.97 -147.81 REMARK 500 LYS A 899 -114.15 56.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 931 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 DBREF 3RJO A 529 941 UNP Q9NZ08 ERAP1_HUMAN 529 941 SEQADV 3RJO HIS A 942 UNP Q9NZ08 EXPRESSION TAG SEQADV 3RJO HIS A 943 UNP Q9NZ08 EXPRESSION TAG SEQADV 3RJO HIS A 944 UNP Q9NZ08 EXPRESSION TAG SEQADV 3RJO HIS A 945 UNP Q9NZ08 EXPRESSION TAG SEQADV 3RJO HIS A 946 UNP Q9NZ08 EXPRESSION TAG SEQADV 3RJO HIS A 947 UNP Q9NZ08 EXPRESSION TAG SEQRES 1 A 419 GLY PHE PRO LEU ILE THR ILE THR VAL ARG GLY ARG ASN SEQRES 2 A 419 VAL HIS MET LYS GLN GLU HIS TYR MET LYS GLY SER ASP SEQRES 3 A 419 GLY ALA PRO ASP THR GLY TYR LEU TRP HIS VAL PRO LEU SEQRES 4 A 419 THR PHE ILE THR SER LYS SER ASP MET VAL HIS ARG PHE SEQRES 5 A 419 LEU LEU LYS THR LYS THR ASP VAL LEU ILE LEU PRO GLU SEQRES 6 A 419 GLU VAL GLU TRP ILE LYS PHE ASN VAL GLY MET ASN GLY SEQRES 7 A 419 TYR TYR ILE VAL HIS TYR GLU ASP ASP GLY TRP ASP SER SEQRES 8 A 419 LEU THR GLY LEU LEU LYS GLY THR HIS THR ALA VAL SER SEQRES 9 A 419 SER ASN ASP ARG ALA SER LEU ILE ASN ASN ALA PHE GLN SEQRES 10 A 419 LEU VAL SER ILE GLY LYS LEU SER ILE GLU LYS ALA LEU SEQRES 11 A 419 ASP LEU SER LEU TYR LEU LYS HIS GLU THR GLU ILE MET SEQRES 12 A 419 PRO VAL PHE GLN GLY LEU ASN GLU LEU ILE PRO MET TYR SEQRES 13 A 419 LYS LEU MET GLU LYS ARG ASP MET ASN GLU VAL GLU THR SEQRES 14 A 419 GLN PHE LYS ALA PHE LEU ILE ARG LEU LEU ARG ASP LEU SEQRES 15 A 419 ILE ASP LYS GLN THR TRP THR ASP GLU GLY SER VAL SER SEQRES 16 A 419 GLU ARG MET LEU ARG SER GLN LEU LEU LEU LEU ALA CYS SEQRES 17 A 419 VAL HIS ASN TYR GLN PRO CYS VAL GLN ARG ALA GLU GLY SEQRES 18 A 419 TYR PHE ARG LYS TRP LYS GLU SER ASN GLY ASN LEU SER SEQRES 19 A 419 LEU PRO VAL ASP VAL THR LEU ALA VAL PHE ALA VAL GLY SEQRES 20 A 419 ALA GLN SER THR GLU GLY TRP ASP PHE LEU TYR SER LYS SEQRES 21 A 419 TYR GLN PHE SER LEU SER SER THR GLU LYS SER GLN ILE SEQRES 22 A 419 GLU PHE ALA LEU CYS ARG THR GLN ASN LYS GLU LYS LEU SEQRES 23 A 419 GLN TRP LEU LEU ASP GLU SER PHE LYS GLY ASP LYS ILE SEQRES 24 A 419 LYS THR GLN GLU PHE PRO GLN ILE LEU THR LEU ILE GLY SEQRES 25 A 419 ARG ASN PRO VAL GLY TYR PRO LEU ALA TRP GLN PHE LEU SEQRES 26 A 419 ARG LYS ASN TRP ASN LYS LEU VAL GLN LYS PHE GLU LEU SEQRES 27 A 419 GLY SER SER SER ILE ALA HIS MET VAL MET GLY THR THR SEQRES 28 A 419 ASN GLN PHE SER THR ARG THR ARG LEU GLU GLU VAL LYS SEQRES 29 A 419 GLY PHE PHE SER SER LEU LYS GLU ASN GLY SER GLN LEU SEQRES 30 A 419 ARG CYS VAL GLN GLN THR ILE GLU THR ILE GLU GLU ASN SEQRES 31 A 419 ILE GLY TRP MET ASP LYS ASN PHE ASP LYS ILE ARG VAL SEQRES 32 A 419 TRP LEU GLN SER GLU LYS LEU GLU ARG MET HIS HIS HIS SEQRES 33 A 419 HIS HIS HIS HET EDO A 1 4 HET EDO A 2 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 HOH *145(H2 O) HELIX 1 1 TYR A 612 HIS A 628 1 17 HELIX 2 2 THR A 629 VAL A 631 5 3 HELIX 3 3 SER A 632 ILE A 649 1 18 HELIX 4 4 SER A 653 LEU A 662 1 10 HELIX 5 5 TYR A 663 GLU A 667 5 5 HELIX 6 6 GLU A 669 GLU A 688 1 20 HELIX 7 7 MET A 692 GLN A 714 1 23 HELIX 8 8 SER A 721 HIS A 738 1 18 HELIX 9 9 TYR A 740 SER A 757 1 18 HELIX 10 10 PRO A 764 ASP A 766 5 3 HELIX 11 11 VAL A 767 ALA A 776 1 10 HELIX 12 12 SER A 778 SER A 792 1 15 HELIX 13 13 SER A 794 CYS A 806 1 13 HELIX 14 14 ASN A 810 GLY A 824 1 15 HELIX 15 15 LYS A 828 GLN A 830 5 3 HELIX 16 16 GLU A 831 ARG A 841 1 11 HELIX 17 17 GLY A 845 GLU A 865 1 21 HELIX 18 18 SER A 868 THR A 878 1 11 HELIX 19 19 THR A 884 SER A 897 1 14 HELIX 20 20 LEU A 905 HIS A 942 1 38 HELIX 21 21 HIS A 943 HIS A 947 5 5 SHEET 1 A 4 THR A 586 ILE A 590 0 SHEET 2 A 4 ASN A 541 TYR A 549 -1 N MET A 544 O ASP A 587 SHEET 3 A 4 PHE A 530 ARG A 538 -1 N THR A 536 O HIS A 543 SHEET 4 A 4 ILE A 609 HIS A 611 1 O HIS A 611 N ILE A 533 SHEET 1 B 3 HIS A 578 LEU A 582 0 SHEET 2 B 3 VAL A 565 THR A 571 -1 N VAL A 565 O LEU A 582 SHEET 3 B 3 ILE A 598 VAL A 602 -1 O ASN A 601 N THR A 568 SSBOND 1 CYS A 736 CYS A 743 1555 1555 2.08 SITE 1 AC1 2 ASN A 918 TRP A 921 SITE 1 AC2 5 ASP A 659 TRP A 932 SER A 935 GLU A 936 SITE 2 AC2 5 GLU A 939 CRYST1 63.840 67.310 65.920 90.00 110.25 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015664 0.000000 0.005779 0.00000 SCALE2 0.000000 0.014857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016169 0.00000