PDB Short entry for 3RK2 HEADER MEMBRANE PROTEIN/EXOCYTOSIS 17-APR-11 3RK2 TITLE TRUNCATED SNARE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: VESICLE-ASSOCIATED MEMBRANE PROTEIN 2; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: UNP RESIDUES 28-60; COMPND 5 SYNONYM: VAMP-2, SYNAPTOBREVIN-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SYNTAXIN-1A; COMPND 9 CHAIN: B, F; COMPND 10 FRAGMENT: UNP RESIDUES 191-253; COMPND 11 SYNONYM: NEURON-SPECIFIC ANTIGEN HPC-1, SYNAPTOTAGMIN-ASSOCIATED 35 COMPND 12 KDA PROTEIN, P35A; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: SYNAPTOSOMAL-ASSOCIATED PROTEIN 25; COMPND 16 CHAIN: C, G; COMPND 17 FRAGMENT: UNP RESIDUES 7-82; COMPND 18 SYNONYM: SNAP-25, SUPER PROTEIN, SUP, SYNAPTOSOMAL-ASSOCIATED 25 KDA COMPND 19 PROTEIN; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: SYNAPTOSOMAL-ASSOCIATED PROTEIN 25; COMPND 23 CHAIN: D, H; COMPND 24 FRAGMENT: UNP RESIDUES 141-203; COMPND 25 SYNONYM: SNAP-25, SUPER PROTEIN, SUP, SYNAPTOSOMAL-ASSOCIATED 25 KDA COMPND 26 PROTEIN; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VAMP2, SYB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: STX1A, SAP; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: SNAP25, SNAP; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: SNAP25, SNAP; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SNARE PROTEINS, MEMBRANE FUSION, MEMBRANE PROTEIN-EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.KUEMMEL,K.M.REINISCH REVDAT 3 13-SEP-23 3RK2 1 REMARK SEQADV LINK REVDAT 2 24-AUG-11 3RK2 1 JRNL REVDAT 1 27-JUL-11 3RK2 0 JRNL AUTH D.KUMMEL,S.S.KRISHNAKUMAR,D.T.RADOFF,F.LI,C.G.GIRAUDO, JRNL AUTH 2 F.PINCET,J.E.ROTHMAN,K.M.REINISCH JRNL TITL COMPLEXIN CROSS-LINKS PREFUSION SNARES INTO A ZIGZAG ARRAY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 927 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21785414 JRNL DOI 10.1038/NSMB.2101 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 20117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1078 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.03000 REMARK 3 B22 (A**2) : -0.88000 REMARK 3 B33 (A**2) : -5.50000 REMARK 3 B12 (A**2) : 0.45000 REMARK 3 B13 (A**2) : -0.47000 REMARK 3 B23 (A**2) : 1.54000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.432 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.529 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3687 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4951 ; 1.582 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ; 5.090 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;37.812 ;26.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 737 ;17.182 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.064 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2788 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2312 ; 0.789 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3694 ; 1.421 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1375 ; 2.834 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1253 ; 4.502 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 29 A 60 2 REMARK 3 1 E 29 E 60 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 119 ; 0.080 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 112 ; 0.440 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 119 ; 0.530 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 112 ; 0.710 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 190 B 248 2 REMARK 3 1 F 190 F 248 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 B (A): 232 ; 0.030 ; 0.050 REMARK 3 MEDIUM POSITIONAL 2 B (A): 215 ; 0.040 ; 0.500 REMARK 3 TIGHT THERMAL 2 B (A**2): 232 ; 0.210 ; 0.500 REMARK 3 MEDIUM THERMAL 2 B (A**2): 215 ; 0.220 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : C G REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 11 C 79 2 REMARK 3 1 G 11 G 79 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 C (A): 271 ; 0.030 ; 0.050 REMARK 3 MEDIUM POSITIONAL 3 C (A): 267 ; 0.040 ; 0.500 REMARK 3 TIGHT THERMAL 3 C (A**2): 271 ; 0.150 ; 0.500 REMARK 3 MEDIUM THERMAL 3 C (A**2): 267 ; 0.300 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : D H REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 D 139 D 203 2 REMARK 3 1 H 139 H 203 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 D (A): 261 ; 0.070 ; 0.050 REMARK 3 MEDIUM POSITIONAL 4 D (A): 248 ; 0.200 ; 0.500 REMARK 3 TIGHT THERMAL 4 D (A**2): 261 ; 0.800 ; 0.500 REMARK 3 MEDIUM THERMAL 4 D (A**2): 248 ; 1.030 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4761 -10.7158 -6.3169 REMARK 3 T TENSOR REMARK 3 T11: 0.5602 T22: 0.2065 REMARK 3 T33: 0.2971 T12: 0.1543 REMARK 3 T13: -0.0240 T23: 0.0762 REMARK 3 L TENSOR REMARK 3 L11: 7.7966 L22: 0.7186 REMARK 3 L33: 40.3430 L12: 2.0701 REMARK 3 L13: 10.9609 L23: 4.2837 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: 0.0602 S13: -0.0420 REMARK 3 S21: 0.0936 S22: 0.1283 S23: 0.0310 REMARK 3 S31: -1.6023 S32: -0.2544 S33: -0.1979 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7167 -18.0096 -26.8680 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.4156 REMARK 3 T33: 0.4160 T12: 0.0232 REMARK 3 T13: -0.0120 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.7689 L22: 9.2190 REMARK 3 L33: 21.4082 L12: -1.0540 REMARK 3 L13: -1.0151 L23: 5.7244 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.3231 S13: -0.2855 REMARK 3 S21: -0.3669 S22: -0.6757 S23: 0.3450 REMARK 3 S31: 0.3943 S32: -1.9936 S33: 0.6073 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 190 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4504 -17.1321 2.8745 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.1758 REMARK 3 T33: 0.2502 T12: 0.0863 REMARK 3 T13: -0.0384 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 2.0357 L22: 3.8606 REMARK 3 L33: 37.6615 L12: 0.6651 REMARK 3 L13: -2.8286 L23: 9.1403 REMARK 3 S TENSOR REMARK 3 S11: 0.3450 S12: 0.1609 S13: 0.2149 REMARK 3 S21: 0.1288 S22: 0.2782 S23: -0.0972 REMARK 3 S31: -0.8311 S32: -0.4788 S33: -0.6232 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 217 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4258 -28.8226 -38.4173 REMARK 3 T TENSOR REMARK 3 T11: 0.6012 T22: 0.2012 REMARK 3 T33: 0.3415 T12: 0.0172 REMARK 3 T13: 0.0084 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.2083 L22: 0.2656 REMARK 3 L33: 31.5000 L12: -0.4142 REMARK 3 L13: -3.2758 L23: 2.5460 REMARK 3 S TENSOR REMARK 3 S11: -0.1754 S12: -0.1640 S13: -0.3125 REMARK 3 S21: -0.0222 S22: -0.0295 S23: 0.0782 REMARK 3 S31: 1.1679 S32: -0.0413 S33: 0.2049 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 47 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1132 -23.0775 6.7328 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.1083 REMARK 3 T33: 0.2161 T12: 0.0359 REMARK 3 T13: -0.0853 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 1.5601 L22: 1.0104 REMARK 3 L33: 28.9344 L12: -0.4962 REMARK 3 L13: -5.9381 L23: 2.3379 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: -0.1204 S13: 0.0980 REMARK 3 S21: 0.2695 S22: -0.0018 S23: -0.1171 REMARK 3 S31: 0.4486 S32: 0.5251 S33: 0.0715 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 48 C 83 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6566 -20.9135 -50.0189 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.1945 REMARK 3 T33: 0.2015 T12: -0.0152 REMARK 3 T13: -0.0123 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.6653 L22: 0.6282 REMARK 3 L33: 23.4666 L12: -1.0000 REMARK 3 L13: 6.7603 L23: -1.6009 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: 0.3148 S13: -0.0439 REMARK 3 S21: -0.1378 S22: 0.0160 S23: 0.0070 REMARK 3 S31: -0.1531 S32: 1.0932 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 139 D 171 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4197 -16.6524 -5.3456 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.1562 REMARK 3 T33: 0.2112 T12: 0.0243 REMARK 3 T13: -0.0501 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 1.6918 L22: 1.6447 REMARK 3 L33: 27.8809 L12: -0.6742 REMARK 3 L13: 5.1865 L23: -5.1359 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: 0.0818 S13: 0.1242 REMARK 3 S21: 0.0684 S22: -0.1981 S23: -0.2223 REMARK 3 S31: -0.2186 S32: 0.6495 S33: 0.2502 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 172 D 203 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2181 -18.6954 -49.9157 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.1387 REMARK 3 T33: 0.2366 T12: -0.0085 REMARK 3 T13: -0.0907 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 5.5212 L22: 2.6659 REMARK 3 L33: 36.1877 L12: 2.7746 REMARK 3 L13: 12.6670 L23: 7.4748 REMARK 3 S TENSOR REMARK 3 S11: 0.0716 S12: -0.1780 S13: -0.4489 REMARK 3 S21: -0.2869 S22: 0.1554 S23: 0.1104 REMARK 3 S31: -0.3815 S32: -0.5282 S33: -0.2270 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 29 E 46 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8549 -45.6827 0.1852 REMARK 3 T TENSOR REMARK 3 T11: 0.6000 T22: 0.1958 REMARK 3 T33: 0.3050 T12: -0.0872 REMARK 3 T13: 0.0334 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 6.5022 L22: 1.3719 REMARK 3 L33: 32.1084 L12: -2.9633 REMARK 3 L13: -11.5852 L23: 4.9430 REMARK 3 S TENSOR REMARK 3 S11: 0.1956 S12: 0.0593 S13: 0.0474 REMARK 3 S21: -0.1888 S22: 0.0038 S23: -0.0070 REMARK 3 S31: 0.6915 S32: -0.2159 S33: -0.1994 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 47 E 60 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1144 -37.7351 22.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.0175 T22: 0.3724 REMARK 3 T33: 0.4147 T12: 0.0190 REMARK 3 T13: -0.0456 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 6.4092 L22: 12.6516 REMARK 3 L33: 30.1029 L12: 1.0289 REMARK 3 L13: 0.5818 L23: 7.4747 REMARK 3 S TENSOR REMARK 3 S11: -0.1790 S12: 0.2095 S13: 0.3568 REMARK 3 S21: 0.1360 S22: -0.7398 S23: 0.7650 REMARK 3 S31: -0.1059 S32: -1.7902 S33: 0.9188 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 190 F 218 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2750 -37.9710 -6.2387 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.1097 REMARK 3 T33: 0.2297 T12: -0.0609 REMARK 3 T13: 0.0211 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 1.7393 L22: 2.5296 REMARK 3 L33: 26.2691 L12: -0.2602 REMARK 3 L13: 0.3322 L23: 4.8387 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: -0.0574 S13: -0.1333 REMARK 3 S21: -0.2201 S22: 0.0273 S23: -0.0445 REMARK 3 S31: 0.5663 S32: -0.5859 S33: -0.0255 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 219 F 248 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3752 -26.6774 35.0653 REMARK 3 T TENSOR REMARK 3 T11: 0.5970 T22: 0.1444 REMARK 3 T33: 0.3485 T12: -0.0302 REMARK 3 T13: 0.0483 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 2.3964 L22: 0.1054 REMARK 3 L33: 24.7680 L12: -0.1799 REMARK 3 L13: 2.3946 L23: 0.8207 REMARK 3 S TENSOR REMARK 3 S11: -0.2649 S12: 0.1508 S13: 0.4225 REMARK 3 S21: 0.0835 S22: -0.0938 S23: 0.0470 REMARK 3 S31: -1.5230 S32: -0.4359 S33: 0.3587 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 7 G 46 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5200 -32.4103 -12.1321 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.1291 REMARK 3 T33: 0.1877 T12: 0.0091 REMARK 3 T13: 0.0538 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 1.1878 L22: 1.1697 REMARK 3 L33: 25.3180 L12: 0.4161 REMARK 3 L13: 4.3822 L23: 1.9344 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: 0.1224 S13: -0.1095 REMARK 3 S21: -0.3244 S22: 0.0345 S23: -0.0905 REMARK 3 S31: -0.7687 S32: 0.2270 S33: 0.0422 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 47 G 83 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2973 -34.6382 44.7935 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.1417 REMARK 3 T33: 0.1866 T12: -0.0199 REMARK 3 T13: -0.0310 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.9580 L22: 1.3624 REMARK 3 L33: 34.9613 L12: 0.9405 REMARK 3 L13: -7.4719 L23: -2.4614 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: -0.3002 S13: -0.0309 REMARK 3 S21: 0.2617 S22: -0.0834 S23: 0.0356 REMARK 3 S31: -0.0089 S32: 1.1127 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 139 H 171 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3470 -38.9225 0.5489 REMARK 3 T TENSOR REMARK 3 T11: 0.1348 T22: 0.1374 REMARK 3 T33: 0.2442 T12: 0.0528 REMARK 3 T13: 0.0205 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 2.0434 L22: 1.1184 REMARK 3 L33: 29.7004 L12: 1.3739 REMARK 3 L13: -6.5283 L23: -5.6023 REMARK 3 S TENSOR REMARK 3 S11: -0.2287 S12: -0.1060 S13: -0.1593 REMARK 3 S21: -0.1969 S22: -0.1127 S23: -0.1644 REMARK 3 S31: 1.0090 S32: 0.4943 S33: 0.3413 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 172 H 203 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4469 -36.7315 45.2879 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.1257 REMARK 3 T33: 0.2183 T12: 0.0070 REMARK 3 T13: 0.0064 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.1306 L22: 3.2197 REMARK 3 L33: 25.2369 L12: -1.4310 REMARK 3 L13: -8.2919 L23: 5.3930 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: 0.1869 S13: 0.1990 REMARK 3 S21: 0.2219 S22: -0.0837 S23: 0.3215 REMARK 3 S31: 0.0398 S32: -0.4825 S33: 0.1103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMETER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20205 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KIL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CALCIUM ACETATE, 27% 2-METHYL REMARK 280 -2,4-PENTANEDIOL (MPD), 0.1 M SODIUM CACODYLATE PH 6.5-7.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 ASN A 29 REMARK 465 ARG A 30 REMARK 465 GLY B 189 REMARK 465 SER B 249 REMARK 465 ASP B 250 REMARK 465 THR B 251 REMARK 465 LYS B 252 REMARK 465 LYS B 253 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 HIS C 5 REMARK 465 MET C 6 REMARK 465 GLY E 24 REMARK 465 PRO E 25 REMARK 465 LEU E 26 REMARK 465 GLY E 27 REMARK 465 SER E 28 REMARK 465 GLY F 189 REMARK 465 SER F 249 REMARK 465 ASP F 250 REMARK 465 THR F 251 REMARK 465 LYS F 252 REMARK 465 LYS F 253 REMARK 465 GLY G 3 REMARK 465 SER G 4 REMARK 465 HIS G 5 REMARK 465 MET G 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 LEU C 81 CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 204 CG CD CE NZ REMARK 480 ARG B 232 CD NE CZ NH1 NH2 REMARK 480 GLU B 238 CG CD OE1 OE2 REMARK 480 ARG B 246 CG CD NE CZ NH1 NH2 REMARK 480 ARG C 8 CG CD NE CZ NH1 NH2 REMARK 480 GLU C 10 CG CD OE1 OE2 REMARK 480 GLU C 62 CD OE1 OE2 REMARK 480 LYS D 189 CD CE NZ REMARK 480 GLN D 197 CG CD OE1 NE2 REMARK 480 ARG E 31 CG CD NE CZ NH1 NH2 REMARK 480 ARG E 47 CG CD NE CZ NH1 NH2 REMARK 480 LYS F 204 CG CD CE NZ REMARK 480 ARG F 232 CG CD NE CZ NH1 NH2 REMARK 480 GLU F 238 CG CD OE1 OE2 REMARK 480 HIS F 239 CG ND1 CD2 CE1 NE2 REMARK 480 GLU F 245 CD OE1 OE2 REMARK 480 ARG F 246 CG CD NE CZ NH1 NH2 REMARK 480 MET G 7 CG SD CE REMARK 480 ARG G 8 CG CD NE CZ NH1 NH2 REMARK 480 GLU G 62 CG CD OE1 OE2 REMARK 480 LYS G 76 CG CD CE NZ REMARK 480 MET H 202 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG E 47 OE2 GLU F 211 1.88 REMARK 500 NH2 ARG A 47 OE2 GLU B 211 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU C 10 SD MET D 202 1556 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 51 CB ASP A 51 CG 0.141 REMARK 500 GLU C 10 CB GLU C 10 CG -0.153 REMARK 500 GLU C 62 CG GLU C 62 CD -0.374 REMARK 500 GLN D 197 CB GLN D 197 CG -0.240 REMARK 500 ARG E 31 CB ARG E 31 CG -0.187 REMARK 500 GLU F 245 CG GLU F 245 CD 0.234 REMARK 500 GLU G 62 CB GLU G 62 CG -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU C 62 CB - CG - CD ANGL. DEV. = 20.4 DEGREES REMARK 500 GLU C 62 CG - CD - OE1 ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG E 31 CA - CB - CG ANGL. DEV. = 23.8 DEGREES REMARK 500 MET G 7 CB - CG - SD ANGL. DEV. = -21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 231 OD2 REMARK 620 2 ASP B 231 OD1 47.2 REMARK 620 3 HOH C 92 O 75.4 101.3 REMARK 620 4 GLU G 13 OE2 98.1 69.1 170.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 4 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 228 OE2 REMARK 620 2 ASP B 231 OD1 74.8 REMARK 620 3 GLU G 13 OE2 89.4 69.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 84 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RK3 RELATED DB: PDB DBREF 3RK2 A 28 60 UNP P63027 VAMP2_HUMAN 28 60 DBREF 3RK2 B 191 253 UNP P32851 STX1A_RAT 191 253 DBREF 3RK2 C 7 82 UNP P60880 SNP25_HUMAN 7 82 DBREF 3RK2 D 141 203 UNP P60880 SNP25_HUMAN 141 203 DBREF 3RK2 E 28 60 UNP P63027 VAMP2_HUMAN 28 60 DBREF 3RK2 F 191 253 UNP P32851 STX1A_RAT 191 253 DBREF 3RK2 G 7 82 UNP P60880 SNP25_HUMAN 7 82 DBREF 3RK2 H 141 203 UNP P60880 SNP25_HUMAN 141 203 SEQADV 3RK2 GLY A 24 UNP P63027 EXPRESSION TAG SEQADV 3RK2 PRO A 25 UNP P63027 EXPRESSION TAG SEQADV 3RK2 LEU A 26 UNP P63027 EXPRESSION TAG SEQADV 3RK2 GLY A 27 UNP P63027 EXPRESSION TAG SEQADV 3RK2 GLY B 189 UNP P32851 EXPRESSION TAG SEQADV 3RK2 SER B 190 UNP P32851 EXPRESSION TAG SEQADV 3RK2 GLY C 3 UNP P60880 EXPRESSION TAG SEQADV 3RK2 SER C 4 UNP P60880 EXPRESSION TAG SEQADV 3RK2 HIS C 5 UNP P60880 EXPRESSION TAG SEQADV 3RK2 MET C 6 UNP P60880 EXPRESSION TAG SEQADV 3RK2 TRP C 83 UNP P60880 EXPRESSION TAG SEQADV 3RK2 GLY D 139 UNP P60880 EXPRESSION TAG SEQADV 3RK2 SER D 140 UNP P60880 EXPRESSION TAG SEQADV 3RK2 GLY E 24 UNP P63027 EXPRESSION TAG SEQADV 3RK2 PRO E 25 UNP P63027 EXPRESSION TAG SEQADV 3RK2 LEU E 26 UNP P63027 EXPRESSION TAG SEQADV 3RK2 GLY E 27 UNP P63027 EXPRESSION TAG SEQADV 3RK2 GLY F 189 UNP P32851 EXPRESSION TAG SEQADV 3RK2 SER F 190 UNP P32851 EXPRESSION TAG SEQADV 3RK2 GLY G 3 UNP P60880 EXPRESSION TAG SEQADV 3RK2 SER G 4 UNP P60880 EXPRESSION TAG SEQADV 3RK2 HIS G 5 UNP P60880 EXPRESSION TAG SEQADV 3RK2 MET G 6 UNP P60880 EXPRESSION TAG SEQADV 3RK2 TRP G 83 UNP P60880 EXPRESSION TAG SEQADV 3RK2 GLY H 139 UNP P60880 EXPRESSION TAG SEQADV 3RK2 SER H 140 UNP P60880 EXPRESSION TAG SEQRES 1 A 37 GLY PRO LEU GLY SER ASN ARG ARG LEU GLN GLN THR GLN SEQRES 2 A 37 ALA GLN VAL ASP GLU VAL VAL ASP ILE MET ARG VAL ASN SEQRES 3 A 37 VAL ASP LYS VAL LEU GLU ARG ASP GLN LYS LEU SEQRES 1 B 65 GLY SER ALA LEU SER GLU ILE GLU THR ARG HIS SER GLU SEQRES 2 B 65 ILE ILE LYS LEU GLU ASN SER ILE ARG GLU LEU HIS ASP SEQRES 3 B 65 MET PHE MET ASP MET ALA MET LEU VAL GLU SER GLN GLY SEQRES 4 B 65 GLU MET ILE ASP ARG ILE GLU TYR ASN VAL GLU HIS ALA SEQRES 5 B 65 VAL ASP TYR VAL GLU ARG ALA VAL SER ASP THR LYS LYS SEQRES 1 C 81 GLY SER HIS MET MET ARG ASN GLU LEU GLU GLU MET GLN SEQRES 2 C 81 ARG ARG ALA ASP GLN LEU ALA ASP GLU SER LEU GLU SER SEQRES 3 C 81 THR ARG ARG MET LEU GLN LEU VAL GLU GLU SER LYS ASP SEQRES 4 C 81 ALA GLY ILE ARG THR LEU VAL MET LEU ASP GLU GLN GLY SEQRES 5 C 81 GLU GLN LEU ASP ARG VAL GLU GLU GLY MET ASN HIS ILE SEQRES 6 C 81 ASN GLN ASP MET LYS GLU ALA GLU LYS ASN LEU LYS ASP SEQRES 7 C 81 LEU GLY TRP SEQRES 1 D 65 GLY SER ALA ARG GLU ASN GLU MET ASP GLU ASN LEU GLU SEQRES 2 D 65 GLN VAL SER GLY ILE ILE GLY ASN LEU ARG HIS MET ALA SEQRES 3 D 65 LEU ASP MET GLY ASN GLU ILE ASP THR GLN ASN ARG GLN SEQRES 4 D 65 ILE ASP ARG ILE MET GLU LYS ALA ASP SER ASN LYS THR SEQRES 5 D 65 ARG ILE ASP GLU ALA ASN GLN ARG ALA THR LYS MET LEU SEQRES 1 E 37 GLY PRO LEU GLY SER ASN ARG ARG LEU GLN GLN THR GLN SEQRES 2 E 37 ALA GLN VAL ASP GLU VAL VAL ASP ILE MET ARG VAL ASN SEQRES 3 E 37 VAL ASP LYS VAL LEU GLU ARG ASP GLN LYS LEU SEQRES 1 F 65 GLY SER ALA LEU SER GLU ILE GLU THR ARG HIS SER GLU SEQRES 2 F 65 ILE ILE LYS LEU GLU ASN SER ILE ARG GLU LEU HIS ASP SEQRES 3 F 65 MET PHE MET ASP MET ALA MET LEU VAL GLU SER GLN GLY SEQRES 4 F 65 GLU MET ILE ASP ARG ILE GLU TYR ASN VAL GLU HIS ALA SEQRES 5 F 65 VAL ASP TYR VAL GLU ARG ALA VAL SER ASP THR LYS LYS SEQRES 1 G 81 GLY SER HIS MET MET ARG ASN GLU LEU GLU GLU MET GLN SEQRES 2 G 81 ARG ARG ALA ASP GLN LEU ALA ASP GLU SER LEU GLU SER SEQRES 3 G 81 THR ARG ARG MET LEU GLN LEU VAL GLU GLU SER LYS ASP SEQRES 4 G 81 ALA GLY ILE ARG THR LEU VAL MET LEU ASP GLU GLN GLY SEQRES 5 G 81 GLU GLN LEU ASP ARG VAL GLU GLU GLY MET ASN HIS ILE SEQRES 6 G 81 ASN GLN ASP MET LYS GLU ALA GLU LYS ASN LEU LYS ASP SEQRES 7 G 81 LEU GLY TRP SEQRES 1 H 65 GLY SER ALA ARG GLU ASN GLU MET ASP GLU ASN LEU GLU SEQRES 2 H 65 GLN VAL SER GLY ILE ILE GLY ASN LEU ARG HIS MET ALA SEQRES 3 H 65 LEU ASP MET GLY ASN GLU ILE ASP THR GLN ASN ARG GLN SEQRES 4 H 65 ILE ASP ARG ILE MET GLU LYS ALA ASP SER ASN LYS THR SEQRES 5 H 65 ARG ILE ASP GLU ALA ASN GLN ARG ALA THR LYS MET LEU HET CA B 1 1 HET CA B 4 1 HET CA C 2 1 HET CA C 84 1 HETNAM CA CALCIUM ION FORMUL 9 CA 4(CA 2+) FORMUL 13 HOH *37(H2 O) HELIX 1 1 ARG A 31 LEU A 60 1 30 HELIX 2 2 SER B 190 VAL B 248 1 59 HELIX 3 3 MET C 7 LEU C 81 1 75 HELIX 4 4 GLY D 139 LYS D 201 1 63 HELIX 5 5 ASN E 29 LEU E 60 1 32 HELIX 6 6 SER F 190 VAL F 248 1 59 HELIX 7 7 MET G 7 LEU G 81 1 75 HELIX 8 8 GLY H 139 LYS H 201 1 63 LINK CA CA B 1 OD2 ASP B 231 1555 1555 2.66 LINK CA CA B 1 OD1 ASP B 231 1555 1555 2.68 LINK CA CA B 1 O HOH C 92 1555 1555 2.66 LINK CA CA B 1 OE2 GLU G 13 1555 1555 2.64 LINK CA CA B 4 OE2 GLU B 228 1555 1555 2.86 LINK CA CA B 4 OD1 ASP B 231 1555 1555 2.59 LINK CA CA B 4 OE2 GLU G 13 1555 1555 2.72 LINK CA CA C 2 OE2 GLU C 13 1555 1555 2.70 LINK OE2 GLU C 13 CA CA C 84 1555 1555 2.60 SITE 1 AC1 4 ASP B 231 GLU C 52 HOH C 92 GLU G 13 SITE 1 AC2 4 GLU B 228 ASP B 231 GLU G 10 GLU G 13 SITE 1 AC3 3 GLU C 13 ASP F 231 GLU G 52 SITE 1 AC4 3 GLU C 13 GLU F 228 ASP F 231 CRYST1 27.627 39.769 102.275 83.38 89.94 89.87 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036196 -0.000082 -0.000029 0.00000 SCALE2 0.000000 0.025145 -0.002918 0.00000 SCALE3 0.000000 0.000000 0.009843 0.00000