PDB Short entry for 3RQ5 HEADER LYASE/LYASE SUBSTRATE 27-APR-11 3RQ5 TITLE CRYSTAL STRUCTURE OF ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE TITLE 2 FROM BACILLUS SUBTILIS CO-CRYSTALLIZED WITH ATP/MG2+ AND SOAKED WITH TITLE 3 COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.93; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BSU38720, YXKO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIPL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, LYASE, LYASE-LYASE KEYWDS 3 SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SHUMILIN,M.CYMBOROWSKI,A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 5 13-SEP-23 3RQ5 1 REMARK REVDAT 4 13-APR-22 3RQ5 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 09-JAN-13 3RQ5 1 JRNL REVDAT 2 21-SEP-11 3RQ5 1 REMARK REVDAT 1 27-JUL-11 3RQ5 0 JRNL AUTH I.A.SHUMILIN,M.CYMBOROWSKI,O.CHERTIHIN,K.N.JHA,J.C.HERR, JRNL AUTH 2 S.A.LESLEY,A.JOACHIMIAK,W.MINOR JRNL TITL IDENTIFICATION OF UNKNOWN PROTEIN FUNCTION USING METABOLITE JRNL TITL 2 COCKTAIL SCREENING. JRNL REF STRUCTURE V. 20 1715 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22940582 JRNL DOI 10.1016/J.STR.2012.07.016 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2749 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2059 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : -1.10000 REMARK 3 B33 (A**2) : 2.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2152 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1414 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2940 ; 1.571 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3467 ; 4.183 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 6.250 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;33.369 ;24.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;10.687 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.223 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2357 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 396 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 0.890 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 546 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2154 ; 1.620 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 810 ; 2.658 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 786 ; 4.333 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): -44.5910 -14.4240 -40.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.1222 REMARK 3 T33: 0.0666 T12: -0.0125 REMARK 3 T13: -0.0247 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 7.0766 L22: 6.2676 REMARK 3 L33: 2.2040 L12: -5.7122 REMARK 3 L13: 2.2018 L23: -1.7976 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: 0.2834 S13: 0.1337 REMARK 3 S21: -0.2341 S22: -0.0809 S23: -0.0602 REMARK 3 S31: -0.0241 S32: -0.0035 S33: 0.0898 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -40.7740 -24.3690 -14.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.0889 REMARK 3 T33: 0.0267 T12: -0.0165 REMARK 3 T13: -0.0253 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.7845 L22: 1.4708 REMARK 3 L33: 0.8856 L12: -0.3051 REMARK 3 L13: -0.1593 L23: -0.0450 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: -0.1002 S13: 0.0557 REMARK 3 S21: 0.1702 S22: -0.0017 S23: -0.0601 REMARK 3 S31: -0.1173 S32: 0.1043 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): -54.5090 -10.0340 -24.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.0486 REMARK 3 T33: 0.0931 T12: 0.0292 REMARK 3 T13: -0.0274 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.4800 L22: 2.6893 REMARK 3 L33: 1.5389 L12: 0.1808 REMARK 3 L13: -0.2533 L23: -0.1675 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.0239 S13: 0.1477 REMARK 3 S21: 0.0037 S22: 0.0210 S23: 0.3556 REMARK 3 S31: -0.1889 S32: -0.1992 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): -47.2780 -26.1310 -33.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.0877 REMARK 3 T33: 0.0382 T12: -0.0018 REMARK 3 T13: -0.0244 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.8938 L22: 0.5024 REMARK 3 L33: 0.5206 L12: 0.1869 REMARK 3 L13: -0.1386 L23: -0.0180 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.0976 S13: 0.0700 REMARK 3 S21: -0.1056 S22: -0.0145 S23: 0.0183 REMARK 3 S31: -0.0489 S32: -0.0090 S33: 0.0439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3RQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.8460 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : 0.61000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.488 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KYH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.005 M ATP, 0.18 M MAGNESIUM CLORIDE, REMARK 280 13.5%(V/V) PEG 400, 10%(V/V) GLYCEROL, 0.09 M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.88250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.88250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 84.74900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.88250 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.88250 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 84.74900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.88250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.88250 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 84.74900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.88250 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.88250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 84.74900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.88250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.88250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 84.74900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.88250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.88250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 84.74900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.88250 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.88250 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 84.74900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.88250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.88250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 84.74900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -91.76500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -91.76500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -91.76500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -91.76500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 20 REMARK 465 GLU A 21 REMARK 465 SER A 22 REMARK 465 HIS A 23 REMARK 465 LYS A 24 REMARK 465 GLY A 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 122 79.84 -104.29 REMARK 500 ALA A 129 -118.34 53.42 REMARK 500 LYS A 167 52.83 -145.38 REMARK 500 GLN A 189 70.46 46.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 COA A 277 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC102301 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1KYH RELATED DB: PDB REMARK 900 APO-PROTEIN REMARK 900 RELATED ID: 3RPZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE REMARK 900 FROM BACILLUS SUBTILIS CO-CRYSTALLIZED WITH ATP/MG2+ AND SOAKED REMARK 900 WITH NADPH REMARK 900 RELATED ID: 3RQ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE REMARK 900 FROM BACILLUS SUBTILIS SOAKED WITH ADP-RIBOSE REMARK 900 RELATED ID: 3RQ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE REMARK 900 FROM BACILLUS SUBTILIS SOAKED WITH P1,P5-DI(ADENOSINE-5') REMARK 900 PENTAPHOSPHATE REMARK 900 RELATED ID: 3RQH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE REMARK 900 FROM BACILLUS SUBTILIS IN COMPLEX WITH P1,P6-DI(ADENOSINE-5') REMARK 900 HEXAPHOSPHATE REMARK 900 RELATED ID: 3RQQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE REMARK 900 FROM BACILLUS SUBTILIS IN COMPLEX WITH P1,P3-DI(ADENOSINE-5') REMARK 900 TRIPHOSPHATE REMARK 900 RELATED ID: 3RQX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE REMARK 900 FROM BACILLUS SUBTILIS IN COMPLEX WITH P1,P4-DI(ADENOSINE-5') REMARK 900 TETRAPHOSPHATE DBREF 3RQ5 A 1 276 UNP P94368 YXKO_BACSU 1 276 SEQADV 3RQ5 SER A -2 UNP P94368 EXPRESSION TAG SEQADV 3RQ5 ASN A -1 UNP P94368 EXPRESSION TAG SEQADV 3RQ5 ALA A 0 UNP P94368 EXPRESSION TAG SEQRES 1 A 279 SER ASN ALA MET ASN VAL PRO PHE TRP THR GLU GLU HIS SEQRES 2 A 279 VAL ARG ALA THR LEU PRO GLU ARG ASP ALA GLU SER HIS SEQRES 3 A 279 LYS GLY THR TYR GLY THR ALA LEU LEU LEU ALA GLY SER SEQRES 4 A 279 ASP ASP MET PRO GLY ALA ALA LEU LEU ALA GLY LEU GLY SEQRES 5 A 279 ALA MET ARG SER GLY LEU GLY LYS LEU VAL ILE GLY THR SEQRES 6 A 279 SER GLU ASN VAL ILE PRO LEU ILE VAL PRO VAL LEU PRO SEQRES 7 A 279 GLU ALA THR TYR TRP ARG ASP GLY TRP LYS LYS ALA ALA SEQRES 8 A 279 ASP ALA GLN LEU GLU GLU THR TYR ARG ALA ILE ALA ILE SEQRES 9 A 279 GLY PRO GLY LEU PRO GLN THR GLU SER VAL GLN GLN ALA SEQRES 10 A 279 VAL ASP HIS VAL LEU THR ALA ASP CYS PRO VAL ILE LEU SEQRES 11 A 279 ASP ALA GLY ALA LEU ALA LYS ARG THR TYR PRO LYS ARG SEQRES 12 A 279 GLU GLY PRO VAL ILE LEU THR PRO HIS PRO GLY GLU PHE SEQRES 13 A 279 PHE ARG MET THR GLY VAL PRO VAL ASN GLU LEU GLN LYS SEQRES 14 A 279 LYS ARG ALA GLU TYR ALA LYS GLU TRP ALA ALA GLN LEU SEQRES 15 A 279 GLN THR VAL ILE VAL LEU LYS GLY ASN GLN THR VAL ILE SEQRES 16 A 279 ALA PHE PRO ASP GLY ASP CYS TRP LEU ASN PRO THR GLY SEQRES 17 A 279 ASN GLY ALA LEU ALA LYS GLY GLY THR GLY ASP THR LEU SEQRES 18 A 279 THR GLY MET ILE LEU GLY MET LEU CYS CYS HIS GLU ASP SEQRES 19 A 279 PRO LYS HIS ALA VAL LEU ASN ALA VAL TYR LEU HIS GLY SEQRES 20 A 279 ALA CYS ALA GLU LEU TRP THR ASP GLU HIS SER ALA HIS SEQRES 21 A 279 THR LEU LEU ALA HIS GLU LEU SER ASP ILE LEU PRO ARG SEQRES 22 A 279 VAL TRP LYS ARG PHE GLU HET COA A 277 31 HET GOL A 278 6 HET GOL A 279 6 HETNAM COA COENZYME A HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *169(H2 O) HELIX 1 1 THR A 7 LEU A 15 1 9 HELIX 2 2 PRO A 40 ARG A 52 1 13 HELIX 3 3 VAL A 66 VAL A 71 1 6 HELIX 4 4 ASP A 82 ALA A 87 1 6 HELIX 5 5 THR A 108 LEU A 119 1 12 HELIX 6 6 ALA A 129 LEU A 132 5 4 HELIX 7 7 HIS A 149 GLY A 158 1 10 HELIX 8 8 PRO A 160 GLN A 165 1 6 HELIX 9 9 LYS A 167 GLN A 180 1 14 HELIX 10 10 ASN A 206 ALA A 210 5 5 HELIX 11 11 GLY A 213 HIS A 229 1 17 HELIX 12 12 ASP A 231 THR A 251 1 21 HELIX 13 13 SER A 255 LEU A 260 5 6 HELIX 14 14 ALA A 261 PHE A 275 1 15 SHEET 1 A 9 THR A 78 TYR A 79 0 SHEET 2 A 9 LYS A 57 GLY A 61 1 N ILE A 60 O THR A 78 SHEET 3 A 9 THR A 29 LEU A 33 1 N LEU A 32 O GLY A 61 SHEET 4 A 9 ALA A 98 ILE A 101 1 O ALA A 100 N LEU A 33 SHEET 5 A 9 VAL A 125 LEU A 127 1 O ILE A 126 N ILE A 101 SHEET 6 A 9 VAL A 144 LEU A 146 1 O ILE A 145 N VAL A 125 SHEET 7 A 9 VAL A 182 LEU A 185 1 O VAL A 184 N LEU A 146 SHEET 8 A 9 VAL A 191 ALA A 193 -1 O ALA A 193 N ILE A 183 SHEET 9 A 9 CYS A 199 LEU A 201 -1 O TRP A 200 N ILE A 192 SITE 1 AC1 19 TYR A 27 THR A 29 GLY A 56 LYS A 57 SITE 2 AC1 19 HIS A 149 ALA A 210 GLY A 212 GLY A 213 SITE 3 AC1 19 THR A 214 GLY A 215 ASP A 216 HOH A 308 SITE 4 AC1 19 HOH A 324 HOH A 352 HOH A 364 HOH A 366 SITE 5 AC1 19 HOH A 427 HOH A 428 HOH A 429 SITE 1 AC2 6 ASP A 37 PRO A 40 PRO A 68 ARG A 81 SITE 2 AC2 6 HOH A 325 HOH A 390 SITE 1 AC3 5 TRP A 80 LEU A 92 GLU A 93 GLU A 94 SITE 2 AC3 5 TYR A 96 CRYST1 91.765 91.765 169.498 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005900 0.00000