PDB Short entry for 3RSS HEADER LYASE 02-MAY-11 3RSS TITLE CRYSTAL STRUCTURE OF TM0922, A FUSION OF A DOMAIN OF UNKNOWN FUNCTION TITLE 2 AND ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE FROM THERMOTOGA TITLE 3 MARITIMA SOAKED WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.93; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UNKNOWN PEPTIDE, PROBABLY FROM EXPRESSION HOST; COMPND 8 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0922, TM_0922; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMH1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 469008; SOURCE 14 STRAIN: BL21(DE3); SOURCE 15 OTHER_DETAILS: UNKNOWN PEPTIDE, PROBABLY FROM EXPRESSION HOST KEYWDS UNKNOWN FUNCTION, ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SHUMILIN,M.CYMBOROWSKI,S.A.LESLEY,W.MINOR REVDAT 5 13-SEP-23 3RSS 1 REMARK REVDAT 4 13-APR-22 3RSS 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 31-OCT-12 3RSS 1 JRNL REVDAT 2 19-SEP-12 3RSS 1 JRNL VERSN REVDAT 1 22-JUN-11 3RSS 0 JRNL AUTH I.A.SHUMILIN,M.CYMBOROWSKI,O.CHERTIHIN,K.N.JHA,J.C.HERR, JRNL AUTH 2 S.A.LESLEY,A.JOACHIMIAK,W.MINOR JRNL TITL IDENTIFICATION OF UNKNOWN PROTEIN FUNCTION USING METABOLITE JRNL TITL 2 COCKTAIL SCREENING. JRNL REF STRUCTURE V. 20 1715 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22940582 JRNL DOI 10.1016/J.STR.2012.07.016 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2145 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2957 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 1.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3937 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2651 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5336 ; 1.690 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6515 ; 4.191 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 500 ; 6.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;36.545 ;24.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 688 ;13.734 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4316 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 743 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2477 ; 1.059 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1032 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3997 ; 1.919 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1460 ; 3.153 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1339 ; 5.260 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1030 48.3180 10.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.1920 T22: 0.0689 REMARK 3 T33: 0.0064 T12: 0.0126 REMARK 3 T13: 0.0457 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.7093 L22: 3.9038 REMARK 3 L33: 2.1421 L12: 2.0475 REMARK 3 L13: -0.3778 L23: -0.1738 REMARK 3 S TENSOR REMARK 3 S11: 0.1120 S12: -0.2327 S13: 0.1084 REMARK 3 S21: 0.4388 S22: -0.0798 S23: 0.0735 REMARK 3 S31: -0.0056 S32: 0.1781 S33: -0.0322 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1990 43.4670 10.7660 REMARK 3 T TENSOR REMARK 3 T11: 0.1071 T22: 0.0413 REMARK 3 T33: 0.0460 T12: -0.0077 REMARK 3 T13: 0.0397 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.4851 L22: 0.8934 REMARK 3 L33: 2.3719 L12: 0.0773 REMARK 3 L13: -0.6807 L23: -0.3523 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: 0.0649 S13: -0.0824 REMARK 3 S21: -0.0017 S22: 0.0002 S23: 0.1433 REMARK 3 S31: 0.0212 S32: -0.2532 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1900 23.2860 41.7640 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0709 REMARK 3 T33: 0.0474 T12: -0.0126 REMARK 3 T13: 0.0318 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.8636 L22: 0.9693 REMARK 3 L33: 0.7386 L12: -0.2650 REMARK 3 L13: 0.1721 L23: -0.0876 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.0802 S13: 0.1514 REMARK 3 S21: 0.0682 S22: 0.0372 S23: -0.0992 REMARK 3 S31: -0.0945 S32: 0.0301 S33: -0.0613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3RSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.9590 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : 0.71700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2AX3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CACODYLATE, 1.6 M NA CITRATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.13550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.13550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 77.43950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 61.13550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 61.13550 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 77.43950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.13550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 61.13550 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 77.43950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 61.13550 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.13550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 77.43950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 61.13550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.13550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 77.43950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.13550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 61.13550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 77.43950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 61.13550 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 61.13550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 77.43950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.13550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.13550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 77.43950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 50290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 137190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -185.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 GLU A 490 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -4 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 147 -55.93 73.14 REMARK 500 ARG A 161 -57.27 78.25 REMARK 500 GLU A 336 53.15 -105.11 REMARK 500 ALA A 343 -124.10 53.78 REMARK 500 TYR A 383 18.86 58.69 REMARK 500 GLN A 467 -163.68 -109.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAP A 492 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 491 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 52 OD1 REMARK 620 2 ASP A 114 O 91.2 REMARK 620 3 ASP A 114 OD2 144.5 63.7 REMARK 620 4 PHE A 117 O 74.8 156.7 118.6 REMARK 620 5 VAL A 146 O 79.2 86.1 120.6 108.8 REMARK 620 6 VAL A 148 O 133.5 121.2 82.0 81.2 71.7 REMARK 620 7 SER A 150 OG 104.0 99.8 60.1 66.8 173.2 102.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 492 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AX3 RELATED DB: PDB REMARK 900 APO-PROTEIN REMARK 900 RELATED ID: 3RNO RELATED DB: PDB REMARK 900 RELATED ID: 3RO7 RELATED DB: PDB REMARK 900 RELATED ID: 3ROE RELATED DB: PDB REMARK 900 RELATED ID: 3ROG RELATED DB: PDB REMARK 900 RELATED ID: 3ROX RELATED DB: PDB REMARK 900 RELATED ID: 3ROZ RELATED DB: PDB REMARK 900 RELATED ID: 3RRB RELATED DB: PDB REMARK 900 RELATED ID: 3RRE RELATED DB: PDB REMARK 900 RELATED ID: 3RRF RELATED DB: PDB REMARK 900 RELATED ID: 3RRJ RELATED DB: PDB REMARK 900 RELATED ID: 3RS8 RELATED DB: PDB REMARK 900 RELATED ID: 3RS9 RELATED DB: PDB REMARK 900 RELATED ID: 3RSF RELATED DB: PDB REMARK 900 RELATED ID: 3RSG RELATED DB: PDB REMARK 900 RELATED ID: 3RSQ RELATED DB: PDB REMARK 900 RELATED ID: 3RT7 RELATED DB: PDB REMARK 900 RELATED ID: 3RT9 RELATED DB: PDB REMARK 900 RELATED ID: 3RTA RELATED DB: PDB REMARK 900 RELATED ID: 3RTB RELATED DB: PDB REMARK 900 RELATED ID: 3RTC RELATED DB: PDB REMARK 900 RELATED ID: 3RTD RELATED DB: PDB REMARK 900 RELATED ID: 3RTE RELATED DB: PDB REMARK 900 RELATED ID: 3RTG RELATED DB: PDB REMARK 900 RELATED ID: 3RU2 RELATED DB: PDB REMARK 900 RELATED ID: 3RU3 RELATED DB: PDB DBREF 3RSS A 1 490 UNP Q9X024 Q9X024_THEMA 1 490 DBREF 3RSS B 0 7 PDB 3RSS 3RSS 0 7 SEQADV 3RSS MET A -11 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS GLY A -10 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS SER A -9 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS ASP A -8 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS LYS A -7 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS ILE A -6 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS HIS A -5 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS HIS A -4 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS HIS A -3 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS HIS A -2 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS HIS A -1 UNP Q9X024 EXPRESSION TAG SEQADV 3RSS HIS A 0 UNP Q9X024 EXPRESSION TAG SEQRES 1 A 502 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 502 LYS GLU ILE ASP GLU LEU THR ILE LYS GLU TYR GLY VAL SEQRES 3 A 502 ASP SER ARG ILE LEU MET GLU ARG ALA GLY ILE SER VAL SEQRES 4 A 502 VAL LEU ALA MET GLU GLU GLU LEU GLY ASN LEU SER ASP SEQRES 5 A 502 TYR ARG PHE LEU VAL LEU CYS GLY GLY GLY ASN ASN GLY SEQRES 6 A 502 GLY ASP GLY PHE VAL VAL ALA ARG ASN LEU LEU GLY VAL SEQRES 7 A 502 VAL LYS ASP VAL LEU VAL VAL PHE LEU GLY LYS LYS LYS SEQRES 8 A 502 THR PRO ASP CYS GLU TYR ASN TYR GLY LEU TYR LYS LYS SEQRES 9 A 502 PHE GLY GLY LYS VAL VAL GLU GLN PHE GLU PRO SER ILE SEQRES 10 A 502 LEU ASN GLU PHE ASP VAL VAL VAL ASP ALA ILE PHE GLY SEQRES 11 A 502 THR GLY LEU ARG GLY GLU ILE THR GLY GLU TYR ALA GLU SEQRES 12 A 502 ILE ILE ASN LEU VAL ASN LYS SER GLY LYS VAL VAL VAL SEQRES 13 A 502 SER VAL ASP VAL PRO SER GLY ILE ASP SER ASN THR GLY SEQRES 14 A 502 LYS VAL LEU ARG THR ALA VAL LYS ALA ASP LEU THR VAL SEQRES 15 A 502 THR PHE GLY VAL PRO LYS ILE GLY HIS ILE LEU PHE PRO SEQRES 16 A 502 GLY ARG ASP LEU THR GLY LYS LEU LYS VAL ALA ASN ILE SEQRES 17 A 502 GLY HIS PRO VAL HIS LEU ILE ASN SER ILE ASN ARG TYR SEQRES 18 A 502 VAL ILE THR ARG GLU MET VAL ARG SER LEU LEU PRO GLU SEQRES 19 A 502 ARG PRO ARG ASP SER HIS LYS GLY THR TYR GLY LYS VAL SEQRES 20 A 502 LEU ILE ILE ALA GLY SER ARG LEU TYR SER GLY ALA PRO SEQRES 21 A 502 VAL LEU SER GLY MET GLY SER LEU LYS VAL GLY THR GLY SEQRES 22 A 502 LEU VAL LYS LEU ALA VAL PRO PHE PRO GLN ASN LEU ILE SEQRES 23 A 502 ALA THR SER ARG PHE PRO GLU LEU ILE SER VAL PRO ILE SEQRES 24 A 502 ASP THR GLU LYS GLY PHE PHE SER LEU GLN ASN LEU GLN SEQRES 25 A 502 GLU CYS LEU GLU LEU SER LYS ASP VAL ASP VAL VAL ALA SEQRES 26 A 502 ILE GLY PRO GLY LEU GLY ASN ASN GLU HIS VAL ARG GLU SEQRES 27 A 502 PHE VAL ASN GLU PHE LEU LYS THR LEU GLU LYS PRO ALA SEQRES 28 A 502 VAL ILE ASP ALA ASP ALA ILE ASN VAL LEU ASP THR SER SEQRES 29 A 502 VAL LEU LYS GLU ARG LYS SER PRO ALA VAL LEU THR PRO SEQRES 30 A 502 HIS PRO GLY GLU MET ALA ARG LEU VAL LYS LYS THR VAL SEQRES 31 A 502 GLY ASP VAL LYS TYR ASN TYR GLU LEU ALA GLU GLU PHE SEQRES 32 A 502 ALA LYS GLU ASN ASP CYS VAL LEU VAL LEU LYS SER ALA SEQRES 33 A 502 THR THR ILE VAL THR ASP GLY GLU LYS THR LEU PHE ASN SEQRES 34 A 502 ILE THR GLY ASN THR GLY LEU SER LYS GLY GLY SER GLY SEQRES 35 A 502 ASP VAL LEU THR GLY MET ILE ALA GLY PHE ILE ALA GLN SEQRES 36 A 502 GLY LEU SER PRO LEU GLU ALA SER THR VAL SER VAL TYR SEQRES 37 A 502 LEU HIS GLY PHE ALA ALA GLU LEU PHE GLU GLN ASP GLU SEQRES 38 A 502 ARG GLY LEU THR ALA SER GLU LEU LEU ARG LEU ILE PRO SEQRES 39 A 502 GLU ALA ILE ARG ARG LEU LYS GLU SEQRES 1 B 8 ALA PRO ALA TRP LEU PHE GLU ALA HET K A 491 1 HET NAP A 492 40 HETNAM K POTASSIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 K K 1+ FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 HOH *184(H2 O) HELIX 1 1 HIS A 0 GLU A 11 1 12 HELIX 2 2 ASP A 15 GLY A 36 1 22 HELIX 3 3 GLY A 50 LEU A 64 1 15 HELIX 4 4 THR A 80 PHE A 93 1 14 HELIX 5 5 GLU A 102 PHE A 109 5 8 HELIX 6 6 THR A 126 LYS A 138 1 13 HELIX 7 7 LYS A 176 LEU A 181 1 6 HELIX 8 8 PRO A 183 GLY A 189 1 7 HELIX 9 9 PRO A 199 ASN A 204 1 6 HELIX 10 10 THR A 212 LEU A 220 1 9 HELIX 11 11 HIS A 228 TYR A 232 5 5 HELIX 12 12 GLY A 246 VAL A 258 1 13 HELIX 13 13 GLN A 271 PHE A 279 1 9 HELIX 14 14 SER A 295 GLN A 297 5 3 HELIX 15 15 ASN A 298 LYS A 307 1 10 HELIX 16 16 ASN A 321 LEU A 335 1 15 HELIX 17 17 ASP A 342 VAL A 348 1 7 HELIX 18 18 ASP A 350 ARG A 357 1 8 HELIX 19 19 HIS A 366 LYS A 375 1 10 HELIX 20 20 THR A 377 LYS A 382 1 6 HELIX 21 21 ASN A 384 ASP A 396 1 13 HELIX 22 22 ASN A 421 SER A 425 5 5 HELIX 23 23 GLY A 428 GLN A 443 1 16 HELIX 24 24 SER A 446 LEU A 464 1 19 HELIX 25 25 ASP A 468 LEU A 472 5 5 HELIX 26 26 THR A 473 LYS A 489 1 17 SHEET 1 A 8 VAL A 97 VAL A 98 0 SHEET 2 A 8 ASP A 69 PHE A 74 1 N PHE A 74 O VAL A 98 SHEET 3 A 8 ARG A 42 CYS A 47 1 N VAL A 45 O LEU A 71 SHEET 4 A 8 VAL A 111 ALA A 115 1 O VAL A 113 N LEU A 44 SHEET 5 A 8 VAL A 142 VAL A 146 1 O VAL A 144 N ASP A 114 SHEET 6 A 8 LEU A 168 PHE A 172 1 O LEU A 168 N SER A 145 SHEET 7 A 8 LYS A 190 ALA A 194 1 O LYS A 190 N THR A 169 SHEET 8 A 8 PHE B 5 GLU B 6 -1 O GLU B 6 N VAL A 193 SHEET 1 B10 ARG A 208 VAL A 210 0 SHEET 2 B10 THR A 414 ASN A 417 1 O PHE A 416 N TYR A 209 SHEET 3 B10 THR A 406 THR A 409 -1 N VAL A 408 O LEU A 415 SHEET 4 B10 VAL A 398 LEU A 401 -1 N LEU A 399 O THR A 409 SHEET 5 B10 ALA A 361 LEU A 363 1 N LEU A 363 O VAL A 398 SHEET 6 B10 ALA A 339 ILE A 341 1 N ILE A 341 O VAL A 362 SHEET 7 B10 VAL A 311 ILE A 314 1 N ILE A 314 O VAL A 340 SHEET 8 B10 LYS A 234 ILE A 238 1 N ILE A 238 O ALA A 313 SHEET 9 B10 LEU A 262 PRO A 268 1 O ALA A 266 N ILE A 237 SHEET 10 B10 ILE A 283 ILE A 287 1 O VAL A 285 N LEU A 265 LINK OD1 ASN A 52 K K A 491 1555 1555 2.83 LINK O ASP A 114 K K A 491 1555 1555 3.00 LINK OD2 ASP A 114 K K A 491 1555 1555 3.43 LINK O PHE A 117 K K A 491 1555 1555 2.73 LINK O VAL A 146 K K A 491 1555 1555 2.92 LINK O VAL A 148 K K A 491 1555 1555 2.74 LINK OG SER A 150 K K A 491 1555 1555 2.96 CISPEP 1 PHE A 182 PRO A 183 0 7.06 CISPEP 2 PHE A 269 PRO A 270 0 2.86 SITE 1 AC1 6 ASN A 52 ASP A 114 PHE A 117 VAL A 146 SITE 2 AC1 6 VAL A 148 SER A 150 SITE 1 AC2 24 GLY A 50 ASN A 51 ASN A 52 ASP A 55 SITE 2 AC2 24 PHE A 117 GLY A 118 THR A 119 GLY A 120 SITE 3 AC2 24 LEU A 121 ARG A 122 GLY A 123 GLU A 124 SITE 4 AC2 24 TYR A 129 ASP A 147 LYS A 375 HOH A 496 SITE 5 AC2 24 HOH A 531 HOH A 547 HOH A 549 HOH A 565 SITE 6 AC2 24 HOH A 573 HOH A 586 HOH A 596 HOH A 642 CRYST1 122.271 122.271 154.879 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006457 0.00000