PDB Short entry for 3S5N HEADER LYASE 23-MAY-11 3S5N TITLE CRYSTAL STRUCTURE OF HUMAN 4-HYDROXY-2-OXOGLUTARATE ALDOLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-2-OXOGLUTARATE ALDOLASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIHYDRODIPICOLINATE SYNTHASE-LIKE, DHDPS-LIKE PROTEIN, 2- COMPND 5 KETO-4-HYDROXYGLUTARATE ALDOLASE, KHG-ALDOLASE, PROTEIN 569272; COMPND 6 EC: 4.1.3.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C10ORF65, DHDPSL, HOGA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET151 KEYWDS ALDOLASE, BETA BARREL, HYDROXYPROLINE METABOLISM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.RIEDEL,W.T.LOWTHER REVDAT 2 28-FEB-24 3S5N 1 REMARK SEQADV LINK REVDAT 1 26-OCT-11 3S5N 0 JRNL AUTH T.J.RIEDEL,L.C.JOHNSON,J.KNIGHT,R.R.HANTGAN,R.P.HOLMES, JRNL AUTH 2 W.T.LOWTHER JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF HUMAN JRNL TITL 2 4-HYDROXY-2-OXOGLUTARATE ALDOLASE: IMPLICATIONS FOR JRNL TITL 3 HYDROXYPROLINE METABOLISM IN PRIMARY HYPEROXALURIA. JRNL REF PLOS ONE V. 6 26021 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21998747 JRNL DOI 10.1371/JOURNAL.PONE.0026021 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1170 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1571 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78000 REMARK 3 B22 (A**2) : -0.78000 REMARK 3 B33 (A**2) : 1.17000 REMARK 3 B12 (A**2) : -0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.657 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2298 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3112 ; 1.433 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 5.695 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;40.785 ;23.587 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;15.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.107 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1730 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1464 ; 0.586 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2354 ; 1.164 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 834 ; 2.030 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 758 ; 3.423 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3S5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22814 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 59.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 41.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, KSCN, BIS TRIS PROPANE, REMARK 280 TCEP, ETHELYENE GLYCOL, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.02333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.04667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.02333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.04667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.02333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.04667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.02333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.07150 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -123.09945 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -36.02333 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 71.07150 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 -123.09945 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -36.02333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 GLU A 29 REMARK 465 GLY A 30 REMARK 465 LYS A 31 REMARK 465 LYS A 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 196 O HOH A 382 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 96.91 36.68 REMARK 500 CYS A 139 -0.04 -142.12 REMARK 500 TYR A 141 54.38 -100.19 REMARK 500 PHE A 217 110.75 -161.76 REMARK 500 THR A 280 -94.13 -123.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 330 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 187 O REMARK 620 2 HIS A 189 O 89.2 REMARK 620 3 ILE A 192 O 102.8 81.9 REMARK 620 4 ASP A 216 O 99.9 167.1 87.1 REMARK 620 5 HOH A 353 O 75.2 107.0 170.8 84.4 REMARK 620 6 HOH A 370 O 159.2 82.9 95.1 91.5 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 331 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 212 O REMARK 620 2 GLN A 215 O 77.5 REMARK 620 3 PHE A 217 O 116.5 107.0 REMARK 620 4 HOH A 383 O 150.9 74.1 67.3 REMARK 620 5 HOH A 384 O 113.1 74.4 129.4 64.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S5O RELATED DB: PDB DBREF 3S5N A 26 327 UNP Q86XE5 HOGA1_HUMAN 26 327 SEQADV 3S5N GLY A 24 UNP Q86XE5 EXPRESSION TAG SEQADV 3S5N PRO A 25 UNP Q86XE5 EXPRESSION TAG SEQRES 1 A 304 GLY PRO ALA SER GLY GLU GLY LYS LYS VAL ASP ILE ALA SEQRES 2 A 304 GLY ILE TYR PRO PRO VAL THR THR PRO PHE THR ALA THR SEQRES 3 A 304 ALA GLU VAL ASP TYR GLY LYS LEU GLU GLU ASN LEU HIS SEQRES 4 A 304 LYS LEU GLY THR PHE PRO PHE ARG GLY PHE VAL VAL GLN SEQRES 5 A 304 GLY SER ASN GLY GLU PHE PRO PHE LEU THR SER SER GLU SEQRES 6 A 304 ARG LEU GLU VAL VAL SER ARG VAL ARG GLN ALA MET PRO SEQRES 7 A 304 LYS ASN ARG LEU LEU LEU ALA GLY SER GLY CYS GLU SER SEQRES 8 A 304 THR GLN ALA THR VAL GLU MET THR VAL SER MET ALA GLN SEQRES 9 A 304 VAL GLY ALA ASP ALA ALA MET VAL VAL THR PRO CYS TYR SEQRES 10 A 304 TYR ARG GLY ARG MET SER SER ALA ALA LEU ILE HIS HIS SEQRES 11 A 304 TYR THR LYS VAL ALA ASP LEU SER PRO ILE PRO VAL VAL SEQRES 12 A 304 LEU TYR SER VAL PRO ALA ASN THR GLY LEU ASP LEU PRO SEQRES 13 A 304 VAL ASP ALA VAL VAL THR LEU SER GLN HIS PRO ASN ILE SEQRES 14 A 304 VAL GLY MET LYS ASP SER GLY GLY ASP VAL THR ARG ILE SEQRES 15 A 304 GLY LEU ILE VAL HIS LYS THR ARG LYS GLN ASP PHE GLN SEQRES 16 A 304 VAL LEU ALA GLY SER ALA GLY PHE LEU MET ALA SER TYR SEQRES 17 A 304 ALA LEU GLY ALA VAL GLY GLY VAL CYS ALA LEU ALA ASN SEQRES 18 A 304 VAL LEU GLY ALA GLN VAL CYS GLN LEU GLU ARG LEU CYS SEQRES 19 A 304 CYS THR GLY GLN TRP GLU ASP ALA GLN LYS LEU GLN HIS SEQRES 20 A 304 ARG LEU ILE GLU PRO ASN ALA ALA VAL THR ARG ARG PHE SEQRES 21 A 304 GLY ILE PRO GLY LEU LYS LYS ILE MET ASP TRP PHE GLY SEQRES 22 A 304 TYR TYR GLY GLY PRO CYS ARG ALA PRO LEU GLN GLU LEU SEQRES 23 A 304 SER PRO ALA GLU GLU GLU ALA LEU ARG MET ASP PHE THR SEQRES 24 A 304 SER ASN GLY TRP LEU HET K A 330 1 HET NA A 331 1 HET EDO A 1 4 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 K K 1+ FORMUL 3 NA NA 1+ FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 HOH *47(H2 O) HELIX 1 1 ASP A 53 GLY A 65 1 13 HELIX 2 2 GLY A 76 LEU A 84 5 9 HELIX 3 3 THR A 85 ALA A 99 1 15 HELIX 4 4 SER A 114 VAL A 128 1 15 HELIX 5 5 TYR A 141 MET A 145 5 5 HELIX 6 6 SER A 146 SER A 161 1 16 HELIX 7 7 VAL A 170 GLY A 175 1 6 HELIX 8 8 PRO A 179 GLN A 188 1 10 HELIX 9 9 ASP A 201 THR A 212 1 12 HELIX 10 10 SER A 223 GLY A 225 5 3 HELIX 11 11 PHE A 226 GLY A 234 1 9 HELIX 12 12 ALA A 241 VAL A 245 5 5 HELIX 13 13 LEU A 246 THR A 259 1 14 HELIX 14 14 GLN A 261 VAL A 279 1 19 HELIX 15 15 PHE A 283 PHE A 295 1 13 HELIX 16 16 SER A 310 SER A 323 1 14 SHEET 1 A 9 GLY A 37 TYR A 39 0 SHEET 2 A 9 GLY A 237 VAL A 239 1 O GLY A 238 N TYR A 39 SHEET 3 A 9 GLN A 218 ALA A 221 1 N ALA A 221 O GLY A 237 SHEET 4 A 9 ILE A 192 ASP A 197 1 N MET A 195 O LEU A 220 SHEET 5 A 9 VAL A 165 SER A 169 1 N LEU A 167 O LYS A 196 SHEET 6 A 9 ALA A 132 VAL A 136 1 N ALA A 133 O VAL A 166 SHEET 7 A 9 LEU A 105 GLY A 109 1 N ALA A 108 O MET A 134 SHEET 8 A 9 GLY A 71 VAL A 74 1 N VAL A 74 O GLY A 109 SHEET 9 A 9 PRO A 41 VAL A 42 1 N VAL A 42 O VAL A 73 LINK O SER A 187 K K A 330 1555 1555 2.58 LINK O HIS A 189 K K A 330 1555 1555 2.67 LINK O ILE A 192 K K A 330 1555 1555 2.73 LINK O THR A 212 NA NA A 331 1555 1555 2.98 LINK O GLN A 215 NA NA A 331 1555 1555 2.65 LINK O ASP A 216 K K A 330 1555 1555 2.71 LINK O PHE A 217 NA NA A 331 1555 1555 3.03 LINK K K A 330 O HOH A 353 1555 1555 3.00 LINK K K A 330 O HOH A 370 1555 1555 2.61 LINK NA NA A 331 O HOH A 383 1555 1555 2.68 LINK NA NA A 331 O HOH A 384 1555 1555 2.23 CISPEP 1 ALA A 304 PRO A 305 0 13.51 SITE 1 AC1 6 SER A 187 HIS A 189 ILE A 192 ASP A 216 SITE 2 AC1 6 HOH A 353 HOH A 370 SITE 1 AC2 5 THR A 212 GLN A 215 PHE A 217 HOH A 383 SITE 2 AC2 5 HOH A 384 SITE 1 AC3 6 EDO A 2 LYS A 63 PHE A 295 GLY A 296 SITE 2 AC3 6 TYR A 297 HOH A 381 SITE 1 AC4 3 EDO A 1 LYS A 63 HOH A 380 SITE 1 AC5 6 VAL A 42 THR A 43 PRO A 45 ASN A 60 SITE 2 AC5 6 ASN A 244 MET A 292 SITE 1 AC6 7 EDO A 6 GLY A 143 ARG A 144 THR A 280 SITE 2 AC6 7 ARG A 281 ARG A 282 GLY A 284 SITE 1 AC7 7 EDO A 6 SER A 77 TYR A 141 ASN A 173 SITE 2 AC7 7 THR A 280 HOH A 385 HOH A 386 SITE 1 AC8 9 EDO A 4 EDO A 5 TYR A 141 GLY A 143 SITE 2 AC8 9 ARG A 144 GLY A 284 ILE A 285 PRO A 286 SITE 3 AC8 9 LEU A 306 CRYST1 142.143 142.143 108.070 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007035 0.004062 0.000000 0.00000 SCALE2 0.000000 0.008124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009253 0.00000