PDB Short entry for 3S7B HEADER TRANSFERASE 26-MAY-11 3S7B TITLE STRUCTURAL BASIS OF SUBSTRATE METHYLATION AND INHIBITION OF SMYD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SMYD2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSKM-B, HISTONE METHYLTRANSFERASE SMYD2, LYSINE N- COMPND 5 METHYLTRANSFERASE 3C, SET AND MYND DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 2.1.1.-, 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD2, KMT3C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.D.FERGUSON REVDAT 3 28-FEB-24 3S7B 1 REMARK SEQADV LINK REVDAT 2 21-SEP-11 3S7B 1 JRNL REVDAT 1 10-AUG-11 3S7B 0 JRNL AUTH A.D.FERGUSON,N.A.LARSEN,T.HOWARD,H.POLLARD,I.GREEN,C.GRANDE, JRNL AUTH 2 T.CHEUNG,R.GARCIA-ARENAS,S.COWEN,J.WU,R.GODIN,H.CHEN,N.KEEN JRNL TITL STRUCTURAL BASIS OF SUBSTRATE METHYLATION AND INHIBITION OF JRNL TITL 2 SMYD2. JRNL REF STRUCTURE V. 19 1262 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21782458 JRNL DOI 10.1016/J.STR.2011.06.011 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1243 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2932 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2012 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2778 REMARK 3 BIN R VALUE (WORKING SET) : 0.1995 REMARK 3 BIN FREE R VALUE : 0.2326 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.25 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 154 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.26970 REMARK 3 B22 (A**2) : 2.26970 REMARK 3 B33 (A**2) : -4.53940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.317 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.261 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3629 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4891 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1291 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 93 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 511 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3629 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 450 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4174 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.20 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.13 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 5 A 433 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9207 -51.5192 -0.7973 REMARK 3 T TENSOR REMARK 3 T11: -0.0805 T22: -0.1711 REMARK 3 T33: -0.1573 T12: 0.0512 REMARK 3 T13: 0.1124 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.3038 L22: 1.4068 REMARK 3 L33: 1.2801 L12: 0.1006 REMARK 3 L13: -0.0481 L23: -0.1453 REMARK 3 S TENSOR REMARK 3 S11: -0.1634 S12: -0.0104 S13: -0.3388 REMARK 3 S21: -0.0698 S22: 0.0181 S23: -0.0542 REMARK 3 S31: -0.0187 S32: -0.1237 S33: 0.1453 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0723 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24403 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 55.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M TRIS-HCL, 5% REMARK 280 ETHANOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 77.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.93000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.41500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 77.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.93000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.41500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 77.93000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 77.93000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.41500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 77.93000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 77.93000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.41500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 90 -72.89 -49.16 REMARK 500 ASN A 101 44.57 -144.15 REMARK 500 VAL A 277 49.35 -107.87 REMARK 500 TYR A 311 -17.46 -142.06 REMARK 500 HIS A 397 68.20 -100.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 440 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 CYS A 55 SG 106.7 REMARK 620 3 CYS A 74 SG 104.5 98.3 REMARK 620 4 CYS A 78 SG 109.0 118.0 118.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 441 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 110.6 REMARK 620 3 HIS A 86 NE2 113.4 100.4 REMARK 620 4 CYS A 90 SG 109.1 117.1 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 442 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 262 SG 117.5 REMARK 620 3 CYS A 264 SG 109.7 107.4 REMARK 620 4 CYS A 267 SG 92.2 116.2 113.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 438 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH5 A 439 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 441 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 442 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S7D RELATED DB: PDB REMARK 900 RELATED ID: 3S7F RELATED DB: PDB REMARK 900 RELATED ID: 3S7J RELATED DB: PDB DBREF 3S7B A 1 433 UNP Q9NRG4 SMYD2_HUMAN 1 433 SEQADV 3S7B GLU A 165 UNP Q9NRG4 GLY 165 CONFLICT SEQRES 1 A 433 MET ARG ALA GLU GLY LEU GLY GLY LEU GLU ARG PHE CYS SEQRES 2 A 433 SER PRO GLY LYS GLY ARG GLY LEU ARG ALA LEU GLN PRO SEQRES 3 A 433 PHE GLN VAL GLY ASP LEU LEU PHE SER CYS PRO ALA TYR SEQRES 4 A 433 ALA TYR VAL LEU THR VAL ASN GLU ARG GLY ASN HIS CYS SEQRES 5 A 433 GLU TYR CYS PHE THR ARG LYS GLU GLY LEU SER LYS CYS SEQRES 6 A 433 GLY ARG CYS LYS GLN ALA PHE TYR CYS ASN VAL GLU CYS SEQRES 7 A 433 GLN LYS GLU ASP TRP PRO MET HIS LYS LEU GLU CYS SER SEQRES 8 A 433 PRO MET VAL VAL PHE GLY GLU ASN TRP ASN PRO SER GLU SEQRES 9 A 433 THR VAL ARG LEU THR ALA ARG ILE LEU ALA LYS GLN LYS SEQRES 10 A 433 ILE HIS PRO GLU ARG THR PRO SER GLU LYS LEU LEU ALA SEQRES 11 A 433 VAL LYS GLU PHE GLU SER HIS LEU ASP LYS LEU ASP ASN SEQRES 12 A 433 GLU LYS LYS ASP LEU ILE GLN SER ASP ILE ALA ALA LEU SEQRES 13 A 433 HIS HIS PHE TYR SER LYS HIS LEU GLU PHE PRO ASP ASN SEQRES 14 A 433 ASP SER LEU VAL VAL LEU PHE ALA GLN VAL ASN CYS ASN SEQRES 15 A 433 GLY PHE THR ILE GLU ASP GLU GLU LEU SER HIS LEU GLY SEQRES 16 A 433 SER ALA ILE PHE PRO ASP VAL ALA LEU MET ASN HIS SER SEQRES 17 A 433 CYS CYS PRO ASN VAL ILE VAL THR TYR LYS GLY THR LEU SEQRES 18 A 433 ALA GLU VAL ARG ALA VAL GLN GLU ILE LYS PRO GLY GLU SEQRES 19 A 433 GLU VAL PHE THR SER TYR ILE ASP LEU LEU TYR PRO THR SEQRES 20 A 433 GLU ASP ARG ASN ASP ARG LEU ARG ASP SER TYR PHE PHE SEQRES 21 A 433 THR CYS GLU CYS GLN GLU CYS THR THR LYS ASP LYS ASP SEQRES 22 A 433 LYS ALA LYS VAL GLU ILE ARG LYS LEU SER ASP PRO PRO SEQRES 23 A 433 LYS ALA GLU ALA ILE ARG ASP MET VAL ARG TYR ALA ARG SEQRES 24 A 433 ASN VAL ILE GLU GLU PHE ARG ARG ALA LYS HIS TYR LYS SEQRES 25 A 433 SER PRO SER GLU LEU LEU GLU ILE CYS GLU LEU SER GLN SEQRES 26 A 433 GLU LYS MET SER SER VAL PHE GLU ASP SER ASN VAL TYR SEQRES 27 A 433 MET LEU HIS MET MET TYR GLN ALA MET GLY VAL CYS LEU SEQRES 28 A 433 TYR MET GLN ASP TRP GLU GLY ALA LEU GLN TYR GLY GLN SEQRES 29 A 433 LYS ILE ILE LYS PRO TYR SER LYS HIS TYR PRO LEU TYR SEQRES 30 A 433 SER LEU ASN VAL ALA SER MET TRP LEU LYS LEU GLY ARG SEQRES 31 A 433 LEU TYR MET GLY LEU GLU HIS LYS ALA ALA GLY GLU LYS SEQRES 32 A 433 ALA LEU LYS LYS ALA ILE ALA ILE MET GLU VAL ALA HIS SEQRES 33 A 433 GLY LYS ASP HIS PRO TYR ILE SER GLU ILE LYS GLN GLU SEQRES 34 A 433 ILE GLU SER HIS HET SAM A1000 27 HET BU3 A 434 6 HET BU3 A 435 6 HET BU3 A 436 6 HET BU3 A 437 6 HET BU3 A 438 6 HET NH5 A 439 39 HET ZN A 440 1 HET ZN A 441 1 HET ZN A 442 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM BU3 (R,R)-2,3-BUTANEDIOL HETNAM NH5 N-CYCLOHEXYL-N~3~-[2-(3,4-DICHLOROPHENYL)ETHYL]-N-(2- HETNAM 2 NH5 {[2-(5-HYDROXY-3-OXO-3,4-DIHYDRO-2H-1,4-BENZOXAZIN-8- HETNAM 3 NH5 YL)ETHYL]AMINO}ETHYL)-BETA-ALANINAMIDE HETNAM ZN ZINC ION FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 BU3 5(C4 H10 O2) FORMUL 8 NH5 C29 H38 CL2 N4 O4 FORMUL 9 ZN 3(ZN 2+) FORMUL 12 HOH *160(H2 O) HELIX 1 1 VAL A 45 ARG A 48 5 4 HELIX 2 2 ASN A 75 LYS A 87 1 13 HELIX 3 3 GLU A 89 GLY A 97 1 9 HELIX 4 4 GLU A 98 TRP A 100 5 3 HELIX 5 5 SER A 103 HIS A 119 1 17 HELIX 6 6 ALA A 130 PHE A 134 5 5 HELIX 7 7 HIS A 137 LEU A 141 5 5 HELIX 8 8 ASP A 142 SER A 161 1 20 HELIX 9 9 ASP A 168 GLY A 183 1 16 HELIX 10 10 PHE A 199 LEU A 204 1 6 HELIX 11 11 PRO A 246 PHE A 259 1 14 HELIX 12 12 CYS A 264 LYS A 270 1 7 HELIX 13 13 LYS A 272 VAL A 277 1 6 HELIX 14 14 LYS A 287 LYS A 309 1 23 HELIX 15 15 SER A 313 SER A 329 1 17 HELIX 16 16 ASN A 336 MET A 353 1 18 HELIX 17 17 ASP A 355 TYR A 374 1 20 HELIX 18 18 SER A 378 LEU A 395 1 18 HELIX 19 19 HIS A 397 HIS A 416 1 20 HELIX 20 20 HIS A 420 HIS A 433 1 14 SHEET 1 A 2 LEU A 9 CYS A 13 0 SHEET 2 A 2 ARG A 19 ALA A 23 -1 O ARG A 22 N GLU A 10 SHEET 1 B 3 LEU A 32 PRO A 37 0 SHEET 2 B 3 LEU A 221 ALA A 226 -1 O VAL A 224 N LEU A 33 SHEET 3 B 3 VAL A 213 LYS A 218 -1 N THR A 216 O GLU A 223 SHEET 1 C 3 ALA A 40 LEU A 43 0 SHEET 2 C 3 HIS A 193 ILE A 198 -1 O ILE A 198 N ALA A 40 SHEET 3 C 3 PHE A 184 GLU A 187 -1 N ILE A 186 O LEU A 194 SHEET 1 D 2 SER A 63 LYS A 64 0 SHEET 2 D 2 PHE A 72 TYR A 73 -1 O TYR A 73 N SER A 63 SHEET 1 E 2 ASN A 206 HIS A 207 0 SHEET 2 E 2 PHE A 237 THR A 238 1 O THR A 238 N ASN A 206 LINK SG CYS A 52 ZN ZN A 440 1555 1555 2.37 LINK SG CYS A 55 ZN ZN A 440 1555 1555 2.43 LINK SG CYS A 65 ZN ZN A 441 1555 1555 2.42 LINK SG CYS A 68 ZN ZN A 441 1555 1555 2.19 LINK SG CYS A 74 ZN ZN A 440 1555 1555 2.43 LINK SG CYS A 78 ZN ZN A 440 1555 1555 2.24 LINK NE2 HIS A 86 ZN ZN A 441 1555 1555 2.15 LINK SG CYS A 90 ZN ZN A 441 1555 1555 2.30 LINK SG CYS A 209 ZN ZN A 442 1555 1555 2.51 LINK SG CYS A 262 ZN ZN A 442 1555 1555 2.21 LINK SG CYS A 264 ZN ZN A 442 1555 1555 2.44 LINK SG CYS A 267 ZN ZN A 442 1555 1555 2.29 SITE 1 AC1 21 GLY A 16 LYS A 17 ARG A 19 GLU A 135 SITE 2 AC1 21 HIS A 137 LYS A 162 CYS A 181 ASN A 182 SITE 3 AC1 21 ALA A 203 LEU A 204 MET A 205 ASN A 206 SITE 4 AC1 21 HIS A 207 TYR A 240 TYR A 258 PHE A 260 SITE 5 AC1 21 BU3 A 438 NH5 A 439 HOH A 468 HOH A 471 SITE 6 AC1 21 HOH A 495 SITE 1 AC2 3 PRO A 314 VAL A 349 TYR A 352 SITE 1 AC3 3 TRP A 356 ARG A 390 GLY A 394 SITE 1 AC4 5 TYR A 41 TYR A 54 CYS A 55 THR A 220 SITE 2 AC4 5 HOH A 533 SITE 1 AC5 1 ARG A 67 SITE 1 AC6 4 GLY A 18 ARG A 19 GLU A 135 SAM A1000 SITE 1 AC7 16 THR A 105 ILE A 149 ASN A 180 CYS A 181 SITE 2 AC7 16 ASN A 182 GLY A 183 PHE A 184 THR A 185 SITE 3 AC7 16 ALA A 203 THR A 238 SER A 239 TYR A 240 SITE 4 AC7 16 SER A 257 TYR A 258 HOH A 523 SAM A1000 SITE 1 AC8 4 CYS A 52 CYS A 55 CYS A 74 CYS A 78 SITE 1 AC9 4 CYS A 65 CYS A 68 HIS A 86 CYS A 90 SITE 1 BC1 4 CYS A 209 CYS A 262 CYS A 264 CYS A 267 CRYST1 155.860 155.860 52.830 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018929 0.00000