PDB Short entry for 3S8Z HEADER SIGNALING PROTEIN 31-MAY-11 3S8Z TITLE CRYSTAL STRUCTURE OF LRP6-E3E4 CAVEAT 3S8Z NAG A 1244 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: E3E4, RESIDUES 629-1243; COMPND 5 SYNONYM: LRP-6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LRP6; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS WNT, RECEPTOR, LRP5, LRP6, LDL RECEPTOR-LIKE PROTEIN, DICKKOPF (DKK), KEYWDS 2 YWTD B-PROPELLER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.CHENG,W.XU REVDAT 4 13-SEP-23 3S8Z 1 HETSYN REVDAT 3 29-JUL-20 3S8Z 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HETNAM LINK SITE ATOM REVDAT 2 23-NOV-11 3S8Z 1 JRNL REVDAT 1 26-OCT-11 3S8Z 0 JRNL AUTH Z.CHENG,T.BIECHELE,Z.WEI,S.MORRONE,R.T.MOON,L.WANG,W.XU JRNL TITL CRYSTAL STRUCTURES OF THE EXTRACELLULAR DOMAIN OF LRP6 AND JRNL TITL 2 ITS COMPLEX WITH DKK1. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1204 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21984209 JRNL DOI 10.1038/NSMB.2139 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1225 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4260 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.5470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.35000 REMARK 3 B22 (A**2) : 2.73000 REMARK 3 B33 (A**2) : -6.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.560 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5016 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6816 ; 1.125 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 5.713 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;35.368 ;23.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 841 ;17.076 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.289 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 758 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3831 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0482 -19.7863 -32.7356 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.2466 REMARK 3 T33: 0.1887 T12: 0.0937 REMARK 3 T13: 0.0756 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 0.1884 L22: 0.6190 REMARK 3 L33: 1.5891 L12: -0.1748 REMARK 3 L13: -0.3800 L23: 0.8995 REMARK 3 S TENSOR REMARK 3 S11: 0.1181 S12: -0.0148 S13: -0.0628 REMARK 3 S21: -0.1385 S22: -0.0753 S23: -0.1495 REMARK 3 S31: -0.2359 S32: -0.2357 S33: -0.0428 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28053 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1IJQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM ADA PH 6.5, 100MM MGCL2, 12% REMARK 280 PEG6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.87500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 465 HIS A 624 REMARK 465 HIS A 625 REMARK 465 HIS A 626 REMARK 465 HIS A 627 REMARK 465 HIS A 628 REMARK 465 SER A 1005 REMARK 465 SER A 1006 REMARK 465 VAL A 1007 REMARK 465 PRO A 1008 REMARK 465 SER A 1009 REMARK 465 GLN A 1010 REMARK 465 ASN A 1011 REMARK 465 LEU A 1012 REMARK 465 GLU A 1013 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 639 -123.62 49.11 REMARK 500 GLU A 648 -11.17 56.15 REMARK 500 ASN A 651 -146.87 -145.97 REMARK 500 PRO A 657 78.01 -67.86 REMARK 500 SER A 665 -103.81 -129.90 REMARK 500 ASN A 692 20.67 -72.31 REMARK 500 ALA A 695 51.90 -158.77 REMARK 500 ASP A 705 -71.94 -119.26 REMARK 500 TYR A 706 77.94 -117.36 REMARK 500 GLU A 708 -105.38 -120.68 REMARK 500 TRP A 744 -10.39 -144.37 REMARK 500 ASP A 748 -89.49 -90.81 REMARK 500 ARG A 751 -94.80 -120.44 REMARK 500 HIS A 834 77.15 -156.16 REMARK 500 PHE A 836 -77.63 -140.81 REMARK 500 TYR A 841 -83.98 -116.32 REMARK 500 GLN A 842 -95.16 -110.87 REMARK 500 GLN A 887 63.07 -119.81 REMARK 500 HIS A 902 -93.41 -118.49 REMARK 500 HIS A 919 -20.11 78.64 REMARK 500 ARG A 927 -62.88 -149.92 REMARK 500 GLN A 940 -165.68 -126.29 REMARK 500 ASN A 966 82.15 -153.93 REMARK 500 ASN A 987 75.67 29.91 REMARK 500 GLN A 998 30.76 -80.59 REMARK 500 ARG A1060 -85.99 -130.97 REMARK 500 ARG A1079 -15.71 67.42 REMARK 500 PHE A1098 -63.47 -96.49 REMARK 500 SER A1102 -60.92 -140.99 REMARK 500 LEU A1131 -74.22 -60.12 REMARK 500 ASP A1141 5.76 -151.19 REMARK 500 SER A1142 -100.15 -82.62 REMARK 500 PHE A1153 -92.62 -76.25 REMARK 500 ASN A1155 27.96 -144.58 REMARK 500 THR A1173 -139.38 -83.50 REMARK 500 ALA A1186 -88.33 -64.81 REMARK 500 GLN A1187 61.28 -110.13 REMARK 500 HIS A1216 -99.88 -130.09 REMARK 500 LEU A1237 78.85 -115.08 REMARK 500 GLN A1238 -48.53 61.06 REMARK 500 LEU A1241 -37.66 -138.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S8V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LRP6-E3E4/DKK1C COMPLEX REMARK 900 RELATED ID: 3S94 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LRP6-E1E2 DBREF 3S8Z A 629 1243 UNP O75581 LRP6_HUMAN 629 1243 SEQADV 3S8Z HIS A 621 UNP O75581 EXPRESSION TAG SEQADV 3S8Z HIS A 622 UNP O75581 EXPRESSION TAG SEQADV 3S8Z HIS A 623 UNP O75581 EXPRESSION TAG SEQADV 3S8Z HIS A 624 UNP O75581 EXPRESSION TAG SEQADV 3S8Z HIS A 625 UNP O75581 EXPRESSION TAG SEQADV 3S8Z HIS A 626 UNP O75581 EXPRESSION TAG SEQADV 3S8Z HIS A 627 UNP O75581 EXPRESSION TAG SEQADV 3S8Z HIS A 628 UNP O75581 EXPRESSION TAG SEQADV 3S8Z ILE A 1062 UNP O75581 VAL 1062 VARIANT SEQRES 1 A 623 HIS HIS HIS HIS HIS HIS HIS HIS VAL PRO GLU ALA PHE SEQRES 2 A 623 LEU LEU PHE SER ARG ARG ALA ASP ILE ARG ARG ILE SER SEQRES 3 A 623 LEU GLU THR ASN ASN ASN ASN VAL ALA ILE PRO LEU THR SEQRES 4 A 623 GLY VAL LYS GLU ALA SER ALA LEU ASP PHE ASP VAL THR SEQRES 5 A 623 ASP ASN ARG ILE TYR TRP THR ASP ILE SER LEU LYS THR SEQRES 6 A 623 ILE SER ARG ALA PHE MET ASN GLY SER ALA LEU GLU HIS SEQRES 7 A 623 VAL VAL GLU PHE GLY LEU ASP TYR PRO GLU GLY MET ALA SEQRES 8 A 623 VAL ASP TRP LEU GLY LYS ASN LEU TYR TRP ALA ASP THR SEQRES 9 A 623 GLY THR ASN ARG ILE GLU VAL SER LYS LEU ASP GLY GLN SEQRES 10 A 623 HIS ARG GLN VAL LEU VAL TRP LYS ASP LEU ASP SER PRO SEQRES 11 A 623 ARG ALA LEU ALA LEU ASP PRO ALA GLU GLY PHE MET TYR SEQRES 12 A 623 TRP THR GLU TRP GLY GLY LYS PRO LYS ILE ASP ARG ALA SEQRES 13 A 623 ALA MET ASP GLY SER GLU ARG THR THR LEU VAL PRO ASN SEQRES 14 A 623 VAL GLY ARG ALA ASN GLY LEU THR ILE ASP TYR ALA LYS SEQRES 15 A 623 ARG ARG LEU TYR TRP THR ASP LEU ASP THR ASN LEU ILE SEQRES 16 A 623 GLU SER SER ASN MET LEU GLY LEU ASN ARG GLU VAL ILE SEQRES 17 A 623 ALA ASP ASP LEU PRO HIS PRO PHE GLY LEU THR GLN TYR SEQRES 18 A 623 GLN ASP TYR ILE TYR TRP THR ASP TRP SER ARG ARG SER SEQRES 19 A 623 ILE GLU ARG ALA ASN LYS THR SER GLY GLN ASN ARG THR SEQRES 20 A 623 ILE ILE GLN GLY HIS LEU ASP TYR VAL MET ASP ILE LEU SEQRES 21 A 623 VAL PHE HIS SER SER ARG GLN SER GLY TRP ASN GLU CYS SEQRES 22 A 623 ALA SER SER ASN GLY HIS CYS SER HIS LEU CYS LEU ALA SEQRES 23 A 623 VAL PRO VAL GLY GLY PHE VAL CYS GLY CYS PRO ALA HIS SEQRES 24 A 623 TYR SER LEU ASN ALA ASP ASN ARG THR CYS SER ALA PRO SEQRES 25 A 623 THR THR PHE LEU LEU PHE SER GLN LYS SER ALA ILE ASN SEQRES 26 A 623 ARG MET VAL ILE ASP GLU GLN GLN SER PRO ASP ILE ILE SEQRES 27 A 623 LEU PRO ILE HIS SER LEU ARG ASN VAL ARG ALA ILE ASP SEQRES 28 A 623 TYR ASP PRO LEU ASP LYS GLN LEU TYR TRP ILE ASP SER SEQRES 29 A 623 ARG GLN ASN MET ILE ARG LYS ALA GLN GLU ASP GLY SER SEQRES 30 A 623 GLN GLY PHE THR VAL VAL VAL SER SER VAL PRO SER GLN SEQRES 31 A 623 ASN LEU GLU ILE GLN PRO TYR ASP LEU SER ILE ASP ILE SEQRES 32 A 623 TYR SER ARG TYR ILE TYR TRP THR CYS GLU ALA THR ASN SEQRES 33 A 623 VAL ILE ASN VAL THR ARG LEU ASP GLY ARG SER VAL GLY SEQRES 34 A 623 VAL VAL LEU LYS GLY GLU GLN ASP ARG PRO ARG ALA ILE SEQRES 35 A 623 VAL VAL ASN PRO GLU LYS GLY TYR MET TYR PHE THR ASN SEQRES 36 A 623 LEU GLN GLU ARG SER PRO LYS ILE GLU ARG ALA ALA LEU SEQRES 37 A 623 ASP GLY THR GLU ARG GLU VAL LEU PHE PHE SER GLY LEU SEQRES 38 A 623 SER LYS PRO ILE ALA LEU ALA LEU ASP SER ARG LEU GLY SEQRES 39 A 623 LYS LEU PHE TRP ALA ASP SER ASP LEU ARG ARG ILE GLU SEQRES 40 A 623 SER SER ASP LEU SER GLY ALA ASN ARG ILE VAL LEU GLU SEQRES 41 A 623 ASP SER ASN ILE LEU GLN PRO VAL GLY LEU THR VAL PHE SEQRES 42 A 623 GLU ASN TRP LEU TYR TRP ILE ASP LYS GLN GLN GLN MET SEQRES 43 A 623 ILE GLU LYS ILE ASP MET THR GLY ARG GLU GLY ARG THR SEQRES 44 A 623 LYS VAL GLN ALA ARG ILE ALA GLN LEU SER ASP ILE HIS SEQRES 45 A 623 ALA VAL LYS GLU LEU ASN LEU GLN GLU TYR ARG GLN HIS SEQRES 46 A 623 PRO CYS ALA GLN ASP ASN GLY GLY CYS SER HIS ILE CYS SEQRES 47 A 623 LEU VAL LYS GLY ASP GLY THR THR ARG CYS SER CYS PRO SEQRES 48 A 623 MET HIS LEU VAL LEU LEU GLN ASP GLU LEU SER CYS MODRES 3S8Z ASN A 1039 ASN GLYCOSYLATION SITE MODRES 3S8Z ASN A 926 ASN GLYCOSYLATION SITE MODRES 3S8Z ASN A 859 ASN GLYCOSYLATION SITE MODRES 3S8Z ASN A 692 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG A1244 14 HET NAG A1247 14 HET NAG A1248 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 5(C8 H15 N O6) HELIX 1 1 HIS A 883 SER A 888 5 6 HELIX 2 2 SER A 895 CYS A 900 5 6 HELIX 3 3 ASN A 1198 ARG A 1203 1 6 HELIX 4 4 HIS A 1205 CYS A 1214 5 10 SHEET 1 A 4 ASN A 651 ALA A 655 0 SHEET 2 A 4 ASP A 641 SER A 646 -1 N ARG A 644 O VAL A 654 SHEET 3 A 4 PHE A 633 ARG A 638 -1 N LEU A 634 O ILE A 645 SHEET 4 A 4 ILE A 879 PHE A 882 -1 O PHE A 882 N PHE A 633 SHEET 1 B 4 ALA A 664 ASP A 670 0 SHEET 2 B 4 ARG A 675 ASP A 680 -1 O TYR A 677 N ASP A 668 SHEET 3 B 4 THR A 685 PHE A 690 -1 O ALA A 689 N ILE A 676 SHEET 4 B 4 GLU A 697 VAL A 700 -1 O GLU A 697 N ARG A 688 SHEET 1 C 4 PRO A 707 ASP A 713 0 SHEET 2 C 4 ASN A 718 ASP A 723 -1 O ALA A 722 N GLU A 708 SHEET 3 C 4 ARG A 728 LYS A 733 -1 O SER A 732 N LEU A 719 SHEET 4 C 4 GLN A 740 VAL A 743 -1 O GLN A 740 N VAL A 731 SHEET 1 D 4 PRO A 750 ASP A 756 0 SHEET 2 D 4 PHE A 761 GLU A 766 -1 O THR A 765 N ARG A 751 SHEET 3 D 4 LYS A 772 ALA A 777 -1 O ALA A 776 N MET A 762 SHEET 4 D 4 THR A 784 VAL A 787 -1 O THR A 784 N ARG A 775 SHEET 1 E 4 THR A 797 ASP A 799 0 SHEET 2 E 4 ARG A 804 ASP A 809 -1 O TYR A 806 N THR A 797 SHEET 3 E 4 LEU A 814 ASN A 819 -1 O SER A 818 N LEU A 805 SHEET 4 E 4 GLU A 826 ALA A 829 -1 O ILE A 828 N ILE A 815 SHEET 1 F 4 PRO A 835 GLN A 840 0 SHEET 2 F 4 TYR A 844 ASP A 849 -1 O TYR A 846 N THR A 839 SHEET 3 F 4 SER A 854 ASN A 859 -1 O GLU A 856 N TRP A 847 SHEET 4 F 4 THR A 867 GLN A 870 -1 O GLN A 870 N ILE A 855 SHEET 1 G 2 LEU A 903 ALA A 906 0 SHEET 2 G 2 PHE A 912 GLY A 915 -1 O GLY A 915 N LEU A 903 SHEET 1 H 2 SER A 921 LEU A 922 0 SHEET 2 H 2 CYS A 929 SER A 930 -1 O SER A 930 N SER A 921 SHEET 1 I 4 ILE A 957 ILE A 958 0 SHEET 2 I 4 ILE A 944 MET A 947 -1 N ARG A 946 O ILE A 957 SHEET 3 I 4 PHE A 935 GLN A 940 -1 N PHE A 938 O ASN A 945 SHEET 4 I 4 LEU A1188 VAL A1194 -1 O HIS A1192 N LEU A 937 SHEET 1 J 4 VAL A 967 ASP A 973 0 SHEET 2 J 4 GLN A 978 ASP A 983 -1 O TYR A 980 N ASP A 971 SHEET 3 J 4 MET A 988 GLN A 993 -1 O ALA A 992 N LEU A 979 SHEET 4 J 4 PHE A1000 VAL A1003 -1 O VAL A1002 N ILE A 989 SHEET 1 K 4 PRO A1016 ASP A1022 0 SHEET 2 K 4 TYR A1027 CYS A1032 -1 O TYR A1027 N ASP A1022 SHEET 3 K 4 VAL A1037 ARG A1042 -1 O THR A1041 N ILE A1028 SHEET 4 K 4 SER A1047 LYS A1053 -1 O VAL A1051 N ILE A1038 SHEET 1 L 4 PRO A1059 ASN A1065 0 SHEET 2 L 4 TYR A1070 LEU A1076 -1 O TYR A1072 N VAL A1063 SHEET 3 L 4 PRO A1081 ALA A1087 -1 O ALA A1086 N MET A1071 SHEET 4 L 4 GLU A1094 PHE A1097 -1 O GLU A1094 N ARG A1085 SHEET 1 M 4 PRO A1104 ASP A1110 0 SHEET 2 M 4 LYS A1115 ASP A1120 -1 O PHE A1117 N ALA A1108 SHEET 3 M 4 ARG A1125 ASP A1130 -1 O SER A1129 N LEU A1116 SHEET 4 M 4 ILE A1137 GLU A1140 -1 O GLU A1140 N ILE A1126 SHEET 1 N 4 PRO A1147 VAL A1152 0 SHEET 2 N 4 TRP A1156 ASP A1161 -1 O ILE A1160 N VAL A1148 SHEET 3 N 4 MET A1166 ASP A1171 -1 O ILE A1170 N LEU A1157 SHEET 4 N 4 THR A1179 GLN A1182 -1 O GLN A1182 N ILE A1167 SHEET 1 O 2 ILE A1217 LYS A1221 0 SHEET 2 O 2 THR A1225 SER A1229 -1 O ARG A1227 N LEU A1219 SSBOND 1 CYS A 893 CYS A 904 1555 1555 2.04 SSBOND 2 CYS A 900 CYS A 914 1555 1555 2.03 SSBOND 3 CYS A 916 CYS A 929 1555 1555 2.04 SSBOND 4 CYS A 1207 CYS A 1218 1555 1555 2.04 SSBOND 5 CYS A 1214 CYS A 1228 1555 1555 2.03 SSBOND 6 CYS A 1230 CYS A 1243 1555 1555 2.04 LINK ND2 ASN A 692 C1 NAG A1247 1555 1555 1.46 LINK ND2 ASN A 859 C1 NAG A1248 1555 1555 1.45 LINK ND2 ASN A 926 C1 NAG A1244 1555 1555 1.45 LINK ND2 ASN A1039 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 CRYST1 68.600 83.750 166.620 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006002 0.00000