PDB Short entry for 3S93 HEADER TRANSCRIPTION 31-MAY-11 3S93 TITLE CRYSTAL STRUCTURE OF CONSERVED MOTIF IN TDRD5 CAVEAT 3S93 AUTHOR COMMENT: THE POLYPEPTIDE CHAINS APPEAR TO EXTEND CAVEAT 2 3S93 BEYOND THE EXPECTED TERMINAL GLYCYL RESIDUE. ELECTRON CAVEAT 3 3S93 DENSITY FURTHER SUGGESTS THAT THE EXPECTED N-TERMINAL CAVEAT 4 3S93 RESIDUE, CURRENTLY ASSIGNED AS GLYCYL, IS OF A NONE-GLYCYL CAVEAT 5 3S93 RESIDUE TYPE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUDOR DOMAIN-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TDRD5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR X.CHAO,W.TEMPEL,C.BIAN,J.KANIA,A.K.WERNIMONT,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 2 28-FEB-24 3S93 1 SEQADV REVDAT 1 31-AUG-11 3S93 0 JRNL AUTH X.CHAO,W.TEMPEL,C.BIAN,J.KANIA,A.K.WERNIMONT,C.BOUNTRA, JRNL AUTH 2 J.WEIGELT,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN JRNL TITL CRYSTAL STRUCTURE OF CONSERVED MOTIF IN TDRD5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.320 REMARK 3 FREE R VALUE TEST SET COUNT : 575 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2922 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2835 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2798 REMARK 3 BIN R VALUE (WORKING SET) : 0.2824 REMARK 3 BIN FREE R VALUE : 0.3058 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.24 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 124 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.51050 REMARK 3 B22 (A**2) : -3.30320 REMARK 3 B33 (A**2) : 0.79280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.470 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1225 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1661 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 444 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 23 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 181 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1225 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 168 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1422 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.61 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.8015 8.0628 29.6696 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: -0.1684 REMARK 3 T33: -0.1627 T12: 0.0002 REMARK 3 T13: 0.0746 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 2.8595 L22: 3.5422 REMARK 3 L33: 7.0788 L12: 1.1223 REMARK 3 L13: -2.3830 L23: -0.2450 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.0665 S13: 0.2378 REMARK 3 S21: 0.5479 S22: 0.1196 S23: 0.5254 REMARK 3 S31: -0.0057 S32: -0.5269 S33: -0.1604 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 22.0078 3.6844 -0.3128 REMARK 3 T TENSOR REMARK 3 T11: -0.0317 T22: -0.0416 REMARK 3 T33: -0.1699 T12: -0.0282 REMARK 3 T13: -0.0366 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.6242 L22: 0.9209 REMARK 3 L33: 4.9753 L12: 0.1422 REMARK 3 L13: -2.3236 L23: -0.3711 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: 0.2356 S13: -0.3681 REMARK 3 S21: -0.2115 S22: -0.0282 S23: -0.0150 REMARK 3 S31: 0.6665 S32: -0.1190 S33: 0.0198 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BUCCANEER AND ARP/WARP WERE USED FOR REMARK 3 AUTOMATED MODEL TRACING. DM WAS USED FOR ADDITIONAL PHASE REMARK 3 REFINEMENT. REFMAC AND PHENIX WERE ALSO USED FOR REFINEMENT. REMARK 3 COOT WAS USED FOR INTERACTIVE MODEL COMPLETION. THE MOLPROBITY REMARK 3 SERVER WAS USED TO EVALUATE MODEL GEOMETRY. ABOUT THE DATA SETS: REMARK 3 (NATIVE) DATA SET 1 WAS USED FOR FINAL REFINEMENT. OF THE REMARK 3 AVAILABLE DATA SETS, SET ONE EXTENDED TO THE HIGHEST RESOLUTION. REMARK 3 HOWEVER, DIFFRACTION IMAGES HAD ICE RINGS AND COMPLETENESS WAS < REMARK 3 95%. DATA SET 2 (P212121; A,B,C = 43.00A,43.56A,126.53A; REMARK 3 PROCESSED WITH HKL2000) WAS USED FOR SELENIUM-SAD PHASING. REMARK 3 (NATIVE) DATA SET 3 (P212121; A,B,C = 42.83,43.38,126.72A; REMARK 3 PROCESSED WITH XDS) IS COMPLETE TO 2.5 A RESOLUTION AND WAS USED REMARK 3 DURING INTERMEDIATE STAGES OF MODEL REFINEMENT. REMARK 4 REMARK 4 3S93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-11; 11-MAY-11; 25-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 8.5; 7; 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; CHESS; CLSI REMARK 200 BEAMLINE : NULL; A1; 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 0.977; 0.97949 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN; ADSC Q210 BINNED; REMARK 200 MAR 300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10833 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTAL USED FOR FINAL REFINEMENT: 1.5 REMARK 280 M AMMONIUM PHOSPHATE, 0.1 M BIS-TRIS PROPANE. 1:200 TRYPSIN WAS REMARK 280 ALSO ADDED., PH 8.5, VAPOR DIFFUSION, TEMPERATURE 291K. REMARK 280 SELENOMETHIONYL DERIVATIVE: 1.5 M AMMONIUM PHOSPHAT E, 0.1 M BIS- REMARK 280 TRIS PROPANE. 1:200 TRYPSIN WAS ALSO ADDED., PH 7, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K. CRYSTAL USED FOR PRELIMINARY REMARK 280 REFINEMENT: 25 W/V% PEG-3350, 0.2 M LITHIUM SULFATE, 0.1 M BIS- REMARK 280 TRIS PROPANE. 1:200 TRYPSIN WAS ALSO ADDED., PH 6.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.47000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.47000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 80 REMARK 465 ASP A 81 REMARK 465 GLU A 82 REMARK 465 SER A 83 REMARK 465 THR A 84 REMARK 465 LYS A 85 REMARK 465 GLY A 86 REMARK 465 ILE A 87 REMARK 465 ALA A 88 REMARK 465 SER A 89 REMARK 465 LEU A 90 REMARK 465 VAL A 91 REMARK 465 ALA A 92 REMARK 465 LYS A 93 REMARK 465 GLN A 94 REMARK 465 ARG A 95 REMARK 465 SER A 96 REMARK 465 SER A 97 REMARK 465 HIS A 98 REMARK 465 LYS A 99 REMARK 465 LEU A 100 REMARK 465 ARG A 101 REMARK 465 ASP B 81 REMARK 465 GLU B 82 REMARK 465 SER B 83 REMARK 465 THR B 84 REMARK 465 LYS B 85 REMARK 465 GLY B 86 REMARK 465 ILE B 87 REMARK 465 ALA B 88 REMARK 465 SER B 89 REMARK 465 LEU B 90 REMARK 465 VAL B 91 REMARK 465 ALA B 92 REMARK 465 LYS B 93 REMARK 465 GLN B 94 REMARK 465 ARG B 95 REMARK 465 SER B 96 REMARK 465 SER B 97 REMARK 465 HIS B 98 REMARK 465 LYS B 99 REMARK 465 LEU B 100 REMARK 465 ARG B 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLN A 4 CD OE1 NE2 REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 ARG A 12 CD NE CZ NH1 NH2 REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASP A 24 CG OD1 OD2 REMARK 470 ARG A 65 NE CZ NH1 NH2 REMARK 470 MET B 1 CG SD CE REMARK 470 SER B 2 OG REMARK 470 GLU B 3 CD OE1 OE2 REMARK 470 GLN B 4 CD OE1 NE2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ASP B 24 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 103 UNK UNX B 105 2.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 3S93 A 1 101 UNP Q8NAT2 TDRD5_HUMAN 1 101 DBREF 3S93 B 1 101 UNP Q8NAT2 TDRD5_HUMAN 1 101 SEQADV 3S93 GLY A 0 UNP Q8NAT2 EXPRESSION TAG SEQADV 3S93 GLY B 0 UNP Q8NAT2 EXPRESSION TAG SEQRES 1 A 102 GLY MET SER GLU GLN GLU ARG ILE GLN GLU CYS LEU ARG SEQRES 2 A 102 LYS GLU ILE ARG SER LEU LEU ILE SER THR LYS ASP GLY SEQRES 3 A 102 LEU SER PRO GLN GLU LEU GLU LYS GLU TYR LEU LEU MET SEQRES 4 A 102 VAL GLY ASN HIS LEU PRO LEU ARG ILE LEU GLY TYR ARG SEQRES 5 A 102 SER THR MET GLU LEU VAL LEU ASP MET PRO ASP VAL VAL SEQRES 6 A 102 ARG VAL CYS PRO GLY ALA GLY GLY THR VAL ILE LEU LYS SEQRES 7 A 102 ALA ILE PRO ASP GLU SER THR LYS GLY ILE ALA SER LEU SEQRES 8 A 102 VAL ALA LYS GLN ARG SER SER HIS LYS LEU ARG SEQRES 1 B 102 GLY MET SER GLU GLN GLU ARG ILE GLN GLU CYS LEU ARG SEQRES 2 B 102 LYS GLU ILE ARG SER LEU LEU ILE SER THR LYS ASP GLY SEQRES 3 B 102 LEU SER PRO GLN GLU LEU GLU LYS GLU TYR LEU LEU MET SEQRES 4 B 102 VAL GLY ASN HIS LEU PRO LEU ARG ILE LEU GLY TYR ARG SEQRES 5 B 102 SER THR MET GLU LEU VAL LEU ASP MET PRO ASP VAL VAL SEQRES 6 B 102 ARG VAL CYS PRO GLY ALA GLY GLY THR VAL ILE LEU LYS SEQRES 7 B 102 ALA ILE PRO ASP GLU SER THR LYS GLY ILE ALA SER LEU SEQRES 8 B 102 VAL ALA LYS GLN ARG SER SER HIS LYS LEU ARG HET UNX A 102 1 HET UNX A 103 1 HET UNX A 104 1 HET UNX B 102 1 HET UNX B 103 1 HET UNX B 104 1 HET UNX B 105 1 HET UNX B 106 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 8(X) FORMUL 11 HOH *21(H2 O) HELIX 1 1 GLY A 0 SER A 21 1 22 HELIX 2 2 SER A 27 GLY A 40 1 14 HELIX 3 3 LEU A 45 GLY A 49 5 5 HELIX 4 4 SER A 52 ASP A 59 1 8 HELIX 5 5 GLY A 69 THR A 73 5 5 HELIX 6 6 GLY B 0 SER B 21 1 22 HELIX 7 7 SER B 27 GLY B 40 1 14 HELIX 8 8 LEU B 45 GLY B 49 5 5 HELIX 9 9 SER B 52 ASP B 59 1 8 HELIX 10 10 ALA B 70 GLY B 72 5 3 SHEET 1 A 2 VAL A 64 CYS A 67 0 SHEET 2 A 2 ILE A 75 ALA A 78 -1 O LYS A 77 N ARG A 65 SHEET 1 B 2 VAL B 64 PRO B 68 0 SHEET 2 B 2 VAL B 74 ALA B 78 -1 O LYS B 77 N ARG B 65 CRYST1 42.940 43.330 126.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023288 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007899 0.00000