PDB Short entry for 3S9D HEADER SIGNALING PROTEIN/RECEPTOR 01-JUN-11 3S9D TITLE BINARY COMPLEX BETWEEN IFNA2 AND IFNAR2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON ALPHA-2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: IFNA2 (UNP RESIDUES 24-188); COMPND 5 SYNONYM: IFN-ALPHA-2, INTERFERON ALPHA-A, LEIF A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INTERFERON ALPHA/BETA RECEPTOR 2; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 37-232; COMPND 12 SYNONYM: IFN-R-2, IFN-ALPHA BINDING PROTEIN, IFN-ALPHA/BETA RECEPTOR COMPND 13 2, INTERFERON ALPHA BINDING PROTEIN, TYPE I INTERFERON RECEPTOR 2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IFNA2; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: IFNAR2, IFNABR, IFNARB; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS HUMAN, TYPE I INTERFERONS, IFNA2, IFNAR2, SUB-COMPLEX OF THE KEYWDS 2 INTERFERON SIGNALING COMPLEX, SIGNALING PROTEIN-RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.THOMAS,K.C.GARCIA REVDAT 3 13-SEP-23 3S9D 1 REMARK SEQADV REVDAT 2 21-MAR-12 3S9D 1 JRNL REVDAT 1 31-AUG-11 3S9D 0 JRNL AUTH C.THOMAS,I.MORAGA,D.LEVIN,P.O.KRUTZIK,Y.PODOPLELOVA,A.TREJO, JRNL AUTH 2 C.LEE,G.YARDEN,S.E.VLECK,J.S.GLENN,G.P.NOLAN,J.PIEHLER, JRNL AUTH 3 G.SCHREIBER,K.C.GARCIA JRNL TITL STRUCTURAL LINKAGE BETWEEN LIGAND DISCRIMINATION AND JRNL TITL 2 RECEPTOR ACTIVATION BY TYPE I INTERFERONS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 146 621 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 21854986 JRNL DOI 10.1016/J.CELL.2011.06.048 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 61368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8987 - 4.2956 0.99 5979 315 0.1965 0.1955 REMARK 3 2 4.2956 - 3.4152 0.99 5855 308 0.1780 0.2168 REMARK 3 3 3.4152 - 2.9851 1.00 5852 308 0.1966 0.2171 REMARK 3 4 2.9851 - 2.7129 1.00 5861 309 0.2120 0.2717 REMARK 3 5 2.7129 - 2.5189 1.00 5828 306 0.2110 0.2567 REMARK 3 6 2.5189 - 2.3706 0.99 5788 305 0.2195 0.2714 REMARK 3 7 2.3706 - 2.2521 0.99 5831 307 0.2270 0.2695 REMARK 3 8 2.2521 - 2.1542 0.99 5779 304 0.2305 0.2898 REMARK 3 9 2.1542 - 2.0713 0.99 5763 304 0.2423 0.2888 REMARK 3 10 2.0713 - 1.9999 0.99 5763 303 0.2473 0.2826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 59.98 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : 1.68000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 5175 REMARK 3 ANGLE : 1.140 7030 REMARK 3 CHIRALITY : 0.093 810 REMARK 3 PLANARITY : 0.005 876 REMARK 3 DIHEDRAL : 13.938 1896 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.897 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 53.6000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3S8W, 2HYM, AND 1RH2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 200 MM NASCN, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.00500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 CYS A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 44 REMARK 465 ASN A 45 REMARK 465 GLN A 46 REMARK 465 PHE A 47 REMARK 465 GLN A 48 REMARK 465 LYS A 49 REMARK 465 ALA A 50 REMARK 465 VAL A 99 REMARK 465 ILE A 100 REMARK 465 GLN A 101 REMARK 465 GLY A 102 REMARK 465 VAL A 103 REMARK 465 GLY A 104 REMARK 465 VAL A 105 REMARK 465 THR A 106 REMARK 465 GLU A 107 REMARK 465 THR A 108 REMARK 465 PRO A 109 REMARK 465 LEU A 110 REMARK 465 MET A 111 REMARK 465 LYS A 112 REMARK 465 GLU A 113 REMARK 465 LEU A 157 REMARK 465 GLN A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 ARG A 162 REMARK 465 SER A 163 REMARK 465 LYS A 164 REMARK 465 GLU A 165 REMARK 465 ALA B 7 REMARK 465 ASP B 8 REMARK 465 PRO B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 GLY B 88 REMARK 465 ASN B 89 REMARK 465 ILE B 130 REMARK 465 VAL B 131 REMARK 465 GLU B 132 REMARK 465 GLU B 133 REMARK 465 ILE B 158 REMARK 465 LYS B 159 REMARK 465 GLY B 160 REMARK 465 ASN B 161 REMARK 465 SER B 188 REMARK 465 ASP B 189 REMARK 465 GLU B 190 REMARK 465 PRO B 205 REMARK 465 ALA C -2 REMARK 465 ASP C -1 REMARK 465 PRO C 0 REMARK 465 CYS C 1 REMARK 465 ASP C 2 REMARK 465 LEU C 3 REMARK 465 PRO C 4 REMARK 465 GLN C 5 REMARK 465 THR C 6 REMARK 465 HIS C 7 REMARK 465 GLU C 41 REMARK 465 GLU C 42 REMARK 465 PHE C 43 REMARK 465 GLY C 44 REMARK 465 ASN C 45 REMARK 465 GLN C 46 REMARK 465 PHE C 47 REMARK 465 GLN C 48 REMARK 465 LYS C 49 REMARK 465 ALA C 50 REMARK 465 GLU C 51 REMARK 465 THR C 52 REMARK 465 ILE C 53 REMARK 465 CYS C 98 REMARK 465 VAL C 99 REMARK 465 ILE C 100 REMARK 465 GLN C 101 REMARK 465 GLY C 102 REMARK 465 VAL C 103 REMARK 465 GLY C 104 REMARK 465 VAL C 105 REMARK 465 THR C 106 REMARK 465 GLU C 107 REMARK 465 THR C 108 REMARK 465 PRO C 109 REMARK 465 LEU C 110 REMARK 465 MET C 111 REMARK 465 LYS C 112 REMARK 465 GLU C 113 REMARK 465 ASP C 114 REMARK 465 SER C 115 REMARK 465 ILE C 116 REMARK 465 ASN C 156 REMARK 465 LEU C 157 REMARK 465 GLN C 158 REMARK 465 GLU C 159 REMARK 465 SER C 160 REMARK 465 LEU C 161 REMARK 465 ARG C 162 REMARK 465 SER C 163 REMARK 465 LYS C 164 REMARK 465 GLU C 165 REMARK 465 ALA D 7 REMARK 465 ASP D 8 REMARK 465 PRO D 9 REMARK 465 GLU D 10 REMARK 465 ILE D 130 REMARK 465 VAL D 131 REMARK 465 GLU D 132 REMARK 465 GLU D 133 REMARK 465 GLU D 134 REMARK 465 LEU D 135 REMARK 465 GLY D 160 REMARK 465 ASN D 161 REMARK 465 ASP D 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 8 OG REMARK 470 LEU A 9 CG CD1 CD2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 THR B 90 OG1 CG2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 LEU B 135 CG CD1 CD2 REMARK 470 GLU B 157 CG CD OE1 OE2 REMARK 470 GLN B 191 CG CD OE1 NE2 REMARK 470 GLN C 40 CG CD OE1 NE2 REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 LEU C 117 CG CD1 CD2 REMARK 470 ARG C 120 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 121 CG CD CE NZ REMARK 470 THR C 127 OG1 CG2 REMARK 470 LYS C 131 CG CD CE NZ REMARK 470 LYS C 134 CG CD CE NZ REMARK 470 GLU D 157 CG CD OE1 OE2 REMARK 470 LYS D 159 CG CD CE NZ REMARK 470 GLU D 190 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 148 CA CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 332 O HOH B 320 2656 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 43 CD1 TYR B 43 CE1 -0.098 REMARK 500 GLU D 111 CG GLU D 111 CD -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 60 53.79 37.18 REMARK 500 HIS C 34 132.53 -173.64 REMARK 500 PRO C 39 56.89 -64.31 REMARK 500 PRO D 49 46.85 -78.03 REMARK 500 ASN D 60 51.05 38.43 REMARK 500 SER D 64 33.73 -93.21 REMARK 500 SER D 64 32.38 -92.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S8W RELATED DB: PDB REMARK 900 RELATED ID: 3S98 RELATED DB: PDB DBREF 3S9D A 1 165 UNP P01563 IFNA2_HUMAN 24 188 DBREF 3S9D B 10 205 UNP P48551 INAR2_HUMAN 37 232 DBREF 3S9D C 1 165 UNP P01563 IFNA2_HUMAN 24 188 DBREF 3S9D D 10 205 UNP P48551 INAR2_HUMAN 37 232 SEQADV 3S9D ALA A -2 UNP P01563 CLONING ARTIFACT SEQADV 3S9D ASP A -1 UNP P01563 CLONING ARTIFACT SEQADV 3S9D PRO A 0 UNP P01563 CLONING ARTIFACT SEQADV 3S9D ARG A 23 UNP P01563 LYS 46 CONFLICT SEQADV 3S9D ALA A 57 UNP P01563 HIS 80 ENGINEERED MUTATION SEQADV 3S9D ALA A 58 UNP P01563 GLU 81 ENGINEERED MUTATION SEQADV 3S9D ALA A 61 UNP P01563 GLN 84 ENGINEERED MUTATION SEQADV 3S9D ALA B 7 UNP P48551 CLONING ARTIFACT SEQADV 3S9D ASP B 8 UNP P48551 CLONING ARTIFACT SEQADV 3S9D PRO B 9 UNP P48551 CLONING ARTIFACT SEQADV 3S9D ALA C -2 UNP P01563 CLONING ARTIFACT SEQADV 3S9D ASP C -1 UNP P01563 CLONING ARTIFACT SEQADV 3S9D PRO C 0 UNP P01563 CLONING ARTIFACT SEQADV 3S9D ARG C 23 UNP P01563 LYS 46 CONFLICT SEQADV 3S9D ALA C 57 UNP P01563 HIS 80 ENGINEERED MUTATION SEQADV 3S9D ALA C 58 UNP P01563 GLU 81 ENGINEERED MUTATION SEQADV 3S9D ALA C 61 UNP P01563 GLN 84 ENGINEERED MUTATION SEQADV 3S9D ALA D 7 UNP P48551 CLONING ARTIFACT SEQADV 3S9D ASP D 8 UNP P48551 CLONING ARTIFACT SEQADV 3S9D PRO D 9 UNP P48551 CLONING ARTIFACT SEQRES 1 A 168 ALA ASP PRO CYS ASP LEU PRO GLN THR HIS SER LEU GLY SEQRES 2 A 168 SER ARG ARG THR LEU MET LEU LEU ALA GLN MET ARG ARG SEQRES 3 A 168 ILE SER LEU PHE SER CYS LEU LYS ASP ARG HIS ASP PHE SEQRES 4 A 168 GLY PHE PRO GLN GLU GLU PHE GLY ASN GLN PHE GLN LYS SEQRES 5 A 168 ALA GLU THR ILE PRO VAL LEU ALA ALA MET ILE ALA GLN SEQRES 6 A 168 ILE PHE ASN LEU PHE SER THR LYS ASP SER SER ALA ALA SEQRES 7 A 168 TRP ASP GLU THR LEU LEU ASP LYS PHE TYR THR GLU LEU SEQRES 8 A 168 TYR GLN GLN LEU ASN ASP LEU GLU ALA CYS VAL ILE GLN SEQRES 9 A 168 GLY VAL GLY VAL THR GLU THR PRO LEU MET LYS GLU ASP SEQRES 10 A 168 SER ILE LEU ALA VAL ARG LYS TYR PHE GLN ARG ILE THR SEQRES 11 A 168 LEU TYR LEU LYS GLU LYS LYS TYR SER PRO CYS ALA TRP SEQRES 12 A 168 GLU VAL VAL ARG ALA GLU ILE MET ARG SER PHE SER LEU SEQRES 13 A 168 SER THR ASN LEU GLN GLU SER LEU ARG SER LYS GLU SEQRES 1 B 199 ALA ASP PRO GLU SER CYS THR PHE LYS ILE SER LEU ARG SEQRES 2 B 199 ASN PHE ARG SER ILE LEU SER TRP GLU LEU LYS ASN HIS SEQRES 3 B 199 SER ILE VAL PRO THR HIS TYR THR LEU LEU TYR THR ILE SEQRES 4 B 199 MET SER LYS PRO GLU ASP LEU LYS VAL VAL LYS ASN CYS SEQRES 5 B 199 ALA ASN THR THR ARG SER PHE CYS ASP LEU THR ASP GLU SEQRES 6 B 199 TRP ARG SER THR HIS GLU ALA TYR VAL THR VAL LEU GLU SEQRES 7 B 199 GLY PHE SER GLY ASN THR THR LEU PHE SER CYS SER HIS SEQRES 8 B 199 ASN PHE TRP LEU ALA ILE ASP MET SER PHE GLU PRO PRO SEQRES 9 B 199 GLU PHE GLU ILE VAL GLY PHE THR ASN HIS ILE ASN VAL SEQRES 10 B 199 MET VAL LYS PHE PRO SER ILE VAL GLU GLU GLU LEU GLN SEQRES 11 B 199 PHE ASP LEU SER LEU VAL ILE GLU GLU GLN SER GLU GLY SEQRES 12 B 199 ILE VAL LYS LYS HIS LYS PRO GLU ILE LYS GLY ASN MET SEQRES 13 B 199 SER GLY ASN PHE THR TYR ILE ILE ASP LYS LEU ILE PRO SEQRES 14 B 199 ASN THR ASN TYR CYS VAL SER VAL TYR LEU GLU HIS SER SEQRES 15 B 199 ASP GLU GLN ALA VAL ILE LYS SER PRO LEU LYS CYS THR SEQRES 16 B 199 LEU LEU PRO PRO SEQRES 1 C 168 ALA ASP PRO CYS ASP LEU PRO GLN THR HIS SER LEU GLY SEQRES 2 C 168 SER ARG ARG THR LEU MET LEU LEU ALA GLN MET ARG ARG SEQRES 3 C 168 ILE SER LEU PHE SER CYS LEU LYS ASP ARG HIS ASP PHE SEQRES 4 C 168 GLY PHE PRO GLN GLU GLU PHE GLY ASN GLN PHE GLN LYS SEQRES 5 C 168 ALA GLU THR ILE PRO VAL LEU ALA ALA MET ILE ALA GLN SEQRES 6 C 168 ILE PHE ASN LEU PHE SER THR LYS ASP SER SER ALA ALA SEQRES 7 C 168 TRP ASP GLU THR LEU LEU ASP LYS PHE TYR THR GLU LEU SEQRES 8 C 168 TYR GLN GLN LEU ASN ASP LEU GLU ALA CYS VAL ILE GLN SEQRES 9 C 168 GLY VAL GLY VAL THR GLU THR PRO LEU MET LYS GLU ASP SEQRES 10 C 168 SER ILE LEU ALA VAL ARG LYS TYR PHE GLN ARG ILE THR SEQRES 11 C 168 LEU TYR LEU LYS GLU LYS LYS TYR SER PRO CYS ALA TRP SEQRES 12 C 168 GLU VAL VAL ARG ALA GLU ILE MET ARG SER PHE SER LEU SEQRES 13 C 168 SER THR ASN LEU GLN GLU SER LEU ARG SER LYS GLU SEQRES 1 D 199 ALA ASP PRO GLU SER CYS THR PHE LYS ILE SER LEU ARG SEQRES 2 D 199 ASN PHE ARG SER ILE LEU SER TRP GLU LEU LYS ASN HIS SEQRES 3 D 199 SER ILE VAL PRO THR HIS TYR THR LEU LEU TYR THR ILE SEQRES 4 D 199 MET SER LYS PRO GLU ASP LEU LYS VAL VAL LYS ASN CYS SEQRES 5 D 199 ALA ASN THR THR ARG SER PHE CYS ASP LEU THR ASP GLU SEQRES 6 D 199 TRP ARG SER THR HIS GLU ALA TYR VAL THR VAL LEU GLU SEQRES 7 D 199 GLY PHE SER GLY ASN THR THR LEU PHE SER CYS SER HIS SEQRES 8 D 199 ASN PHE TRP LEU ALA ILE ASP MET SER PHE GLU PRO PRO SEQRES 9 D 199 GLU PHE GLU ILE VAL GLY PHE THR ASN HIS ILE ASN VAL SEQRES 10 D 199 MET VAL LYS PHE PRO SER ILE VAL GLU GLU GLU LEU GLN SEQRES 11 D 199 PHE ASP LEU SER LEU VAL ILE GLU GLU GLN SER GLU GLY SEQRES 12 D 199 ILE VAL LYS LYS HIS LYS PRO GLU ILE LYS GLY ASN MET SEQRES 13 D 199 SER GLY ASN PHE THR TYR ILE ILE ASP LYS LEU ILE PRO SEQRES 14 D 199 ASN THR ASN TYR CYS VAL SER VAL TYR LEU GLU HIS SER SEQRES 15 D 199 ASP GLU GLN ALA VAL ILE LYS SER PRO LEU LYS CYS THR SEQRES 16 D 199 LEU LEU PRO PRO HET CL D 1 1 HETNAM CL CHLORIDE ION FORMUL 5 CL CL 1- FORMUL 6 HOH *360(H2 O) HELIX 1 1 SER A 8 ARG A 22 1 15 HELIX 2 2 LEU A 26 ARG A 33 5 8 HELIX 3 3 PRO A 39 PHE A 43 5 5 HELIX 4 4 THR A 52 PHE A 67 1 16 HELIX 5 5 THR A 69 TRP A 76 1 8 HELIX 6 6 ASP A 77 CYS A 98 1 22 HELIX 7 7 ASP A 114 LYS A 133 1 20 HELIX 8 8 SER A 136 THR A 155 1 20 HELIX 9 9 LYS B 56 ALA B 59 5 4 HELIX 10 10 TRP B 100 MET B 105 1 6 HELIX 11 11 SER C 8 ARG C 22 1 15 HELIX 12 12 LEU C 26 ARG C 33 5 8 HELIX 13 13 PRO C 54 PHE C 67 1 14 HELIX 14 14 THR C 69 TRP C 76 1 8 HELIX 15 15 ASP C 77 ALA C 97 1 21 HELIX 16 16 LEU C 117 LYS C 133 1 17 HELIX 17 17 SER C 136 THR C 155 1 20 HELIX 18 18 LYS D 56 ALA D 59 5 4 HELIX 19 19 TRP D 100 MET D 105 1 6 SHEET 1 A 4 PHE B 65 ASP B 67 0 SHEET 2 A 4 ARG B 22 GLU B 28 -1 N LEU B 25 O CYS B 66 SHEET 3 A 4 THR B 13 ARG B 19 -1 N SER B 17 O ILE B 24 SHEET 4 A 4 SER B 106 PHE B 107 1 O SER B 106 N LEU B 18 SHEET 1 B 4 LYS B 53 VAL B 54 0 SHEET 2 B 4 HIS B 38 ILE B 45 -1 N TYR B 43 O LYS B 53 SHEET 3 B 4 TYR B 79 PHE B 86 -1 O VAL B 82 N LEU B 42 SHEET 4 B 4 LEU B 92 PHE B 99 -1 O CYS B 95 N LEU B 83 SHEET 1 C 3 GLU B 111 GLY B 116 0 SHEET 2 C 3 ILE B 121 LYS B 126 -1 O MET B 124 N GLU B 113 SHEET 3 C 3 ASN B 165 ILE B 170 -1 O TYR B 168 N VAL B 123 SHEET 1 D 4 ILE B 150 HIS B 154 0 SHEET 2 D 4 SER B 140 SER B 147 -1 N ILE B 143 O HIS B 154 SHEET 3 D 4 ASN B 178 GLU B 186 -1 O SER B 182 N GLU B 144 SHEET 4 D 4 LYS B 199 LEU B 202 -1 O LYS B 199 N VAL B 181 SHEET 1 E 4 PHE D 65 ASP D 67 0 SHEET 2 E 4 ARG D 22 LEU D 29 -1 N LEU D 25 O CYS D 66 SHEET 3 E 4 CYS D 12 ARG D 19 -1 N LYS D 15 O SER D 26 SHEET 4 E 4 SER D 106 PHE D 107 1 O SER D 106 N LEU D 18 SHEET 1 F 4 LYS D 53 VAL D 54 0 SHEET 2 F 4 HIS D 38 ILE D 45 -1 N TYR D 43 O LYS D 53 SHEET 3 F 4 TYR D 79 SER D 87 -1 O GLU D 84 N THR D 40 SHEET 4 F 4 THR D 90 PHE D 99 -1 O CYS D 95 N LEU D 83 SHEET 1 G 3 GLU D 111 GLY D 116 0 SHEET 2 G 3 ILE D 121 LYS D 126 -1 O MET D 124 N GLU D 113 SHEET 3 G 3 ASN D 165 ILE D 170 -1 O PHE D 166 N VAL D 125 SHEET 1 H 4 ILE D 150 HIS D 154 0 SHEET 2 H 4 SER D 140 SER D 147 -1 N GLU D 145 O LYS D 152 SHEET 3 H 4 ASN D 178 GLU D 186 -1 O SER D 182 N GLU D 144 SHEET 4 H 4 LYS D 199 LEU D 202 -1 O LYS D 199 N VAL D 181 SSBOND 1 CYS A 29 CYS A 138 1555 1555 2.07 SSBOND 2 CYS B 12 CYS B 95 1555 1555 2.04 SSBOND 3 CYS B 58 CYS B 66 1555 1555 2.05 SSBOND 4 CYS B 180 CYS B 200 1555 1555 2.07 SSBOND 5 CYS C 29 CYS C 138 1555 1555 2.05 SSBOND 6 CYS D 12 CYS D 95 1555 1555 2.06 SSBOND 7 CYS D 58 CYS D 66 1555 1555 2.03 SSBOND 8 CYS D 180 CYS D 200 1555 1555 2.04 SITE 1 AC1 4 HOH C 171 ALA D 78 ASN D 98 PHE D 99 CRYST1 84.650 62.010 88.080 90.00 92.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011813 0.000000 0.000553 0.00000 SCALE2 0.000000 0.016126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011366 0.00000