PDB Short entry for 3SAV HEADER HYDROLASE/DNA 03-JUN-11 3SAV TITLE MUTM SLANTED COMPLEX 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.99.18; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*AP*AP*GP*GP*AP*CP*GP*C)- COMPND 9 3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*TP*GP*CP*GP*T*CP*CP*TP*TP*GP*TP*(CX2) COMPND 14 P*TP*AP*CP*C)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_COMMON: BACILLUS STEAROTHERMOPHILUS; SOURCE 4 ORGANISM_TAXID: 1422; SOURCE 5 GENE: MUTM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC DNA; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: SYNTHETIC DNA KEYWDS DNA GLYCOSYLASE, DNA REPAIR, DAMAGE SEARCH, TRANSLOCATION, DISULFIDE KEYWDS 2 CROSSLINKING, DNA DAMAGE, DNA-BINDING, GLYCOSIDASE, HYDROLASE, KEYWDS 3 LYASE, METAL-BINDING, MULTIFUNCTIONAL ENZYME, ZINC-FINGER, KEYWDS 4 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.C.SPONG,Y.QI,G.L.VERDINE REVDAT 5 13-SEP-23 3SAV 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 3SAV 1 REMARK LINK REVDAT 3 08-NOV-17 3SAV 1 REMARK REVDAT 2 22-FEB-12 3SAV 1 JRNL REVDAT 1 11-JAN-12 3SAV 0 JRNL AUTH Y.QI,K.NAM,M.C.SPONG,A.BANERJEE,R.J.SUNG,M.ZHANG,M.KARPLUS, JRNL AUTH 2 G.L.VERDINE JRNL TITL STRANDWISE TRANSLOCATION OF A DNA GLYCOSYLASE ON UNDAMAGED JRNL TITL 2 DNA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 1086 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22219368 JRNL DOI 10.1073/PNAS.1111237108 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 24024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6725 - 4.2496 0.95 3099 156 0.1762 0.1968 REMARK 3 2 4.2496 - 3.3735 0.99 3073 161 0.1613 0.2065 REMARK 3 3 3.3735 - 2.9472 0.97 3013 158 0.1868 0.2153 REMARK 3 4 2.9472 - 2.6778 0.95 2876 153 0.1881 0.2142 REMARK 3 5 2.6778 - 2.4859 0.92 2831 142 0.1819 0.2411 REMARK 3 6 2.4859 - 2.3393 0.90 2760 129 0.1940 0.2512 REMARK 3 7 2.3393 - 2.2222 0.88 2676 123 0.1948 0.2539 REMARK 3 8 2.2222 - 2.1250 0.84 2540 134 0.2165 0.2731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 65.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17980 REMARK 3 B22 (A**2) : 4.90640 REMARK 3 B33 (A**2) : -4.72660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2555 REMARK 3 ANGLE : 1.034 3558 REMARK 3 CHIRALITY : 0.063 398 REMARK 3 PLANARITY : 0.005 378 REMARK 3 DIHEDRAL : 20.161 986 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -13.8899 51.8345 17.4493 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.2240 REMARK 3 T33: 0.2244 T12: 0.0155 REMARK 3 T13: 0.0194 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: -0.2570 L22: 1.2901 REMARK 3 L33: 1.5189 L12: -0.2397 REMARK 3 L13: 0.3522 L23: -1.3415 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: -0.0745 S13: -0.0314 REMARK 3 S21: -0.0522 S22: -0.0954 S23: -0.0462 REMARK 3 S31: 0.1000 S32: 0.0777 S33: 0.0736 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN C OR CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -3.2328 59.6309 26.8228 REMARK 3 T TENSOR REMARK 3 T11: 0.5296 T22: 0.6555 REMARK 3 T33: 0.5903 T12: -0.0698 REMARK 3 T13: -0.0538 T23: 0.2105 REMARK 3 L TENSOR REMARK 3 L11: 3.2962 L22: 3.9481 REMARK 3 L33: 1.5833 L12: -0.3291 REMARK 3 L13: 2.9131 L23: -1.5924 REMARK 3 S TENSOR REMARK 3 S11: -0.3799 S12: -0.2997 S13: -0.1337 REMARK 3 S21: 1.1719 S22: -0.2039 S23: -0.9546 REMARK 3 S31: -0.3535 S32: 0.1232 S33: 0.5198 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SAV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25440 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.125 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2F5O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8K, SODIUM CACODYLATE, GLYCEROL, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.72750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.10900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.10900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.72750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 217 REMARK 465 GLY A 218 REMARK 465 GLY A 219 REMARK 465 SER A 220 REMARK 465 THR A 221 REMARK 465 VAL A 222 REMARK 465 ARG A 223 REMARK 465 THR A 224 REMARK 465 TYR A 225 REMARK 465 VAL A 226 REMARK 465 ASN A 227 REMARK 465 THR A 228 REMARK 465 GLN A 229 REMARK 465 GLY A 230 REMARK 465 GLU A 231 REMARK 465 ALA A 232 REMARK 465 GLY A 233 REMARK 465 THR A 234 REMARK 465 PHE A 235 REMARK 465 GLN A 236 REMARK 465 HIS A 237 REMARK 465 DC C 14 REMARK 465 DG C 15 REMARK 465 DC C 16 REMARK 465 DT D 1 REMARK 465 DG D 2 REMARK 465 DC D 3 REMARK 465 DG D 4 REMARK 465 DT D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 38 CD NE CZ NH1 NH2 REMARK 470 GLU A 150 CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 198 CE NZ REMARK 470 MET A 216 CG SD CE REMARK 470 HIS A 238 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 DC D 6 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 166 S CX2 D 12 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 10 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 66 -150.40 -104.43 REMARK 500 ARG A 76 -129.49 52.38 REMARK 500 ASP A 110 95.71 -167.41 REMARK 500 GLU A 133 -10.74 83.29 REMARK 500 ARG A 264 158.80 175.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 249 SG REMARK 620 2 CYS A 252 SG 112.7 REMARK 620 3 CYS A 269 SG 114.3 102.5 REMARK 620 4 CYS A 272 SG 129.5 92.0 101.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SAR RELATED DB: PDB REMARK 900 RELATED ID: 3SAS RELATED DB: PDB REMARK 900 RELATED ID: 3SAT RELATED DB: PDB REMARK 900 RELATED ID: 3SAU RELATED DB: PDB REMARK 900 RELATED ID: 3SAW RELATED DB: PDB REMARK 900 RELATED ID: 3SBJ RELATED DB: PDB DBREF 3SAV A 2 274 UNP P84131 P84131_GEOSE 2 274 DBREF 3SAV C 1 16 PDB 3SAV 3SAV 1 16 DBREF 3SAV D 1 16 PDB 3SAV 3SAV 1 16 SEQADV 3SAV GLU A 3 UNP P84131 GLN 3 CONFLICT SEQADV 3SAV CYS A 166 UNP P84131 GLN 166 ENGINEERED MUTATION SEQRES 1 A 273 PRO GLU LEU PRO GLU VAL GLU THR ILE ARG ARG THR LEU SEQRES 2 A 273 LEU PRO LEU ILE VAL GLY LYS THR ILE GLU ASP VAL ARG SEQRES 3 A 273 ILE PHE TRP PRO ASN ILE ILE ARG HIS PRO ARG ASP SER SEQRES 4 A 273 GLU ALA PHE ALA ALA ARG MET ILE GLY GLN THR VAL ARG SEQRES 5 A 273 GLY LEU GLU ARG ARG GLY LYS PHE LEU LYS PHE LEU LEU SEQRES 6 A 273 ASP ARG ASP ALA LEU ILE SER HIS LEU ARG MET GLU GLY SEQRES 7 A 273 ARG TYR ALA VAL ALA SER ALA LEU GLU PRO LEU GLU PRO SEQRES 8 A 273 HIS THR HIS VAL VAL PHE CYS PHE THR ASP GLY SER GLU SEQRES 9 A 273 LEU ARG TYR ARG ASP VAL ARG LYS PHE GLY THR MET HIS SEQRES 10 A 273 VAL TYR ALA LYS GLU GLU ALA ASP ARG ARG PRO PRO LEU SEQRES 11 A 273 ALA GLU LEU GLY PRO GLU PRO LEU SER PRO ALA PHE SER SEQRES 12 A 273 PRO ALA VAL LEU ALA GLU ARG ALA VAL LYS THR LYS ARG SEQRES 13 A 273 SER VAL LYS ALA LEU LEU LEU ASP CYS THR VAL VAL ALA SEQRES 14 A 273 GLY PHE GLY ASN ILE TYR VAL ASP GLU SER LEU PHE ARG SEQRES 15 A 273 ALA GLY ILE LEU PRO GLY ARG PRO ALA ALA SER LEU SER SEQRES 16 A 273 SER LYS GLU ILE GLU ARG LEU HIS GLU GLU MET VAL ALA SEQRES 17 A 273 THR ILE GLY GLU ALA VAL MET LYS GLY GLY SER THR VAL SEQRES 18 A 273 ARG THR TYR VAL ASN THR GLN GLY GLU ALA GLY THR PHE SEQRES 19 A 273 GLN HIS HIS LEU TYR VAL TYR GLY ARG GLN GLY ASN PRO SEQRES 20 A 273 CYS LYS ARG CYS GLY THR PRO ILE GLU LYS THR VAL VAL SEQRES 21 A 273 ALA GLY ARG GLY THR HIS TYR CYS PRO ARG CYS GLN ARG SEQRES 1 C 16 DA DG DG DT DA DG DA DC DA DA DG DG DA SEQRES 2 C 16 DC DG DC SEQRES 1 D 16 DT DG DC DG DT DC DC DT DT DG DT CX2 DT SEQRES 2 D 16 DA DC DC MODRES 3SAV CX2 D 12 DC HET CX2 D 12 22 HET ZN A 300 1 HETNAM CX2 2'-DEOXY-5'-O-{(R)-HYDROXY[(2-SULFANYLETHYL) HETNAM 2 CX2 AMINO]PHOSPHORYL}CYTIDINE HETNAM ZN ZINC ION FORMUL 3 CX2 C11 H19 N4 O6 P S FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *148(H2 O) HELIX 1 1 GLU A 3 VAL A 19 1 17 HELIX 2 2 TRP A 30 ASN A 32 5 3 HELIX 3 3 ASP A 39 ILE A 48 1 10 HELIX 4 4 GLU A 124 ARG A 128 5 5 HELIX 5 5 SER A 144 LYS A 154 1 11 HELIX 6 6 SER A 158 LEU A 164 1 7 HELIX 7 7 GLY A 173 ALA A 184 1 12 HELIX 8 8 PRO A 191 LEU A 195 5 5 HELIX 9 9 SER A 196 MET A 216 1 21 SHEET 1 A 4 ILE A 23 ILE A 28 0 SHEET 2 A 4 THR A 94 PHE A 100 -1 O CYS A 99 N GLU A 24 SHEET 3 A 4 SER A 104 ARG A 109 -1 O TYR A 108 N VAL A 96 SHEET 4 A 4 ARG A 80 SER A 85 -1 N ARG A 80 O ARG A 109 SHEET 1 B 5 ILE A 34 HIS A 36 0 SHEET 2 B 5 THR A 116 ALA A 121 1 O MET A 117 N ARG A 35 SHEET 3 B 5 ASP A 69 HIS A 74 -1 N ILE A 72 O HIS A 118 SHEET 4 B 5 PHE A 61 LEU A 65 -1 N LEU A 62 O SER A 73 SHEET 5 B 5 GLY A 54 ARG A 58 -1 N ARG A 58 O PHE A 61 SHEET 1 C 2 GLU A 257 VAL A 260 0 SHEET 2 C 2 GLY A 265 TYR A 268 -1 O THR A 266 N THR A 259 LINK O3' DT D 11 P CX2 D 12 1555 1555 1.60 LINK SG CYS A 249 ZN ZN A 300 1555 1555 2.35 LINK SG CYS A 252 ZN ZN A 300 1555 1555 2.32 LINK SG CYS A 269 ZN ZN A 300 1555 1555 2.32 LINK SG CYS A 272 ZN ZN A 300 1555 1555 2.70 CISPEP 1 HIS A 36 PRO A 37 0 -5.62 CISPEP 2 PRO A 129 PRO A 130 0 2.93 SITE 1 AC1 4 CYS A 249 CYS A 252 CYS A 269 CYS A 272 CRYST1 45.455 94.240 104.218 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009595 0.00000