PDB Short entry for 3SBW
HEADER    IMMUNE SYSTEM                           06-JUN-11   3SBW              
TITLE     CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE EXTRACELLULAR DOMAINS OF 
TITLE    2 MOUSE PD-1 MUTANT AND HUMAN PD-L1                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 1;                           
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 FRAGMENT: UNP RESIDUES 34-150;                                       
COMPND   5 SYNONYM: PROTEIN PD-1;                                               
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: PROGRAMMED CELL DEATH 1 LIGAND 1;                          
COMPND  10 CHAIN: C;                                                            
COMPND  11 FRAGMENT: UNP RESIDUES 19-239;                                       
COMPND  12 SYNONYM: PD-L1, PDCD1 LIGAND 1, PROGRAMMED DEATH LIGAND 1, B7 HOMOLOG
COMPND  13 1, B7-H1;                                                            
COMPND  14 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: MOUSE;                                              
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 GENE: PDCD1, PD1;                                                    
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS;                       
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET-3A;                                   
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  13 ORGANISM_COMMON: HUMAN;                                              
SOURCE  14 ORGANISM_TAXID: 9606;                                                
SOURCE  15 GENE: CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1;                          
SOURCE  16 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  17 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE  18 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS;                       
SOURCE  19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  20 EXPRESSION_SYSTEM_PLASMID: PET-3A                                    
KEYWDS    PD-1; PD-L1; B7-H1; PROGRAMMED DEATH-1 LIGAND 1, COMPLEX,             
KEYWDS   2 COSTIMULATORY, IMMUNE SYSTEM                                         
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    E.LAZAR-MOLNAR,U.A.RAMAGOPAL,E.CAO,S.G.NATHENSON,S.C.ALMO             
REVDAT   4   03-AUG-16 3SBW    1       REMARK                                   
REVDAT   3   25-DEC-13 3SBW    1       SEQADV                                   
REVDAT   2   18-SEP-13 3SBW    1       REMARK                                   
REVDAT   1   13-JUL-11 3SBW    0                                                
JRNL        AUTH   E.LAZAR-MOLNAR,U.A.RAMAGOPAL,E.CAO,S.G.NATHENSON,S.C.ALMO    
JRNL        TITL   CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE EXTRACELLULAR   
JRNL        TITL 2 DOMAINS OF MOUSE PD-1 MUTANT AND HUMAN PD-L1                 
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.28 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.5.0109                                      
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                               
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 31.42                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 26756                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.221                           
REMARK   3   R VALUE            (WORKING SET) : 0.218                           
REMARK   3   FREE R VALUE                     : 0.270                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1339                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.28                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.34                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1630                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 88.35                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2700                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 91                           
REMARK   3   BIN FREE R VALUE                    : 0.2960                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3429                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 0                                       
REMARK   3   SOLVENT ATOMS            : 130                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 43.35                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.33000                                             
REMARK   3    B22 (A**2) : -1.72000                                             
REMARK   3    B33 (A**2) : 2.05000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): NULL          
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.236         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.170         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.222        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.936                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.899                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3521 ; 0.013 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4792 ; 1.421 ; 1.945       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   432 ; 6.423 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   168 ;37.774 ;24.821       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   598 ;16.418 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    19 ;21.329 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   545 ; 0.101 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2665 ; 0.006 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2166 ; 0.690 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  3520 ; 1.295 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1355 ; 1.840 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1271 ; 2.969 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 3                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A    34        A   145                          
REMARK   3    ORIGIN FOR THE GROUP (A):  -5.4740  -8.1180   4.0440              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0268 T22:   0.0624                                     
REMARK   3      T33:   0.0978 T12:   0.0000                                     
REMARK   3      T13:  -0.0185 T23:  -0.0200                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   3.0615 L22:   2.0291                                     
REMARK   3      L33:   1.3895 L12:  -1.1360                                     
REMARK   3      L13:   0.1172 L23:  -0.0273                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.1619 S12:  -0.1397 S13:   0.1784                       
REMARK   3      S21:   0.1569 S22:   0.0790 S23:  -0.1439                       
REMARK   3      S31:  -0.1357 S32:   0.0797 S33:   0.0829                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   B    34        B   145                          
REMARK   3    ORIGIN FOR THE GROUP (A): -14.9960   2.5790 -17.7160              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0613 T22:   0.0978                                     
REMARK   3      T33:   0.1411 T12:  -0.0089                                     
REMARK   3      T13:  -0.0233 T23:   0.0011                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   3.0584 L22:   2.9170                                     
REMARK   3      L33:   2.8297 L12:   1.1432                                     
REMARK   3      L13:  -0.0287 L23:  -0.1552                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.1110 S12:   0.3169 S13:   0.0544                       
REMARK   3      S21:  -0.3339 S22:   0.1532 S23:   0.2481                       
REMARK   3      S31:  -0.1429 S32:  -0.2117 S33:  -0.0422                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   C    18        C   229                          
REMARK   3    ORIGIN FOR THE GROUP (A):  -8.9860 -11.5460 -49.9210              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.3029 T22:   0.2798                                     
REMARK   3      T33:   0.2441 T12:   0.0148                                     
REMARK   3      T13:   0.0208 T23:  -0.0376                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   2.0882 L22:   0.0340                                     
REMARK   3      L33:   6.1208 L12:  -0.0807                                     
REMARK   3      L13:  -3.3147 L23:   0.0757                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.1196 S12:   0.1244 S13:   0.0595                       
REMARK   3      S21:   0.0630 S22:   0.0344 S23:  -0.0621                       
REMARK   3      S31:   0.2824 S32:  -0.5542 S33:   0.0852                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS U VALUES : WITH TLS ADDED                                 
REMARK   4                                                                      
REMARK   4 3SBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-11.                  
REMARK 100 THE RCSB ID CODE IS RCSB066014.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 21-AUG-07                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 4.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSLS                               
REMARK 200  BEAMLINE                       : X29A                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.071                              
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 26816                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.280                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 6.100                              
REMARK 200  R MERGE                    (I) : 0.09300                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 7.6000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.38                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 6.10                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.72900                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: 1NPU                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 55.52                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5, 20% PEG        
REMARK 280  8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K               
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       28.38900            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       80.43150            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       31.42150            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       80.43150            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       28.38900            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       31.42150            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE CRYSTAL CORRESPONDING TO THIS PARTICULAR PDB HAS THE     
REMARK 300 CORRECT 1:1 PD-1:PD-L1 STRUCTURE, AS WELL AS AN ADDITIONAL           
REMARK 300 ARTIFACTUAL PD-1 THAT IS INCORPORATED INTO THE LATTICE.              
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 16490 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLU A   146                                                      
REMARK 465     ARG A   147                                                      
REMARK 465     ILE A   148                                                      
REMARK 465     LEU A   149                                                      
REMARK 465     GLU A   150                                                      
REMARK 465     GLU B   146                                                      
REMARK 465     ARG B   147                                                      
REMARK 465     ILE B   148                                                      
REMARK 465     LEU B   149                                                      
REMARK 465     GLU B   150                                                      
REMARK 465     LYS C   185                                                      
REMARK 465     ARG C   186                                                      
REMARK 465     GLU C   187                                                      
REMARK 465     GLU C   188                                                      
REMARK 465     PRO C   230                                                      
REMARK 465     LEU C   231                                                      
REMARK 465     ALA C   232                                                      
REMARK 465     HIS C   233                                                      
REMARK 465     PRO C   234                                                      
REMARK 465     PRO C   235                                                      
REMARK 465     ASN C   236                                                      
REMARK 465     GLU C   237                                                      
REMARK 465     ARG C   238                                                      
REMARK 465     THR C   239                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ARG C  82    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LEU C 229    CG   CD1  CD2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    THR A  76      135.02    -38.78                                   
REMARK 500    GLN A  91       -5.75   -158.47                                   
REMARK 500    ARG A 103      -36.42     74.46                                   
REMARK 500    ASN B  74       38.24     72.14                                   
REMARK 500    GLN B  91       -6.40   -147.61                                   
REMARK 500    ARG B 103      -27.45     73.86                                   
REMARK 500    GLU C  45      -72.23    -75.99                                   
REMARK 500    HIS C  69       19.67     48.86                                   
REMARK 500    TYR C  81       62.19   -108.04                                   
REMARK 500    TYR C 118       76.23   -155.90                                   
REMARK 500    ASN C 204       -4.57     82.52                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CHIRAL CENTERS                                             
REMARK 500                                                                      
REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL                     
REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY                      
REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR                        
REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE                                    
REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                            
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE                   
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16)       
REMARK 500                                                                      
REMARK 500  M RES CSSEQI    IMPROPER   EXPECTED   FOUND DETAILS                 
REMARK 500    ASN C 135        24.4      L          L   OUTSIDE RANGE           
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  3SBW A   34   150  UNP    Q02242   PDCD1_MOUSE     34    150             
DBREF  3SBW B   34   150  UNP    Q02242   PDCD1_MOUSE     34    150             
DBREF  3SBW C   19   239  UNP    Q9NZQ7   PD1L1_HUMAN     19    239             
SEQADV 3SBW SER A   83  UNP  Q02242    CYS    83 ENGINEERED MUTATION            
SEQADV 3SBW LEU A  132  UNP  Q02242    ALA   132 ENGINEERED MUTATION            
SEQADV 3SBW SER B   83  UNP  Q02242    CYS    83 ENGINEERED MUTATION            
SEQADV 3SBW LEU B  132  UNP  Q02242    ALA   132 ENGINEERED MUTATION            
SEQADV 3SBW MET C   18  UNP  Q9NZQ7              INITIATING METHIONINE          
SEQRES   1 A  117  SER LEU THR PHE TYR PRO ALA TRP LEU THR VAL SER GLU          
SEQRES   2 A  117  GLY ALA ASN ALA THR PHE THR CYS SER LEU SER ASN TRP          
SEQRES   3 A  117  SER GLU ASP LEU MET LEU ASN TRP ASN ARG LEU SER PRO          
SEQRES   4 A  117  SER ASN GLN THR GLU LYS GLN ALA ALA PHE SER ASN GLY          
SEQRES   5 A  117  LEU SER GLN PRO VAL GLN ASP ALA ARG PHE GLN ILE ILE          
SEQRES   6 A  117  GLN LEU PRO ASN ARG HIS ASP PHE HIS MET ASN ILE LEU          
SEQRES   7 A  117  ASP THR ARG ARG ASN ASP SER GLY ILE TYR LEU CYS GLY          
SEQRES   8 A  117  ALA ILE SER LEU HIS PRO LYS LEU LYS ILE GLU GLU SER          
SEQRES   9 A  117  PRO GLY ALA GLU LEU VAL VAL THR GLU ARG ILE LEU GLU          
SEQRES   1 B  117  SER LEU THR PHE TYR PRO ALA TRP LEU THR VAL SER GLU          
SEQRES   2 B  117  GLY ALA ASN ALA THR PHE THR CYS SER LEU SER ASN TRP          
SEQRES   3 B  117  SER GLU ASP LEU MET LEU ASN TRP ASN ARG LEU SER PRO          
SEQRES   4 B  117  SER ASN GLN THR GLU LYS GLN ALA ALA PHE SER ASN GLY          
SEQRES   5 B  117  LEU SER GLN PRO VAL GLN ASP ALA ARG PHE GLN ILE ILE          
SEQRES   6 B  117  GLN LEU PRO ASN ARG HIS ASP PHE HIS MET ASN ILE LEU          
SEQRES   7 B  117  ASP THR ARG ARG ASN ASP SER GLY ILE TYR LEU CYS GLY          
SEQRES   8 B  117  ALA ILE SER LEU HIS PRO LYS LEU LYS ILE GLU GLU SER          
SEQRES   9 B  117  PRO GLY ALA GLU LEU VAL VAL THR GLU ARG ILE LEU GLU          
SEQRES   1 C  222  MET PHE THR VAL THR VAL PRO LYS ASP LEU TYR VAL VAL          
SEQRES   2 C  222  GLU TYR GLY SER ASN MET THR ILE GLU CYS LYS PHE PRO          
SEQRES   3 C  222  VAL GLU LYS GLN LEU ASP LEU ALA ALA LEU ILE VAL TYR          
SEQRES   4 C  222  TRP GLU MET GLU ASP LYS ASN ILE ILE GLN PHE VAL HIS          
SEQRES   5 C  222  GLY GLU GLU ASP LEU LYS VAL GLN HIS SER SER TYR ARG          
SEQRES   6 C  222  GLN ARG ALA ARG LEU LEU LYS ASP GLN LEU SER LEU GLY          
SEQRES   7 C  222  ASN ALA ALA LEU GLN ILE THR ASP VAL LYS LEU GLN ASP          
SEQRES   8 C  222  ALA GLY VAL TYR ARG CYS MET ILE SER TYR GLY GLY ALA          
SEQRES   9 C  222  ASP TYR LYS ARG ILE THR VAL LYS VAL ASN ALA PRO TYR          
SEQRES  10 C  222  ASN LYS ILE ASN GLN ARG ILE LEU VAL VAL ASP PRO VAL          
SEQRES  11 C  222  THR SER GLU HIS GLU LEU THR CYS GLN ALA GLU GLY TYR          
SEQRES  12 C  222  PRO LYS ALA GLU VAL ILE TRP THR SER SER ASP HIS GLN          
SEQRES  13 C  222  VAL LEU SER GLY LYS THR THR THR THR ASN SER LYS ARG          
SEQRES  14 C  222  GLU GLU LYS LEU PHE ASN VAL THR SER THR LEU ARG ILE          
SEQRES  15 C  222  ASN THR THR THR ASN GLU ILE PHE TYR CYS THR PHE ARG          
SEQRES  16 C  222  ARG LEU ASP PRO GLU GLU ASN HIS THR ALA GLU LEU VAL          
SEQRES  17 C  222  ILE PRO GLU LEU PRO LEU ALA HIS PRO PRO ASN GLU ARG          
SEQRES  18 C  222  THR                                                          
FORMUL   4  HOH   *130(H2 O)                                                    
HELIX    1   1 ARG A  114  SER A  118  5                                   5    
HELIX    2   2 ARG B  114  SER B  118  5                                   5    
HELIX    3   3 HIS C   78  ARG C   82  5                                   5    
HELIX    4   4 LEU C   88  SER C   93  1                                   6    
HELIX    5   5 LYS C  105  ALA C  109  5                                   5    
SHEET    1   A 4 LEU A  35  TYR A  38  0                                        
SHEET    2   A 4 ALA A  50  LEU A  56 -1  O  THR A  53   N  TYR A  38           
SHEET    3   A 4 ASP A 105  ILE A 110 -1  O  PHE A 106   N  CYS A  54           
SHEET    4   A 4 PHE A  95  GLN A  99 -1  N  ILE A  98   O  HIS A 107           
SHEET    1   B 6 TRP A  41  SER A  45  0                                        
SHEET    2   B 6 ALA A 140  THR A 145  1  O  GLU A 141   N  LEU A  42           
SHEET    3   B 6 GLY A 119  SER A 127 -1  N  TYR A 121   O  ALA A 140           
SHEET    4   B 6 MET A  64  ARG A  69 -1  N  ASN A  66   O  GLY A 124           
SHEET    5   B 6 GLU A  77  SER A  83 -1  O  GLN A  79   N  TRP A  67           
SHEET    6   B 6 LEU A  86  PRO A  89 -1  O  GLN A  88   N  ALA A  81           
SHEET    1   C 4 TRP A  41  SER A  45  0                                        
SHEET    2   C 4 ALA A 140  THR A 145  1  O  GLU A 141   N  LEU A  42           
SHEET    3   C 4 GLY A 119  SER A 127 -1  N  TYR A 121   O  ALA A 140           
SHEET    4   C 4 LYS A 133  GLU A 136 -1  O  GLU A 135   N  ALA A 125           
SHEET    1   D 4 LEU B  35  TYR B  38  0                                        
SHEET    2   D 4 ALA B  50  LEU B  56 -1  O  THR B  53   N  TYR B  38           
SHEET    3   D 4 ASP B 105  ILE B 110 -1  O  PHE B 106   N  CYS B  54           
SHEET    4   D 4 PHE B  95  GLN B  99 -1  N  GLN B  96   O  ASN B 109           
SHEET    1   E 6 TRP B  41  SER B  45  0                                        
SHEET    2   E 6 ALA B 140  THR B 145  1  O  GLU B 141   N  LEU B  42           
SHEET    3   E 6 GLY B 119  SER B 127 -1  N  GLY B 119   O  LEU B 142           
SHEET    4   E 6 MET B  64  LEU B  70 -1  N  ASN B  66   O  GLY B 124           
SHEET    5   E 6 THR B  76  SER B  83 -1  O  GLN B  79   N  TRP B  67           
SHEET    6   E 6 LEU B  86  PRO B  89 -1  O  GLN B  88   N  ALA B  81           
SHEET    1   F 4 TRP B  41  SER B  45  0                                        
SHEET    2   F 4 ALA B 140  THR B 145  1  O  GLU B 141   N  LEU B  42           
SHEET    3   F 4 GLY B 119  SER B 127 -1  N  GLY B 119   O  LEU B 142           
SHEET    4   F 4 LYS B 133  GLU B 136 -1  O  LYS B 133   N  SER B 127           
SHEET    1   G 6 LEU C  27  GLU C  31  0                                        
SHEET    2   G 6 ALA C 121  ASN C 131  1  O  LYS C 129   N  TYR C  28           
SHEET    3   G 6 GLY C 110  SER C 117 -1  N  TYR C 112   O  ILE C 126           
SHEET    4   G 6 ILE C  54  MET C  59 -1  N  TYR C  56   O  MET C 115           
SHEET    5   G 6 LYS C  62  VAL C  68 -1  O  PHE C  67   N  VAL C  55           
SHEET    6   G 6 GLU C  71  GLU C  72 -1  O  GLU C  71   N  VAL C  68           
SHEET    1   H 3 MET C  36  LYS C  41  0                                        
SHEET    2   H 3 ASN C  96  ILE C 101 -1  O  ILE C 101   N  MET C  36           
SHEET    3   H 3 ALA C  85  LEU C  87 -1  N  ARG C  86   O  GLN C 100           
SHEET    1   I 4 ASN C 138  ASP C 145  0                                        
SHEET    2   I 4 GLU C 150  GLY C 159 -1  O  GLU C 150   N  VAL C 144           
SHEET    3   I 4 PHE C 191  ASN C 200 -1  O  ILE C 199   N  HIS C 151           
SHEET    4   I 4 LYS C 178  ASN C 183 -1  N  THR C 180   O  THR C 194           
SHEET    1   J 4 VAL C 174  LEU C 175  0                                        
SHEET    2   J 4 GLU C 164  SER C 169 -1  N  TRP C 167   O  LEU C 175           
SHEET    3   J 4 ILE C 206  ARG C 213 -1  O  ARG C 212   N  GLU C 164           
SHEET    4   J 4 GLU C 218  VAL C 225 -1  O  HIS C 220   N  PHE C 211           
SSBOND   1 CYS A   54    CYS A  123                          1555   1555  2.08  
SSBOND   2 CYS B   54    CYS B  123                          1555   1555  2.05  
SSBOND   3 CYS C   40    CYS C  114                          1555   1555  2.05  
SSBOND   4 CYS C  155    CYS C  209                          1555   1555  2.05  
CISPEP   1 TYR A   38    PRO A   39          0         1.49                     
CISPEP   2 HIS A  129    PRO A  130          0         5.45                     
CISPEP   3 TYR B   38    PRO B   39          0        -2.78                     
CISPEP   4 HIS B  129    PRO B  130          0        -5.22                     
CISPEP   5 TYR C  160    PRO C  161          0         1.27                     
CISPEP   6 ASP C  215    PRO C  216          0        -8.04                     
CRYST1   56.778   62.843  160.863  90.00  90.00  90.00 P 21 21 21    8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.017612  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.015913  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.006216        0.00000