PDB Short entry for 3SM4 HEADER HYDROLASE/DNA 27-JUN-11 3SM4 TITLE CRYSTAL STRUCTURE OF THE K131A MUTANT OF LAMBDA EXONUCLEASE IN COMPLEX TITLE 2 WITH A 5'-PHOSPHORYLATED 14-MER/12-MER DUPLEX AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXONUCLEASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.1.11.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*TP*CP*GP*GP*TP*AP*CP*AP*GP*TP*AP*G)-3'; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(P*AP*GP*CP*TP*AP*CP*TP*GP*TP*AP*CP*CP*GP*A)-3'; COMPND 13 CHAIN: E; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: 5'-PHOSPHORYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 GENE: EXO, LAMBDA EXONUCLEASE, RED-ALPHA, REDX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-14B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS HOMOLOGOUS RECOMBINATION, DNA REPAIR, RECOMBINEERING, SINGLE-STRAND KEYWDS 2 ANNEALING, TYPE II RESTRICTION ENDONUCLEASE FOLD, 5'-3' DSDNA KEYWDS 3 EXONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.E.BELL,J.ZHANG REVDAT 4 13-SEP-23 3SM4 1 REMARK SEQADV SHEET LINK REVDAT 3 08-NOV-17 3SM4 1 REMARK REVDAT 2 03-AUG-11 3SM4 1 JRNL REMARK SEQADV SEQRES REVDAT 1 20-JUL-11 3SM4 0 JRNL AUTH J.ZHANG,K.A.MCCABE,C.E.BELL JRNL TITL CRYSTAL STRUCTURES OF {LAMBDA} EXONUCLEASE IN COMPLEX WITH JRNL TITL 2 DNA SUGGEST AN ELECTROSTATIC RATCHET MECHANISM FOR JRNL TITL 3 PROCESSIVITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 11872 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21730170 JRNL DOI 10.1073/PNAS.1103467108 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 65978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3584 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4805 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5476 REMARK 3 NUCLEIC ACID ATOMS : 533 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 584 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.59000 REMARK 3 B22 (A**2) : -7.59000 REMARK 3 B33 (A**2) : 15.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.388 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6218 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8517 ; 0.919 ; 2.054 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 679 ; 4.536 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;29.863 ;23.491 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 958 ;12.929 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;15.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4593 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.563 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H-K, K, -L REMARK 3 TWIN FRACTION : 0.437 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 27 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8290 -36.2640 -10.6730 REMARK 3 T TENSOR REMARK 3 T11: 0.2737 T22: 0.1326 REMARK 3 T33: 0.3895 T12: 0.0658 REMARK 3 T13: -0.0196 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.3713 L22: 4.4758 REMARK 3 L33: 10.5555 L12: 1.3179 REMARK 3 L13: 1.3319 L23: 0.7379 REMARK 3 S TENSOR REMARK 3 S11: 0.2306 S12: 0.1331 S13: 0.0393 REMARK 3 S21: -0.6716 S22: 0.0404 S23: -0.1121 REMARK 3 S31: 0.3846 S32: 0.5155 S33: -0.2710 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): -19.5630 -20.7260 4.2850 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.0410 REMARK 3 T33: 0.1406 T12: 0.0262 REMARK 3 T13: 0.0194 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.0740 L22: 2.0152 REMARK 3 L33: 1.6153 L12: -0.0098 REMARK 3 L13: 0.8875 L23: 0.0372 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.0301 S13: -0.0614 REMARK 3 S21: 0.0062 S22: 0.0362 S23: -0.0609 REMARK 3 S31: -0.0658 S32: 0.1801 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5000 -31.5220 -10.7670 REMARK 3 T TENSOR REMARK 3 T11: 0.0464 T22: 0.0734 REMARK 3 T33: 0.1260 T12: 0.0146 REMARK 3 T13: -0.0167 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.6025 L22: 8.1018 REMARK 3 L33: 2.6211 L12: -1.7130 REMARK 3 L13: 0.9085 L23: -3.4366 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.1165 S13: -0.0931 REMARK 3 S21: -0.0519 S22: 0.0727 S23: 0.5550 REMARK 3 S31: -0.0551 S32: -0.2318 S33: -0.1066 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9340 -37.7850 -1.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.0528 REMARK 3 T33: 0.2019 T12: 0.0164 REMARK 3 T13: -0.0309 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.9904 L22: 1.1659 REMARK 3 L33: 0.4987 L12: -1.3830 REMARK 3 L13: -0.9060 L23: 0.1916 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: 0.1137 S13: -0.4503 REMARK 3 S21: -0.1025 S22: -0.1390 S23: 0.1835 REMARK 3 S31: 0.1547 S32: -0.0480 S33: 0.0669 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0480 -30.0940 0.9190 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.0543 REMARK 3 T33: 0.1214 T12: 0.0317 REMARK 3 T13: 0.0114 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.0900 L22: 4.3935 REMARK 3 L33: -0.0793 L12: 1.5804 REMARK 3 L13: -0.0167 L23: -0.2272 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: -0.1305 S13: -0.0124 REMARK 3 S21: 0.0871 S22: -0.0453 S23: 0.1248 REMARK 3 S31: 0.0747 S32: -0.0005 S33: -0.0053 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1830 -34.7530 7.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.0530 T22: 0.0264 REMARK 3 T33: 0.1083 T12: 0.0152 REMARK 3 T13: 0.0016 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 5.1444 L22: 2.5559 REMARK 3 L33: 3.6068 L12: -0.6185 REMARK 3 L13: -0.8503 L23: 0.1459 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.1122 S13: 0.0079 REMARK 3 S21: -0.0054 S22: 0.0047 S23: 0.0763 REMARK 3 S31: -0.0366 S32: -0.0121 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9910 -29.3390 4.6490 REMARK 3 T TENSOR REMARK 3 T11: 0.0805 T22: 0.0242 REMARK 3 T33: 0.1055 T12: 0.0077 REMARK 3 T13: -0.0179 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.5104 L22: 0.7099 REMARK 3 L33: 0.4222 L12: -0.4923 REMARK 3 L13: -0.4717 L23: -0.1904 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: -0.1716 S13: -0.1863 REMARK 3 S21: 0.0715 S22: 0.0704 S23: 0.1275 REMARK 3 S31: 0.0022 S32: -0.0271 S33: -0.0111 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6910 -12.6920 -9.7130 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: 0.1151 REMARK 3 T33: 0.2094 T12: 0.0528 REMARK 3 T13: -0.0050 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 4.1418 L22: 3.3146 REMARK 3 L33: 0.8794 L12: 3.0876 REMARK 3 L13: 1.0501 L23: 1.4879 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: 0.0377 S13: -0.2041 REMARK 3 S21: 0.1451 S22: 0.0269 S23: -0.4244 REMARK 3 S31: 0.2470 S32: 0.1927 S33: -0.0881 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 14 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9080 -9.2790 -11.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.1098 REMARK 3 T33: 0.1642 T12: 0.0384 REMARK 3 T13: -0.0127 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 3.0976 L22: 4.0057 REMARK 3 L33: 8.5300 L12: 1.2989 REMARK 3 L13: -0.1450 L23: -1.6286 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: 0.4799 S13: 0.2562 REMARK 3 S21: -0.5901 S22: 0.0436 S23: 0.0234 REMARK 3 S31: -0.3310 S32: 0.1041 S33: 0.0018 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 49 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2540 -8.8420 9.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.1122 REMARK 3 T33: 0.1521 T12: -0.0044 REMARK 3 T13: 0.0149 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.3888 L22: 2.1999 REMARK 3 L33: 12.8536 L12: 1.1482 REMARK 3 L13: -2.9402 L23: -4.3687 REMARK 3 S TENSOR REMARK 3 S11: 0.0943 S12: -0.0697 S13: 0.1992 REMARK 3 S21: 0.3782 S22: 0.1387 S23: 0.2069 REMARK 3 S31: -0.0040 S32: -0.5431 S33: -0.2330 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 71 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7230 -17.2420 1.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.0114 REMARK 3 T33: 0.0816 T12: 0.0068 REMARK 3 T13: -0.0128 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.8303 L22: 3.2361 REMARK 3 L33: 4.9283 L12: -0.6499 REMARK 3 L13: -1.0730 L23: 3.4761 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.0879 S13: -0.0405 REMARK 3 S21: 0.1076 S22: -0.0062 S23: -0.0329 REMARK 3 S31: 0.1066 S32: -0.0658 S33: -0.0194 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 72 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8350 1.5970 -13.6050 REMARK 3 T TENSOR REMARK 3 T11: 0.1418 T22: 0.1021 REMARK 3 T33: 0.1397 T12: 0.0721 REMARK 3 T13: -0.0094 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.4337 L22: 6.5378 REMARK 3 L33: 1.1885 L12: 3.9057 REMARK 3 L13: -0.2970 L23: -0.5339 REMARK 3 S TENSOR REMARK 3 S11: -0.1407 S12: 0.2574 S13: -0.0133 REMARK 3 S21: -0.5253 S22: 0.1609 S23: -0.0961 REMARK 3 S31: 0.1770 S32: -0.0441 S33: -0.0202 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 91 B 148 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1010 5.5120 -4.2550 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.0310 REMARK 3 T33: 0.1421 T12: -0.0082 REMARK 3 T13: -0.0133 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.4473 L22: 1.5582 REMARK 3 L33: 0.3531 L12: -0.9257 REMARK 3 L13: 0.3255 L23: -0.1028 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.0506 S13: 0.2104 REMARK 3 S21: -0.0253 S22: 0.0530 S23: -0.1796 REMARK 3 S31: -0.0473 S32: 0.0655 S33: 0.0103 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 149 B 226 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8490 -2.5940 2.0180 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.0456 REMARK 3 T33: 0.0967 T12: 0.0184 REMARK 3 T13: -0.0206 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.8704 L22: 1.6523 REMARK 3 L33: 0.3689 L12: -0.4345 REMARK 3 L13: 0.1918 L23: -0.1860 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: -0.0957 S13: 0.0788 REMARK 3 S21: 0.1598 S22: 0.0701 S23: -0.1081 REMARK 3 S31: 0.0080 S32: 0.0222 S33: -0.0124 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -2 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9730 26.4680 -10.2100 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1156 REMARK 3 T33: 0.1875 T12: 0.0484 REMARK 3 T13: -0.0262 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 4.8991 L22: 3.4779 REMARK 3 L33: 4.6794 L12: -3.3860 REMARK 3 L13: -4.2081 L23: 3.8830 REMARK 3 S TENSOR REMARK 3 S11: 0.1443 S12: -0.0869 S13: 0.2918 REMARK 3 S21: -0.1326 S22: -0.0194 S23: -0.0302 REMARK 3 S31: -0.0809 S32: 0.3106 S33: -0.1250 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 15 C 52 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4990 11.2350 0.3730 REMARK 3 T TENSOR REMARK 3 T11: 0.0242 T22: 0.0597 REMARK 3 T33: 0.1756 T12: 0.0352 REMARK 3 T13: 0.0120 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.8145 L22: 1.9251 REMARK 3 L33: 5.4842 L12: -0.7307 REMARK 3 L13: 1.1979 L23: -1.9147 REMARK 3 S TENSOR REMARK 3 S11: 0.0866 S12: 0.0216 S13: -0.0729 REMARK 3 S21: -0.0745 S22: -0.0585 S23: 0.0537 REMARK 3 S31: 0.1804 S32: 0.0151 S33: -0.0281 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 53 C 72 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5950 12.1160 -2.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.0130 REMARK 3 T33: 0.1693 T12: 0.0134 REMARK 3 T13: 0.0012 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.4880 L22: 3.3090 REMARK 3 L33: 8.7807 L12: -0.0572 REMARK 3 L13: -1.2446 L23: -1.2413 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.0564 S13: -0.1810 REMARK 3 S21: -0.0330 S22: -0.0502 S23: 0.0967 REMARK 3 S31: 0.2615 S32: -0.1248 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 73 C 128 REMARK 3 ORIGIN FOR THE GROUP (A): -29.5910 7.0360 -7.1040 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.0730 REMARK 3 T33: 0.1678 T12: 0.0131 REMARK 3 T13: 0.0054 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.4401 L22: 2.0409 REMARK 3 L33: 0.5020 L12: 0.9217 REMARK 3 L13: 0.1392 L23: 0.2063 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.0694 S13: 0.0605 REMARK 3 S21: -0.1052 S22: 0.0465 S23: 0.0572 REMARK 3 S31: 0.0088 S32: -0.0213 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 129 C 147 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3430 -6.7770 1.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.0406 T22: 0.0184 REMARK 3 T33: 0.1293 T12: -0.0251 REMARK 3 T13: -0.0108 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.6803 L22: 3.2896 REMARK 3 L33: 2.2012 L12: -1.6362 REMARK 3 L13: -0.0813 L23: -1.0990 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: -0.0457 S13: 0.0108 REMARK 3 S21: 0.2728 S22: -0.0750 S23: -0.2167 REMARK 3 S31: -0.1275 S32: 0.0098 S33: 0.1240 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 148 C 197 REMARK 3 ORIGIN FOR THE GROUP (A): -30.0660 4.0970 4.1350 REMARK 3 T TENSOR REMARK 3 T11: 0.0521 T22: 0.0259 REMARK 3 T33: 0.1187 T12: 0.0248 REMARK 3 T13: 0.0192 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.9983 L22: 3.4060 REMARK 3 L33: 1.2735 L12: 0.6530 REMARK 3 L13: 0.3561 L23: 1.5737 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: -0.0471 S13: 0.0354 REMARK 3 S21: 0.2467 S22: -0.0021 S23: 0.1189 REMARK 3 S31: 0.1246 S32: -0.0310 S33: -0.0406 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 198 C 226 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1020 22.1590 2.2390 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0449 REMARK 3 T33: 0.1781 T12: -0.0076 REMARK 3 T13: -0.0296 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 5.8572 L22: 1.9876 REMARK 3 L33: 1.6084 L12: 1.4782 REMARK 3 L13: -2.4650 L23: -0.6350 REMARK 3 S TENSOR REMARK 3 S11: 0.0701 S12: -0.2976 S13: 0.1589 REMARK 3 S21: 0.0827 S22: -0.0648 S23: -0.0846 REMARK 3 S31: -0.1872 S32: 0.2319 S33: -0.0053 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 4 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0940 -3.9910 19.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1179 REMARK 3 T33: 0.1163 T12: -0.0273 REMARK 3 T13: 0.0120 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 7.1011 L22: 2.6277 REMARK 3 L33: 3.9151 L12: 1.6004 REMARK 3 L13: -2.0307 L23: -0.9968 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.0820 S13: 0.2835 REMARK 3 S21: -0.1753 S22: 0.1410 S23: 0.4277 REMARK 3 S31: 0.1002 S32: -0.4537 S33: -0.1194 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 8 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3180 -2.4410 11.4640 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1640 REMARK 3 T33: 0.1612 T12: 0.0061 REMARK 3 T13: 0.0181 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 3.0457 L22: 3.6922 REMARK 3 L33: 2.8954 L12: -0.5916 REMARK 3 L13: -3.7658 L23: 1.1907 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.2209 S13: 0.0507 REMARK 3 S21: 0.1041 S22: 0.0217 S23: -0.3650 REMARK 3 S31: 0.0281 S32: -0.1766 S33: -0.0232 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 9 D 12 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0450 -10.7920 -0.8490 REMARK 3 T TENSOR REMARK 3 T11: 0.0626 T22: 0.1257 REMARK 3 T33: 0.1678 T12: -0.0061 REMARK 3 T13: 0.0041 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.2683 L22: 2.0547 REMARK 3 L33: -0.9073 L12: -0.3335 REMARK 3 L13: 0.0609 L23: -0.5989 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.0691 S13: -0.0313 REMARK 3 S21: -0.0676 S22: 0.0929 S23: 0.1837 REMARK 3 S31: 0.0313 S32: -0.0851 S33: -0.0570 REMARK 3 REMARK 3 TLS GROUP : 25 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 4 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9470 -2.6850 -5.9940 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.0582 REMARK 3 T33: 0.1491 T12: 0.0100 REMARK 3 T13: -0.0017 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 9.1926 L22: 0.1350 REMARK 3 L33: 1.4718 L12: 1.1738 REMARK 3 L13: -1.7761 L23: 0.5530 REMARK 3 S TENSOR REMARK 3 S11: -0.1604 S12: 0.2491 S13: -0.4208 REMARK 3 S21: 0.0388 S22: -0.0014 S23: 0.0055 REMARK 3 S31: 0.1563 S32: -0.0640 S33: 0.1617 REMARK 3 REMARK 3 TLS GROUP : 26 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 5 E 8 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4760 -7.1170 2.3460 REMARK 3 T TENSOR REMARK 3 T11: 0.3551 T22: 0.2610 REMARK 3 T33: 0.3843 T12: 0.0053 REMARK 3 T13: 0.0724 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 3.4392 L22: 1.5756 REMARK 3 L33: 9.4698 L12: 0.1197 REMARK 3 L13: -1.8500 L23: -6.5137 REMARK 3 S TENSOR REMARK 3 S11: 0.4896 S12: 0.0312 S13: 0.7160 REMARK 3 S21: -0.2919 S22: 0.0687 S23: 0.5523 REMARK 3 S31: 0.5172 S32: -0.2819 S33: -0.5582 REMARK 3 REMARK 3 TLS GROUP : 27 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 9 E 14 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8080 -3.9930 20.5650 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.1396 REMARK 3 T33: 0.1411 T12: -0.0269 REMARK 3 T13: 0.0006 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 5.4040 L22: 5.8755 REMARK 3 L33: 7.9891 L12: 1.5093 REMARK 3 L13: 0.6675 L23: 1.5341 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.0162 S13: -0.0914 REMARK 3 S21: 0.2813 S22: 0.0688 S23: -0.3402 REMARK 3 S31: 0.1869 S32: 0.2504 S33: 0.0011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3SM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65978 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 67.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1AVQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG3350, 0.2 M SODIUM BROMIDE, 5 REMARK 280 MM MAGNESIUM CHLORIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 165.02267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.51133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.76700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.25567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 206.27833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY B -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA E 1 P DA E 1 OP3 -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC D 7 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT D 10 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG D 12 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC E 6 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 16 -126.74 -81.05 REMARK 500 VAL A 17 97.46 57.93 REMARK 500 GLN A 19 120.34 67.10 REMARK 500 ARG B 15 -32.21 93.72 REMARK 500 GLN B 19 99.81 48.79 REMARK 500 PRO B 104 -164.27 -73.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 227 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 119 OD2 REMARK 620 2 GLU B 129 OE2 85.4 REMARK 620 3 LEU B 130 O 89.1 86.4 REMARK 620 4 HOH B 550 O 84.7 169.8 90.9 REMARK 620 5 DG E 2 OP1 93.6 95.2 177.0 88.0 REMARK 620 6 HOH E 543 O 166.6 81.5 87.5 108.2 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 15 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 119 OD1 REMARK 620 2 HOH B 277 O 101.2 REMARK 620 3 HOH B 305 O 110.5 79.9 REMARK 620 4 HOH B 310 O 90.0 168.6 94.7 REMARK 620 5 DA E 1 O3' 148.4 90.5 100.3 80.5 REMARK 620 6 DG E 2 OP1 88.6 104.6 159.3 77.0 59.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 15 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SLP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LAMBDA EXONUCLEASE IN COMPLEX WITH A 12 BP REMARK 900 SYMMETRIC DNA DUPLEX DBREF 3SM4 A 1 226 UNP P03697 EXO_LAMBD 1 226 DBREF 3SM4 B 1 226 UNP P03697 EXO_LAMBD 1 226 DBREF 3SM4 C 1 226 UNP P03697 EXO_LAMBD 1 226 DBREF 3SM4 D 1 12 PDB 3SM4 3SM4 1 12 DBREF 3SM4 E 1 14 PDB 3SM4 3SM4 1 14 SEQADV 3SM4 GLY A -2 UNP P03697 EXPRESSION TAG SEQADV 3SM4 SER A -1 UNP P03697 EXPRESSION TAG SEQADV 3SM4 HIS A 0 UNP P03697 EXPRESSION TAG SEQADV 3SM4 ALA A 131 UNP P03697 LYS 131 ENGINEERED MUTATION SEQADV 3SM4 GLY B -2 UNP P03697 EXPRESSION TAG SEQADV 3SM4 SER B -1 UNP P03697 EXPRESSION TAG SEQADV 3SM4 HIS B 0 UNP P03697 EXPRESSION TAG SEQADV 3SM4 ALA B 131 UNP P03697 LYS 131 ENGINEERED MUTATION SEQADV 3SM4 GLY C -2 UNP P03697 EXPRESSION TAG SEQADV 3SM4 SER C -1 UNP P03697 EXPRESSION TAG SEQADV 3SM4 HIS C 0 UNP P03697 EXPRESSION TAG SEQADV 3SM4 ALA C 131 UNP P03697 LYS 131 ENGINEERED MUTATION SEQRES 1 A 229 GLY SER HIS MET THR PRO ASP ILE ILE LEU GLN ARG THR SEQRES 2 A 229 GLY ILE ASP VAL ARG ALA VAL GLU GLN GLY ASP ASP ALA SEQRES 3 A 229 TRP HIS LYS LEU ARG LEU GLY VAL ILE THR ALA SER GLU SEQRES 4 A 229 VAL HIS ASN VAL ILE ALA LYS PRO ARG SER GLY LYS LYS SEQRES 5 A 229 TRP PRO ASP MET LYS MET SER TYR PHE HIS THR LEU LEU SEQRES 6 A 229 ALA GLU VAL CYS THR GLY VAL ALA PRO GLU VAL ASN ALA SEQRES 7 A 229 LYS ALA LEU ALA TRP GLY LYS GLN TYR GLU ASN ASP ALA SEQRES 8 A 229 ARG THR LEU PHE GLU PHE THR SER GLY VAL ASN VAL THR SEQRES 9 A 229 GLU SER PRO ILE ILE TYR ARG ASP GLU SER MET ARG THR SEQRES 10 A 229 ALA CYS SER PRO ASP GLY LEU CYS SER ASP GLY ASN GLY SEQRES 11 A 229 LEU GLU LEU ALA CYS PRO PHE THR SER ARG ASP PHE MET SEQRES 12 A 229 LYS PHE ARG LEU GLY GLY PHE GLU ALA ILE LYS SER ALA SEQRES 13 A 229 TYR MET ALA GLN VAL GLN TYR SER MET TRP VAL THR ARG SEQRES 14 A 229 LYS ASN ALA TRP TYR PHE ALA ASN TYR ASP PRO ARG MET SEQRES 15 A 229 LYS ARG GLU GLY LEU HIS TYR VAL VAL ILE GLU ARG ASP SEQRES 16 A 229 GLU LYS TYR MET ALA SER PHE ASP GLU ILE VAL PRO GLU SEQRES 17 A 229 PHE ILE GLU LYS MET ASP GLU ALA LEU ALA GLU ILE GLY SEQRES 18 A 229 PHE VAL PHE GLY GLU GLN TRP ARG SEQRES 1 B 229 GLY SER HIS MET THR PRO ASP ILE ILE LEU GLN ARG THR SEQRES 2 B 229 GLY ILE ASP VAL ARG ALA VAL GLU GLN GLY ASP ASP ALA SEQRES 3 B 229 TRP HIS LYS LEU ARG LEU GLY VAL ILE THR ALA SER GLU SEQRES 4 B 229 VAL HIS ASN VAL ILE ALA LYS PRO ARG SER GLY LYS LYS SEQRES 5 B 229 TRP PRO ASP MET LYS MET SER TYR PHE HIS THR LEU LEU SEQRES 6 B 229 ALA GLU VAL CYS THR GLY VAL ALA PRO GLU VAL ASN ALA SEQRES 7 B 229 LYS ALA LEU ALA TRP GLY LYS GLN TYR GLU ASN ASP ALA SEQRES 8 B 229 ARG THR LEU PHE GLU PHE THR SER GLY VAL ASN VAL THR SEQRES 9 B 229 GLU SER PRO ILE ILE TYR ARG ASP GLU SER MET ARG THR SEQRES 10 B 229 ALA CYS SER PRO ASP GLY LEU CYS SER ASP GLY ASN GLY SEQRES 11 B 229 LEU GLU LEU ALA CYS PRO PHE THR SER ARG ASP PHE MET SEQRES 12 B 229 LYS PHE ARG LEU GLY GLY PHE GLU ALA ILE LYS SER ALA SEQRES 13 B 229 TYR MET ALA GLN VAL GLN TYR SER MET TRP VAL THR ARG SEQRES 14 B 229 LYS ASN ALA TRP TYR PHE ALA ASN TYR ASP PRO ARG MET SEQRES 15 B 229 LYS ARG GLU GLY LEU HIS TYR VAL VAL ILE GLU ARG ASP SEQRES 16 B 229 GLU LYS TYR MET ALA SER PHE ASP GLU ILE VAL PRO GLU SEQRES 17 B 229 PHE ILE GLU LYS MET ASP GLU ALA LEU ALA GLU ILE GLY SEQRES 18 B 229 PHE VAL PHE GLY GLU GLN TRP ARG SEQRES 1 C 229 GLY SER HIS MET THR PRO ASP ILE ILE LEU GLN ARG THR SEQRES 2 C 229 GLY ILE ASP VAL ARG ALA VAL GLU GLN GLY ASP ASP ALA SEQRES 3 C 229 TRP HIS LYS LEU ARG LEU GLY VAL ILE THR ALA SER GLU SEQRES 4 C 229 VAL HIS ASN VAL ILE ALA LYS PRO ARG SER GLY LYS LYS SEQRES 5 C 229 TRP PRO ASP MET LYS MET SER TYR PHE HIS THR LEU LEU SEQRES 6 C 229 ALA GLU VAL CYS THR GLY VAL ALA PRO GLU VAL ASN ALA SEQRES 7 C 229 LYS ALA LEU ALA TRP GLY LYS GLN TYR GLU ASN ASP ALA SEQRES 8 C 229 ARG THR LEU PHE GLU PHE THR SER GLY VAL ASN VAL THR SEQRES 9 C 229 GLU SER PRO ILE ILE TYR ARG ASP GLU SER MET ARG THR SEQRES 10 C 229 ALA CYS SER PRO ASP GLY LEU CYS SER ASP GLY ASN GLY SEQRES 11 C 229 LEU GLU LEU ALA CYS PRO PHE THR SER ARG ASP PHE MET SEQRES 12 C 229 LYS PHE ARG LEU GLY GLY PHE GLU ALA ILE LYS SER ALA SEQRES 13 C 229 TYR MET ALA GLN VAL GLN TYR SER MET TRP VAL THR ARG SEQRES 14 C 229 LYS ASN ALA TRP TYR PHE ALA ASN TYR ASP PRO ARG MET SEQRES 15 C 229 LYS ARG GLU GLY LEU HIS TYR VAL VAL ILE GLU ARG ASP SEQRES 16 C 229 GLU LYS TYR MET ALA SER PHE ASP GLU ILE VAL PRO GLU SEQRES 17 C 229 PHE ILE GLU LYS MET ASP GLU ALA LEU ALA GLU ILE GLY SEQRES 18 C 229 PHE VAL PHE GLY GLU GLN TRP ARG SEQRES 1 D 12 DT DC DG DG DT DA DC DA DG DT DA DG SEQRES 1 E 14 DA DG DC DT DA DC DT DG DT DA DC DC DG SEQRES 2 E 14 DA HET PO4 A 227 5 HET CL A 228 1 HET CL A 229 1 HET MG B 227 1 HET PO4 C 227 5 HET MG E 15 1 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 6 PO4 2(O4 P 3-) FORMUL 7 CL 2(CL 1-) FORMUL 9 MG 2(MG 2+) FORMUL 12 HOH *584(H2 O) HELIX 1 1 THR A 2 GLY A 11 1 10 HELIX 2 2 ASP A 21 ARG A 28 1 8 HELIX 3 3 VAL A 37 ALA A 42 1 6 HELIX 4 4 PRO A 51 GLY A 68 1 18 HELIX 5 5 ASN A 74 GLY A 97 1 24 HELIX 6 6 THR A 135 GLY A 146 1 12 HELIX 7 7 PHE A 147 ALA A 149 5 3 HELIX 8 8 ILE A 150 ARG A 166 1 17 HELIX 9 9 ASP A 192 ILE A 217 1 26 HELIX 10 10 GLY A 222 ARG A 226 5 5 HELIX 11 11 THR B 2 GLY B 11 1 10 HELIX 12 12 ASP B 21 ARG B 28 1 8 HELIX 13 13 SER B 35 VAL B 40 5 6 HELIX 14 14 PRO B 51 GLY B 68 1 18 HELIX 15 15 ALA B 75 GLY B 97 1 23 HELIX 16 16 THR B 135 GLY B 146 1 12 HELIX 17 17 PHE B 147 ILE B 150 5 4 HELIX 18 18 LYS B 151 ARG B 166 1 16 HELIX 19 19 ASP B 192 ILE B 217 1 26 HELIX 20 20 GLY B 222 ARG B 226 5 5 HELIX 21 21 THR C 2 GLY C 11 1 10 HELIX 22 22 ASP C 13 VAL C 17 5 5 HELIX 23 23 ASP C 21 ARG C 28 1 8 HELIX 24 24 SER C 35 VAL C 40 5 6 HELIX 25 25 PRO C 51 GLY C 68 1 18 HELIX 26 26 ASN C 74 TYR C 84 1 11 HELIX 27 27 TYR C 84 GLY C 97 1 14 HELIX 28 28 THR C 135 ARG C 166 1 32 HELIX 29 29 ASP C 192 ILE C 217 1 26 SHEET 1 A 3 ILE A 32 THR A 33 0 SHEET 2 A 3 THR A 114 CYS A 116 1 O ALA A 115 N ILE A 32 SHEET 3 A 3 ILE A 106 TYR A 107 -1 N ILE A 106 O CYS A 116 SHEET 1 B 4 VAL A 100 THR A 101 0 SHEET 2 B 4 GLY A 120 CYS A 122 -1 O LEU A 121 N THR A 101 SHEET 3 B 4 ALA A 169 TYR A 175 1 O ALA A 173 N GLU A 129 SHEET 4 B 4 LEU A 184 GLU A 190 -1 O ILE A 189 N TRP A 170 SHEET 1 C 3 ILE B 32 THR B 33 0 SHEET 2 C 3 THR B 114 CYS B 116 1 O ALA B 115 N ILE B 32 SHEET 3 C 3 ILE B 106 TYR B 107 -1 N ILE B 106 O CYS B 116 SHEET 1 D 4 VAL B 100 THR B 101 0 SHEET 2 D 4 GLY B 120 CYS B 122 -1 O LEU B 121 N THR B 101 SHEET 3 D 4 ALA B 169 TYR B 175 1 O TYR B 171 N GLY B 127 SHEET 4 D 4 LEU B 184 GLU B 190 -1 O HIS B 185 N ASN B 174 SHEET 1 E 3 ILE C 32 THR C 33 0 SHEET 2 E 3 THR C 114 CYS C 116 1 O ALA C 115 N ILE C 32 SHEET 3 E 3 ILE C 106 TYR C 107 -1 N ILE C 106 O CYS C 116 SHEET 1 F 4 VAL C 100 THR C 101 0 SHEET 2 F 4 GLY C 120 CYS C 122 -1 O LEU C 121 N THR C 101 SHEET 3 F 4 ALA C 169 TYR C 175 1 O ALA C 173 N GLU C 129 SHEET 4 F 4 LEU C 184 GLU C 190 -1 O ILE C 189 N TRP C 170 LINK OD2 ASP B 119 MG MG B 227 1555 1555 2.25 LINK OD1 ASP B 119 MG MG E 15 1555 1555 2.07 LINK OE2 GLU B 129 MG MG B 227 1555 1555 2.18 LINK O LEU B 130 MG MG B 227 1555 1555 2.01 LINK MG MG B 227 O HOH B 550 1555 1555 2.20 LINK MG MG B 227 OP1 DG E 2 1555 1555 2.04 LINK MG MG B 227 O HOH E 543 1555 1555 2.00 LINK O HOH B 277 MG MG E 15 1555 1555 2.18 LINK O HOH B 305 MG MG E 15 1555 1555 1.97 LINK O HOH B 310 MG MG E 15 1555 1555 2.25 LINK O3' DA E 1 MG MG E 15 1555 1555 2.53 LINK OP1 DG E 2 MG MG E 15 1555 1555 2.39 CISPEP 1 GLN A 19 GLY A 20 0 -0.54 SITE 1 AC1 6 VAL A 17 TRP A 24 LEU A 27 ARG A 28 SITE 2 AC1 6 PRO A 104 ILE A 105 SITE 1 AC2 5 ALA A 34 SER A 35 SER A 117 CL A 229 SITE 2 AC2 5 HOH A 299 SITE 1 AC3 5 THR A 33 CYS A 116 SER A 117 CL A 228 SITE 2 AC3 5 HOH A 394 SITE 1 AC4 6 ASP B 119 GLU B 129 LEU B 130 HOH B 550 SITE 2 AC4 6 DG E 2 HOH E 543 SITE 1 AC5 8 ARG C 28 THR C 33 ALA C 34 SER C 35 SITE 2 AC5 8 ALA C 115 CYS C 116 SER C 117 HOH C 527 SITE 1 AC6 6 ASP B 119 HOH B 277 HOH B 305 HOH B 310 SITE 2 AC6 6 DA E 1 DG E 2 CRYST1 78.391 78.391 247.534 90.00 90.00 120.00 P 65 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012757 0.007365 0.000000 0.00000 SCALE2 0.000000 0.014730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004040 0.00000