PDB Short entry for 3SOP HEADER HYDROLASE 30-JUN-11 3SOP TITLE CRYSTAL STRUCTURE OF HUMAN SEPTIN 3 GTPASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL-SPECIFIC SEPTIN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GTPASE DOMAIN (UNP RESIDUES 60-329); COMPND 5 EC: 3.6.5.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEP3, SEPT3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.A.MARQUES,J.N.A.MACEDO,H.M.PEREIRA,N.F.VALADARES,A.P.U.ARAUJO, AUTHOR 2 R.C.GARRATT REVDAT 4 13-SEP-23 3SOP 1 REMARK LINK REVDAT 3 06-FEB-13 3SOP 1 JRNL REVDAT 2 05-DEC-12 3SOP 1 JRNL REVDAT 1 28-NOV-12 3SOP 0 JRNL AUTH J.N.MACEDO,N.F.VALADARES,I.A.MARQUES,F.M.FERREIRA, JRNL AUTH 2 J.C.DAMALIO,H.M.PEREIRA,R.C.GARRATT,A.P.ARAUJO JRNL TITL THE STRUCTURE AND PROPERTIES OF SEPTIN 3: A POSSIBLE MISSING JRNL TITL 2 LINK IN SEPTIN FILAMENT FORMATION. JRNL REF BIOCHEM.J. V. 450 95 2013 JRNL REFN ISSN 0264-6021 JRNL PMID 23163726 JRNL DOI 10.1042/BJ20120851 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 14218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3590 - 4.9325 1.00 2854 150 0.2341 0.2116 REMARK 3 2 4.9325 - 3.9155 1.00 2755 145 0.2137 0.2446 REMARK 3 3 3.9155 - 3.4207 1.00 2712 143 0.2656 0.3036 REMARK 3 4 3.4207 - 3.1080 0.99 2683 140 0.3151 0.3936 REMARK 3 5 3.1080 - 2.8850 0.93 2505 131 0.3322 0.3783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 20.95270 REMARK 3 B22 (A**2) : -29.54420 REMARK 3 B33 (A**2) : 8.59090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3825 REMARK 3 ANGLE : 0.906 5216 REMARK 3 CHIRALITY : 0.109 625 REMARK 3 PLANARITY : 0.004 662 REMARK 3 DIHEDRAL : 16.991 1344 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97627 REMARK 200 MONOCHROMATOR : SI(311) AND SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.885 REMARK 200 RESOLUTION RANGE LOW (A) : 49.352 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.020 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, DM REMARK 200 STARTING MODEL: PDB ENTRY 2QNR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, PH 6.2, 200 MM REMARK 280 MAGNESIUM FORMATE, 18% PEG3350, 5% ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.99850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.99850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.12200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.20700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.12200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.20700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.99850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.12200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.20700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.99850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.12200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.20700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 87 REMARK 465 ARG A 88 REMARK 465 LYS A 89 REMARK 465 ALA A 90 REMARK 465 SER A 91 REMARK 465 SER A 92 REMARK 465 TRP A 93 REMARK 465 ASN A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLU A 97 REMARK 465 LYS A 98 REMARK 465 GLU A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 VAL A 117 REMARK 465 PHE A 129 REMARK 465 GLY A 130 REMARK 465 ASP A 242 REMARK 465 GLU A 243 REMARK 465 ASP A 244 REMARK 465 GLY A 285 REMARK 465 SER B 87 REMARK 465 ARG B 88 REMARK 465 LYS B 89 REMARK 465 ALA B 90 REMARK 465 SER B 91 REMARK 465 SER B 92 REMARK 465 TRP B 93 REMARK 465 ASN B 94 REMARK 465 ARG B 95 REMARK 465 GLU B 96 REMARK 465 GLU B 97 REMARK 465 GLU B 114 REMARK 465 GLY B 130 REMARK 465 GLN B 271 REMARK 465 VAL B 272 REMARK 465 ASN B 273 REMARK 465 GLY B 274 REMARK 465 LYS B 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 ILE A 99 CB CG1 CG2 CD1 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 VAL A 111 CG1 CG2 REMARK 470 ILE A 112 CG1 CG2 CD1 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 LEU A 214 CG CD1 CD2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 GLN A 222 CG CD OE1 NE2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 ASP A 247 CG OD1 OD2 REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 THR A 249 OG1 CG2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 ASP A 252 CG OD1 OD2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLN A 256 CG CD OE1 NE2 REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 ASN A 273 CG OD1 ND2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 TRP A 284 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 284 CZ3 CH2 REMARK 470 GLN A 310 CG CD OE1 NE2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 LEU A 329 CB CG CD1 CD2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 ILE B 99 CG1 CG2 CD1 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 VAL B 103 CB CG1 CG2 REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 HIS B 110 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 112 CG1 CG2 CD1 REMARK 470 VAL B 117 CG1 CG2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 PHE B 129 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 131 CG OD1 OD2 REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 GLU B 140 CG CD OE1 OE2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 ASN B 159 OD1 ND2 REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LEU B 214 CG CD1 CD2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 GLU B 219 CG CD OE1 OE2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 GLU B 229 CG CD OE1 OE2 REMARK 470 GLU B 234 CG CD OE1 OE2 REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 ASP B 244 CG OD1 OD2 REMARK 470 LEU B 245 CG CD1 CD2 REMARK 470 GLU B 246 CG CD OE1 OE2 REMARK 470 GLU B 250 CG CD OE1 OE2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 GLN B 256 CG CD OE1 NE2 REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 LYS B 268 CG CD CE NZ REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 TYR B 270 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 276 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 TRP B 284 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 284 CZ3 CH2 REMARK 470 ASN B 293 CG OD1 ND2 REMARK 470 GLN B 310 CG CD OE1 NE2 REMARK 470 GLU B 322 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 76 O2A GDP A 402 1.79 REMARK 500 O PRO B 237 NH1 ARG B 255 1.89 REMARK 500 OG SER B 266 O GLY B 279 2.01 REMARK 500 N GLY A 71 O1B GDP A 402 2.09 REMARK 500 NH1 ARG A 225 O GLU A 257 2.15 REMARK 500 OG1 THR B 76 O2A GDP B 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 164 OD2 ASP B 247 5445 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 100 -169.31 -67.53 REMARK 500 ASN A 135 57.67 -118.28 REMARK 500 LYS A 281 48.92 -92.62 REMARK 500 ARG A 306 -73.76 -122.80 REMARK 500 ILE A 319 -75.13 -107.55 REMARK 500 GLN B 85 41.84 -82.08 REMARK 500 VAL B 117 -175.53 -67.09 REMARK 500 ASN B 135 73.71 -108.74 REMARK 500 ASN B 137 29.24 44.29 REMARK 500 VAL B 199 -9.21 -140.56 REMARK 500 ARG B 306 -71.31 -109.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 75 OG REMARK 620 2 THR A 102 OG1 85.0 REMARK 620 3 GDP A 402 O3B 86.0 167.6 REMARK 620 4 HOH A 502 O 169.8 103.6 86.3 REMARK 620 5 HOH A 503 O 76.3 80.6 105.5 99.3 REMARK 620 6 HOH A 504 O 88.3 95.0 76.3 96.3 164.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 75 OG REMARK 620 2 THR B 102 OG1 97.5 REMARK 620 3 GDP B 402 O1B 79.3 163.7 REMARK 620 4 HOH B 501 O 162.1 100.3 84.2 REMARK 620 5 HOH B 506 O 88.8 72.0 91.8 98.7 REMARK 620 6 HOH B 507 O 87.7 101.2 94.7 86.8 171.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 402 DBREF 3SOP A 60 329 UNP Q9UH03 SEPT3_HUMAN 60 329 DBREF 3SOP B 60 329 UNP Q9UH03 SEPT3_HUMAN 60 329 SEQRES 1 A 270 PHE ASP PHE ASN ILE MET VAL VAL GLY GLN SER GLY LEU SEQRES 2 A 270 GLY LYS SER THR LEU VAL ASN THR LEU PHE LYS SER GLN SEQRES 3 A 270 VAL SER ARG LYS ALA SER SER TRP ASN ARG GLU GLU LYS SEQRES 4 A 270 ILE PRO LYS THR VAL GLU ILE LYS ALA ILE GLY HIS VAL SEQRES 5 A 270 ILE GLU GLU GLY GLY VAL LYS MET LYS LEU THR VAL ILE SEQRES 6 A 270 ASP THR PRO GLY PHE GLY ASP GLN ILE ASN ASN GLU ASN SEQRES 7 A 270 CYS TRP GLU PRO ILE GLU LYS TYR ILE ASN GLU GLN TYR SEQRES 8 A 270 GLU LYS PHE LEU LYS GLU GLU VAL ASN ILE ALA ARG LYS SEQRES 9 A 270 LYS ARG ILE PRO ASP THR ARG VAL HIS CYS CYS LEU TYR SEQRES 10 A 270 PHE ILE SER PRO THR GLY HIS SER LEU ARG PRO LEU ASP SEQRES 11 A 270 LEU GLU PHE MET LYS HIS LEU SER LYS VAL VAL ASN ILE SEQRES 12 A 270 ILE PRO VAL ILE ALA LYS ALA ASP THR MET THR LEU GLU SEQRES 13 A 270 GLU LYS SER GLU PHE LYS GLN ARG VAL ARG LYS GLU LEU SEQRES 14 A 270 GLU VAL ASN GLY ILE GLU PHE TYR PRO GLN LYS GLU PHE SEQRES 15 A 270 ASP GLU ASP LEU GLU ASP LYS THR GLU ASN ASP LYS ILE SEQRES 16 A 270 ARG GLN GLU SER MET PRO PHE ALA VAL VAL GLY SER ASP SEQRES 17 A 270 LYS GLU TYR GLN VAL ASN GLY LYS ARG VAL LEU GLY ARG SEQRES 18 A 270 LYS THR PRO TRP GLY ILE ILE GLU VAL GLU ASN LEU ASN SEQRES 19 A 270 HIS CYS GLU PHE ALA LEU LEU ARG ASP PHE VAL ILE ARG SEQRES 20 A 270 THR HIS LEU GLN ASP LEU LYS GLU VAL THR HIS ASN ILE SEQRES 21 A 270 HIS TYR GLU THR TYR ARG ALA LYS ARG LEU SEQRES 1 B 270 PHE ASP PHE ASN ILE MET VAL VAL GLY GLN SER GLY LEU SEQRES 2 B 270 GLY LYS SER THR LEU VAL ASN THR LEU PHE LYS SER GLN SEQRES 3 B 270 VAL SER ARG LYS ALA SER SER TRP ASN ARG GLU GLU LYS SEQRES 4 B 270 ILE PRO LYS THR VAL GLU ILE LYS ALA ILE GLY HIS VAL SEQRES 5 B 270 ILE GLU GLU GLY GLY VAL LYS MET LYS LEU THR VAL ILE SEQRES 6 B 270 ASP THR PRO GLY PHE GLY ASP GLN ILE ASN ASN GLU ASN SEQRES 7 B 270 CYS TRP GLU PRO ILE GLU LYS TYR ILE ASN GLU GLN TYR SEQRES 8 B 270 GLU LYS PHE LEU LYS GLU GLU VAL ASN ILE ALA ARG LYS SEQRES 9 B 270 LYS ARG ILE PRO ASP THR ARG VAL HIS CYS CYS LEU TYR SEQRES 10 B 270 PHE ILE SER PRO THR GLY HIS SER LEU ARG PRO LEU ASP SEQRES 11 B 270 LEU GLU PHE MET LYS HIS LEU SER LYS VAL VAL ASN ILE SEQRES 12 B 270 ILE PRO VAL ILE ALA LYS ALA ASP THR MET THR LEU GLU SEQRES 13 B 270 GLU LYS SER GLU PHE LYS GLN ARG VAL ARG LYS GLU LEU SEQRES 14 B 270 GLU VAL ASN GLY ILE GLU PHE TYR PRO GLN LYS GLU PHE SEQRES 15 B 270 ASP GLU ASP LEU GLU ASP LYS THR GLU ASN ASP LYS ILE SEQRES 16 B 270 ARG GLN GLU SER MET PRO PHE ALA VAL VAL GLY SER ASP SEQRES 17 B 270 LYS GLU TYR GLN VAL ASN GLY LYS ARG VAL LEU GLY ARG SEQRES 18 B 270 LYS THR PRO TRP GLY ILE ILE GLU VAL GLU ASN LEU ASN SEQRES 19 B 270 HIS CYS GLU PHE ALA LEU LEU ARG ASP PHE VAL ILE ARG SEQRES 20 B 270 THR HIS LEU GLN ASP LEU LYS GLU VAL THR HIS ASN ILE SEQRES 21 B 270 HIS TYR GLU THR TYR ARG ALA LYS ARG LEU HET MG A 401 1 HET GDP A 402 28 HET MG B 401 1 HET GDP B 402 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 HOH *11(H2 O) HELIX 1 1 GLY A 73 VAL A 86 1 14 HELIX 2 2 TRP A 139 VAL A 158 1 20 HELIX 3 3 ARG A 186 LYS A 198 1 13 HELIX 4 4 LYS A 208 MET A 212 5 5 HELIX 5 5 THR A 213 ASN A 231 1 19 HELIX 6 6 GLU A 246 GLU A 257 1 12 HELIX 7 7 GLU A 296 ARG A 306 1 11 HELIX 8 8 HIS A 308 ILE A 319 1 12 HELIX 9 9 ILE A 319 LEU A 329 1 11 HELIX 10 10 GLY B 73 GLN B 85 1 13 HELIX 11 11 TRP B 139 GLU B 157 1 19 HELIX 12 12 ARG B 186 LYS B 198 1 13 HELIX 13 13 LYS B 208 MET B 212 5 5 HELIX 14 14 THR B 213 GLY B 232 1 20 HELIX 15 15 ASP B 244 LYS B 253 1 10 HELIX 16 16 GLU B 296 ARG B 306 1 11 HELIX 17 17 HIS B 308 ILE B 319 1 12 HELIX 18 18 ILE B 319 LEU B 329 1 11 SHEET 1 A 6 ALA A 107 HIS A 110 0 SHEET 2 A 6 LYS A 120 ILE A 124 -1 O VAL A 123 N ILE A 108 SHEET 3 A 6 ASP A 61 GLY A 68 1 N ILE A 64 O ILE A 124 SHEET 4 A 6 CYS A 173 ILE A 178 1 O LEU A 175 N VAL A 67 SHEET 5 A 6 ASN A 201 ILE A 206 1 O ASN A 201 N CYS A 174 SHEET 6 A 6 PHE A 261 ALA A 262 1 O PHE A 261 N ILE A 206 SHEET 1 B 3 GLU A 269 VAL A 272 0 SHEET 2 B 3 LYS A 275 ARG A 280 -1 O VAL A 277 N TYR A 270 SHEET 3 B 3 ILE A 287 GLU A 288 -1 O ILE A 287 N ARG A 280 SHEET 1 C 6 LYS B 106 ILE B 112 0 SHEET 2 C 6 MET B 119 ASP B 125 -1 O VAL B 123 N ILE B 108 SHEET 3 C 6 ASP B 61 GLY B 68 1 N ILE B 64 O ILE B 124 SHEET 4 C 6 CYS B 173 ILE B 178 1 O LEU B 175 N VAL B 67 SHEET 5 C 6 ILE B 202 ILE B 206 1 O ILE B 203 N CYS B 174 SHEET 6 C 6 PHE B 261 ALA B 262 1 O PHE B 261 N ILE B 206 SHEET 1 D 2 GLY B 279 ARG B 280 0 SHEET 2 D 2 ILE B 287 GLU B 288 -1 O ILE B 287 N ARG B 280 LINK OG SER A 75 MG MG A 401 1555 1555 2.11 LINK OG1 THR A 102 MG MG A 401 1555 1555 2.14 LINK MG MG A 401 O3B GDP A 402 1555 1555 2.22 LINK MG MG A 401 O HOH A 502 1555 1555 2.17 LINK MG MG A 401 O HOH A 503 1555 1555 2.21 LINK MG MG A 401 O HOH A 504 1555 1555 2.14 LINK OG SER B 75 MG MG B 401 1555 1555 2.30 LINK OG1 THR B 102 MG MG B 401 1555 1555 2.36 LINK MG MG B 401 O1B GDP B 402 1555 1555 2.25 LINK MG MG B 401 O HOH B 501 1555 1555 2.63 LINK MG MG B 401 O HOH B 506 1555 1555 2.29 LINK MG MG B 401 O HOH B 507 1555 1555 2.46 CISPEP 1 TYR A 236 PRO A 237 0 0.56 CISPEP 2 MET A 259 PRO A 260 0 4.81 CISPEP 3 TYR B 236 PRO B 237 0 -1.02 CISPEP 4 MET B 259 PRO B 260 0 2.23 SITE 1 AC1 6 SER A 75 THR A 102 GDP A 402 HOH A 502 SITE 2 AC1 6 HOH A 503 HOH A 504 SITE 1 AC2 17 SER A 70 GLY A 71 LEU A 72 GLY A 73 SITE 2 AC2 17 LYS A 74 SER A 75 THR A 76 LYS A 208 SITE 3 AC2 17 ASP A 210 VAL A 264 GLY A 265 ARG A 280 SITE 4 AC2 17 MG A 401 HOH A 502 HOH A 504 HIS B 183 SITE 5 AC2 17 THR B 211 SITE 1 AC3 6 SER B 75 THR B 102 GDP B 402 HOH B 501 SITE 2 AC3 6 HOH B 506 HOH B 507 SITE 1 AC4 15 HIS A 183 THR A 211 SER B 70 GLY B 71 SITE 2 AC4 15 LEU B 72 GLY B 73 LYS B 74 SER B 75 SITE 3 AC4 15 THR B 76 LYS B 208 ASP B 210 VAL B 264 SITE 4 AC4 15 GLY B 265 ARG B 280 MG B 401 CRYST1 52.244 150.414 157.997 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019141 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006329 0.00000