PDB Short entry for 3SVL HEADER OXIDOREDUCTASE 12-JUL-11 3SVL TITLE STRUCTURAL BASIS OF THE IMPROVEMENT OF CHRR - A MULTI-PURPOSE ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YIEF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YIEF, B3713, JW3691; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB3 KEYWDS E. COLI CHRR ENZYME, CHROMATE BIOREMEDIATION, TETRAMER ROLE, IMPROVED KEYWDS 2 MUTANT ENZYMES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.POULAIN,S.ESWARAMOORTHY,R.HIENERWADEL,N.BREMOND,M.D.SYLVESTER, AUTHOR 2 Y.B.ZHANG,D.VAN DER LELIE,C.BERTHOMIEU,A.C.MATIN REVDAT 2 13-SEP-23 3SVL 1 REMARK SEQADV LINK REVDAT 1 30-MAY-12 3SVL 0 JRNL AUTH S.ESWARAMOORTHY,S.POULAIN,R.HIENERWADEL,N.BREMOND, JRNL AUTH 2 M.D.SYLVESTER,Y.B.ZHANG,C.BERTHOMIEU,D.VAN DER LELIE,A.MATIN JRNL TITL CRYSTAL STRUCTURE OF CHRR-A QUINONE REDUCTASE WITH THE JRNL TITL 2 CAPACITY TO REDUCE CHROMATE. JRNL REF PLOS ONE V. 7 36017 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22558308 JRNL DOI 10.1371/JOURNAL.PONE.0036017 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 20771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 807 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4220 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 82 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.047 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2743 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.94000 REMARK 3 B12 (A**2) : 1.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0166 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22919 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 24.50 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1RTT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 0.150M NACL, 0.1M CA REMARK 280 ACETATE, 0.1M BISTRIS, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.12550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.12550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.12550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.12550 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.12550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.12550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 160.88250 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 92.88555 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 288 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 268 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 185 REMARK 465 VAL A 186 REMARK 465 LYS A 187 REMARK 465 ILE A 188 REMARK 465 LEU A 189 REMARK 465 GLU A 190 REMARK 465 GLY A 191 REMARK 465 SER A 192 REMARK 465 SER A 193 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 VAL B 186 REMARK 465 LYS B 187 REMARK 465 ILE B 188 REMARK 465 LEU B 189 REMARK 465 GLU B 190 REMARK 465 GLY B 191 REMARK 465 SER B 192 REMARK 465 SER B 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 105 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 86 -162.25 -160.19 REMARK 500 ASP A 103 60.95 -100.85 REMARK 500 GLN A 104 101.85 -31.97 REMARK 500 ASN A 143 -73.18 -87.89 REMARK 500 VAL A 151 59.04 39.87 REMARK 500 ASP A 165 107.17 -52.66 REMARK 500 SER B 18 133.73 -39.84 REMARK 500 GLN B 104 115.01 -39.12 REMARK 500 ASN B 143 -121.25 -73.57 REMARK 500 GLN B 184 71.18 -65.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 128 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 50 OD2 REMARK 620 2 ASP A 52 OD2 114.2 REMARK 620 3 HOH A 284 O 112.9 80.6 REMARK 620 4 HOH A 285 O 70.3 168.6 107.7 REMARK 620 5 LEU B 14 O 85.3 99.7 160.1 69.8 REMARK 620 6 HOH B 251 O 151.1 90.3 84.9 82.8 75.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 200 DBREF 3SVL A 1 188 UNP P0AGE6 YIEF_ECOLI 1 188 DBREF 3SVL B 1 188 UNP P0AGE6 YIEF_ECOLI 1 188 SEQADV 3SVL ALA A 2 UNP P0AGE6 SER 2 CLONING ARTIFACT SEQADV 3SVL LEU A 189 UNP P0AGE6 EXPRESSION TAG SEQADV 3SVL GLU A 190 UNP P0AGE6 EXPRESSION TAG SEQADV 3SVL GLY A 191 UNP P0AGE6 EXPRESSION TAG SEQADV 3SVL SER A 192 UNP P0AGE6 EXPRESSION TAG SEQADV 3SVL SER A 193 UNP P0AGE6 EXPRESSION TAG SEQADV 3SVL ALA B 2 UNP P0AGE6 SER 2 CLONING ARTIFACT SEQADV 3SVL LEU B 189 UNP P0AGE6 EXPRESSION TAG SEQADV 3SVL GLU B 190 UNP P0AGE6 EXPRESSION TAG SEQADV 3SVL GLY B 191 UNP P0AGE6 EXPRESSION TAG SEQADV 3SVL SER B 192 UNP P0AGE6 EXPRESSION TAG SEQADV 3SVL SER B 193 UNP P0AGE6 EXPRESSION TAG SEQRES 1 A 193 MET ALA GLU LYS LEU GLN VAL VAL THR LEU LEU GLY SER SEQRES 2 A 193 LEU ARG LYS GLY SER PHE ASN GLY MET VAL ALA ARG THR SEQRES 3 A 193 LEU PRO LYS ILE ALA PRO ALA SER MET GLU VAL ASN ALA SEQRES 4 A 193 LEU PRO SER ILE ALA ASP ILE PRO LEU TYR ASP ALA ASP SEQRES 5 A 193 VAL GLN GLN GLU GLU GLY PHE PRO ALA THR VAL GLU ALA SEQRES 6 A 193 LEU ALA GLU GLN ILE ARG GLN ALA ASP GLY VAL VAL ILE SEQRES 7 A 193 VAL THR PRO GLU TYR ASN TYR SER VAL PRO GLY GLY LEU SEQRES 8 A 193 LYS ASN ALA ILE ASP TRP LEU SER ARG LEU PRO ASP GLN SEQRES 9 A 193 PRO LEU ALA GLY LYS PRO VAL LEU ILE GLN THR SER SER SEQRES 10 A 193 MET GLY VAL ILE GLY GLY ALA ARG CYS GLN TYR HIS LEU SEQRES 11 A 193 ARG GLN ILE LEU VAL PHE LEU ASP ALA MET VAL MET ASN SEQRES 12 A 193 LYS PRO GLU PHE MET GLY GLY VAL ILE GLN ASN LYS VAL SEQRES 13 A 193 ASP PRO GLN THR GLY GLU VAL ILE ASP GLN GLY THR LEU SEQRES 14 A 193 ASP HIS LEU THR GLY GLN LEU THR ALA PHE GLY GLU PHE SEQRES 15 A 193 ILE GLN ARG VAL LYS ILE LEU GLU GLY SER SER SEQRES 1 B 193 MET ALA GLU LYS LEU GLN VAL VAL THR LEU LEU GLY SER SEQRES 2 B 193 LEU ARG LYS GLY SER PHE ASN GLY MET VAL ALA ARG THR SEQRES 3 B 193 LEU PRO LYS ILE ALA PRO ALA SER MET GLU VAL ASN ALA SEQRES 4 B 193 LEU PRO SER ILE ALA ASP ILE PRO LEU TYR ASP ALA ASP SEQRES 5 B 193 VAL GLN GLN GLU GLU GLY PHE PRO ALA THR VAL GLU ALA SEQRES 6 B 193 LEU ALA GLU GLN ILE ARG GLN ALA ASP GLY VAL VAL ILE SEQRES 7 B 193 VAL THR PRO GLU TYR ASN TYR SER VAL PRO GLY GLY LEU SEQRES 8 B 193 LYS ASN ALA ILE ASP TRP LEU SER ARG LEU PRO ASP GLN SEQRES 9 B 193 PRO LEU ALA GLY LYS PRO VAL LEU ILE GLN THR SER SER SEQRES 10 B 193 MET GLY VAL ILE GLY GLY ALA ARG CYS GLN TYR HIS LEU SEQRES 11 B 193 ARG GLN ILE LEU VAL PHE LEU ASP ALA MET VAL MET ASN SEQRES 12 B 193 LYS PRO GLU PHE MET GLY GLY VAL ILE GLN ASN LYS VAL SEQRES 13 B 193 ASP PRO GLN THR GLY GLU VAL ILE ASP GLN GLY THR LEU SEQRES 14 B 193 ASP HIS LEU THR GLY GLN LEU THR ALA PHE GLY GLU PHE SEQRES 15 B 193 ILE GLN ARG VAL LYS ILE LEU GLU GLY SER SER HET FMN A 200 31 HET CA A 201 1 HET FMN B 200 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM CA CALCIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 CA CA 2+ FORMUL 6 HOH *87(H2 O) HELIX 1 1 SER A 18 LEU A 27 1 10 HELIX 2 2 PRO A 28 ILE A 30 5 3 HELIX 3 3 ASP A 50 GLU A 57 1 8 HELIX 4 4 PRO A 60 ALA A 73 1 14 HELIX 5 5 PRO A 88 ARG A 100 1 13 HELIX 6 6 GLY A 123 LEU A 137 1 15 HELIX 7 7 VAL A 151 ASN A 154 5 4 HELIX 8 8 ASP A 165 ILE A 183 1 19 HELIX 9 9 SER B 18 ALA B 31 1 14 HELIX 10 10 ASP B 50 GLU B 57 1 8 HELIX 11 11 PRO B 60 ALA B 73 1 14 HELIX 12 12 PRO B 88 SER B 99 1 12 HELIX 13 13 GLY B 123 LEU B 137 1 15 HELIX 14 14 VAL B 151 ASN B 154 5 4 HELIX 15 15 ASP B 165 GLN B 184 1 20 SHEET 1 A 5 MET A 35 ALA A 39 0 SHEET 2 A 5 LEU A 5 LEU A 11 1 N LEU A 5 O GLU A 36 SHEET 3 A 5 GLY A 75 THR A 80 1 O VAL A 77 N VAL A 8 SHEET 4 A 5 PRO A 110 SER A 116 1 O LEU A 112 N ILE A 78 SHEET 5 A 5 MET A 140 VAL A 141 1 O MET A 140 N VAL A 111 SHEET 1 B 5 MET A 35 ALA A 39 0 SHEET 2 B 5 LEU A 5 LEU A 11 1 N LEU A 5 O GLU A 36 SHEET 3 B 5 GLY A 75 THR A 80 1 O VAL A 77 N VAL A 8 SHEET 4 B 5 PRO A 110 SER A 116 1 O LEU A 112 N ILE A 78 SHEET 5 B 5 PHE A 147 GLY A 149 1 O GLY A 149 N THR A 115 SHEET 1 C 2 VAL A 156 ASP A 157 0 SHEET 2 C 2 GLU A 162 VAL A 163 -1 O GLU A 162 N ASP A 157 SHEET 1 D 5 MET B 35 ALA B 39 0 SHEET 2 D 5 LEU B 5 LEU B 11 1 N VAL B 7 O GLU B 36 SHEET 3 D 5 GLY B 75 THR B 80 1 O VAL B 77 N VAL B 8 SHEET 4 D 5 PRO B 110 SER B 116 1 O LEU B 112 N VAL B 76 SHEET 5 D 5 MET B 140 VAL B 141 1 O MET B 140 N VAL B 111 SHEET 1 E 5 MET B 35 ALA B 39 0 SHEET 2 E 5 LEU B 5 LEU B 11 1 N VAL B 7 O GLU B 36 SHEET 3 E 5 GLY B 75 THR B 80 1 O VAL B 77 N VAL B 8 SHEET 4 E 5 PRO B 110 SER B 116 1 O LEU B 112 N VAL B 76 SHEET 5 E 5 PHE B 147 GLY B 149 1 O GLY B 149 N THR B 115 SHEET 1 F 2 VAL B 156 ASP B 157 0 SHEET 2 F 2 GLU B 162 VAL B 163 -1 O GLU B 162 N ASP B 157 LINK OD2 ASP A 50 CA CA A 201 1555 1555 2.25 LINK OD2 ASP A 52 CA CA A 201 1555 1555 2.67 LINK CA CA A 201 O HOH A 284 1555 1555 2.43 LINK CA CA A 201 O HOH A 285 1555 1555 2.82 LINK CA CA A 201 O LEU B 14 1555 1555 2.50 LINK CA CA A 201 O HOH B 251 1555 1555 2.55 CISPEP 1 LYS A 144 PRO A 145 0 -0.20 CISPEP 2 LYS B 144 PRO B 145 0 -0.29 SITE 1 AC1 18 SER A 13 ARG A 15 SER A 18 PHE A 19 SITE 2 AC1 18 ASN A 20 PRO A 81 GLU A 82 TYR A 83 SITE 3 AC1 18 ASN A 84 TYR A 85 SER A 117 MET A 118 SITE 4 AC1 18 HOH A 231 HOH A 234 HOH A 244 HOH A 245 SITE 5 AC1 18 TYR B 49 ARG B 100 SITE 1 AC2 6 ASP A 50 ASP A 52 HOH A 284 HOH A 285 SITE 2 AC2 6 LEU B 14 HOH B 251 SITE 1 AC3 20 TYR A 49 ASP A 96 ARG A 100 PHE A 136 SITE 2 AC3 20 SER B 13 ARG B 15 SER B 18 PHE B 19 SITE 3 AC3 20 ASN B 20 PRO B 81 GLU B 82 TYR B 83 SITE 4 AC3 20 ASN B 84 TYR B 85 SER B 117 MET B 118 SITE 5 AC3 20 HOH B 220 HOH B 233 HOH B 255 HOH B 265 CRYST1 107.255 107.255 128.251 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009324 0.005383 0.000000 0.00000 SCALE2 0.000000 0.010766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007797 0.00000