PDB Short entry for 3SZQ HEADER HYDROLASE/DNA 19-JUL-11 3SZQ TITLE STRUCTURE OF AN S. POMBE APTX/DNA/AMP/ZN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: APRATAXIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: APTX HIT-ZNF CATALYTIC DOMAIN (UNP RESIDUES 31-232); COMPND 5 SYNONYM: HIT FAMILY PROTEIN 3; COMPND 6 EC: 3.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*CP*CP*CP*TP*G)-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*TP*AP*TP*CP*GP*GP*AP*AP*TP*CP*AP*GP*GP*G)-3'; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: ATCC 38366 / 972; SOURCE 6 GENE: HNT3, SPCC18.09C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS HISTIDINE TRIAD (HIT), C2HE ZINC FINGER, DNA REPAIR, HYDROLASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.TUMBALE,J.KRAHN,R.S.WILLIAMS REVDAT 2 23-NOV-11 3SZQ 1 JRNL REVDAT 1 12-OCT-11 3SZQ 0 JRNL AUTH P.TUMBALE,C.D.APPEL,R.KRAEHENBUEHL,P.D.ROBERTSON, JRNL AUTH 2 J.S.WILLIAMS,J.KRAHN,I.AHEL,R.S.WILLIAMS JRNL TITL STRUCTURE OF AN APRATAXIN-DNA COMPLEX WITH INSIGHTS INTO JRNL TITL 2 AOA1 NEURODEGENERATIVE DISEASE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1189 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21984210 JRNL DOI 10.1038/NSMB.2146 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.280 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8332 - 4.8838 1.00 2780 135 0.1773 0.2073 REMARK 3 2 4.8838 - 3.8812 1.00 2713 160 0.1308 0.1580 REMARK 3 3 3.8812 - 3.3920 1.00 2732 154 0.1551 0.1869 REMARK 3 4 3.3920 - 3.0825 1.00 2757 119 0.1569 0.2365 REMARK 3 5 3.0825 - 2.8619 1.00 2755 140 0.1727 0.2103 REMARK 3 6 2.8619 - 2.6934 1.00 2768 129 0.1774 0.3004 REMARK 3 7 2.6934 - 2.5586 1.00 2726 135 0.1857 0.2361 REMARK 3 8 2.5586 - 2.4474 1.00 2731 142 0.1933 0.2787 REMARK 3 9 2.4474 - 2.3532 1.00 2780 136 0.2076 0.2698 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.41 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2046 REMARK 3 ANGLE : 1.062 2829 REMARK 3 CHIRALITY : 0.065 313 REMARK 3 PLANARITY : 0.004 308 REMARK 3 DIHEDRAL : 17.047 766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB066854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2830 REMARK 200 MONOCHROMATOR : SI(111) ROSENBAUM-ROCK DOUBLE- REMARK 200 CRYSTAL MONOCHROMATOR: LN2- REMARK 200 COOLED, SAGITALLY FOCUSING 2ND REMARK 200 CRYSTAL, ROSENBAUM-ROCK VERTICAL REMARK 200 FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 49.663 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM/POTASSIUM TARTRATE, 20% REMARK 280 W/V PEG3350, PH 10.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 78.52500 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 78.52500 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 78.52500 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 78.52500 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 78.52500 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 78.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 157.05000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 261 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 8 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 283 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 MET A 30 REMARK 465 LYS A 31 REMARK 465 MET A 232 REMARK 465 DT C 1 REMARK 465 DA C 2 REMARK 465 DT C 3 REMARK 465 DC C 4 REMARK 465 DG C 5 REMARK 465 DG C 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 LYS A 49 CD CE NZ REMARK 470 LYS A 213 CD CE NZ REMARK 470 SER A 231 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 10 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC C 10 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 120 -83.99 -109.52 REMARK 500 SER A 157 137.65 -171.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 376 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH A 386 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 221 OE2 REMARK 620 2 HIS A 217 NE2 105.7 REMARK 620 3 CYS A 200 SG 114.0 112.5 REMARK 620 4 CYS A 203 SG 103.9 105.4 114.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 DBREF 3SZQ A 31 232 UNP O74859 APTX_SCHPO 31 232 DBREF 3SZQ B 1 5 PDB 3SZQ 3SZQ 1 5 DBREF 3SZQ C 1 14 PDB 3SZQ 3SZQ 1 14 SEQADV 3SZQ GLY A 27 UNP O74859 EXPRESSION TAG SEQADV 3SZQ SER A 28 UNP O74859 EXPRESSION TAG SEQADV 3SZQ HIS A 29 UNP O74859 EXPRESSION TAG SEQADV 3SZQ MET A 30 UNP O74859 EXPRESSION TAG SEQRES 1 A 206 GLY SER HIS MET LYS GLN SER PHE ARG ASP ASN LEU LYS SEQRES 2 A 206 VAL TYR ILE GLU SER PRO GLU SER TYR LYS ASN VAL ILE SEQRES 3 A 206 TYR TYR ASP ASP ASP VAL VAL LEU VAL ARG ASP MET PHE SEQRES 4 A 206 PRO LYS SER LYS MET HIS LEU LEU LEU MET THR ARG ASP SEQRES 5 A 206 PRO HIS LEU THR HIS VAL HIS PRO LEU GLU ILE MET MET SEQRES 6 A 206 LYS HIS ARG SER LEU VAL GLU LYS LEU VAL SER TYR VAL SEQRES 7 A 206 GLN GLY ASP LEU SER GLY LEU ILE PHE ASP GLU ALA ARG SEQRES 8 A 206 ASN CYS LEU SER GLN GLN LEU THR ASN GLU ALA LEU CYS SEQRES 9 A 206 ASN TYR ILE LYS VAL GLY PHE HIS ALA GLY PRO SER MET SEQRES 10 A 206 ASN ASN LEU HIS LEU HIS ILE MET THR LEU ASP HIS VAL SEQRES 11 A 206 SER PRO SER LEU LYS ASN SER ALA HIS TYR ILE SER PHE SEQRES 12 A 206 THR SER PRO PHE PHE VAL LYS ILE ASP THR PRO THR SER SEQRES 13 A 206 ASN LEU PRO THR ARG GLY THR LEU THR SER LEU PHE GLN SEQRES 14 A 206 GLU ASP LEU LYS CYS TRP ARG CYS GLY GLU THR PHE GLY SEQRES 15 A 206 ARG HIS PHE THR LYS LEU LYS ALA HIS LEU GLN GLU GLU SEQRES 16 A 206 TYR ASP ASP TRP LEU ASP LYS SER VAL SER MET SEQRES 1 B 5 DC DC DC DT DG SEQRES 1 C 14 DT DA DT DC DG DG DA DA DT DC DA DG DG SEQRES 2 C 14 DG HET AMP A 1 23 HET BME A 2 4 HET BME A 3 4 HET ZN A 4 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM BME BETA-MERCAPTOETHANOL HETNAM ZN ZINC ION FORMUL 4 AMP C10 H14 N5 O7 P FORMUL 5 BME 2(C2 H6 O S) FORMUL 7 ZN ZN 2+ FORMUL 8 HOH *211(H2 O) HELIX 1 1 SER A 33 ASN A 37 5 5 HELIX 2 2 LEU A 38 SER A 44 1 7 HELIX 3 3 PRO A 45 TYR A 48 5 4 HELIX 4 4 HIS A 80 VAL A 84 5 5 HELIX 5 5 HIS A 85 HIS A 93 1 9 HELIX 6 6 HIS A 93 GLY A 106 1 14 HELIX 7 7 LEU A 108 LEU A 120 1 13 HELIX 8 8 THR A 125 ASN A 131 1 7 HELIX 9 9 ASN A 162 SER A 171 1 10 HELIX 10 10 PRO A 180 LEU A 184 5 5 HELIX 11 11 THR A 186 THR A 191 1 6 HELIX 12 12 SER A 192 GLU A 196 5 5 HELIX 13 13 HIS A 210 VAL A 230 1 21 SHEET 1 A 6 VAL A 51 TYR A 54 0 SHEET 2 A 6 VAL A 58 ARG A 62 -1 O LEU A 60 N TYR A 53 SHEET 3 A 6 HIS A 71 THR A 76 -1 O LEU A 73 N VAL A 61 SHEET 4 A 6 HIS A 147 THR A 152 -1 O ILE A 150 N LEU A 72 SHEET 5 A 6 ILE A 133 HIS A 138 -1 N LYS A 134 O MET A 151 SHEET 6 A 6 PHE A 174 LYS A 176 -1 O VAL A 175 N PHE A 137 LINK OE2 GLU A 221 ZN ZN A 4 1555 1555 2.03 LINK NE2 HIS A 217 ZN ZN A 4 1555 1555 2.16 LINK SG CYS A 200 ZN ZN A 4 1555 1555 2.26 LINK SG CYS A 203 ZN ZN A 4 1555 1555 2.56 SITE 1 AC1 17 HOH A 19 LEU A 38 TYR A 41 ASP A 63 SITE 2 AC1 17 MET A 64 PHE A 65 LYS A 67 HIS A 71 SITE 3 AC1 17 HIS A 138 PRO A 141 SER A 142 MET A 143 SITE 4 AC1 17 HIS A 147 HIS A 149 HOH A 246 HOH A 316 SITE 5 AC1 17 DC B 1 SITE 1 AC2 4 LYS A 134 VAL A 135 LYS A 176 ASP A 178 SITE 1 AC3 3 SER A 142 HOH A 316 DC B 1 SITE 1 AC4 4 CYS A 200 CYS A 203 HIS A 217 GLU A 221 CRYST1 157.050 157.050 157.050 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006367 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006367 0.00000