PDB Short entry for 3T2B HEADER LYASE, HYDROLASE 22-JUL-11 3T2B TITLE FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS TITLE 2 NEUTROPHILUS, LIGAND FREE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.13, 3.1.3.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPROTEUS NEUTROPHILUS; SOURCE 3 ORGANISM_TAXID: 444157; SOURCE 4 STRAIN: DSM 2338 / JCM 9278 / V24STA; SOURCE 5 GENE: TNEU_0133; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS (BETA/ALPHA)8 TIM BARREL, FBP, F6P, DHAP, GAP, PHOSPHORYLATION, KEYWDS 2 LYASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DU,R.SAY,W.LUE,G.FUCHS,O.EINSLE REVDAT 3 13-SEP-23 3T2B 1 REMARK SEQADV LINK REVDAT 2 09-NOV-11 3T2B 1 JRNL REVDAT 1 26-OCT-11 3T2B 0 JRNL AUTH J.DU,R.F.SAY,W.LU,G.FUCHS,O.EINSLE JRNL TITL ACTIVE-SITE REMODELLING IN THE BIFUNCTIONAL JRNL TITL 2 FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE. JRNL REF NATURE V. 478 534 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21983965 JRNL DOI 10.1038/NATURE10458 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 70543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3740 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5162 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 254 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.085 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3124 ; 0.033 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4245 ; 2.574 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 6.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;36.928 ;23.310 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;16.256 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.198 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.187 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2411 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1917 ; 1.574 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3097 ; 2.520 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1207 ; 3.584 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1138 ; 5.648 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3T2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : FIXED-EXIT LN2 COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74283 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 54.794 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36300 REMARK 200 R SYM FOR SHELL (I) : 0.36300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UMG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG3350, 0.1 M HEPES/NAOH, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 56.26600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 56.26600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.56300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 56.26600 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 56.26600 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 75.56300 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 56.26600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 56.26600 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 75.56300 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 56.26600 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 56.26600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 75.56300 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 56.26600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.26600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 75.56300 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 56.26600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 56.26600 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 75.56300 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 56.26600 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 56.26600 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 75.56300 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 56.26600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 56.26600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.56300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 80620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -516.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -112.53200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 112.53200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 112.53200 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -112.53200 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -112.53200 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 112.53200 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 -112.53200 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 112.53200 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 581 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 606 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 98 REMARK 465 LYS A 99 REMARK 465 ASP A 100 REMARK 465 ALA A 101 REMARK 465 PHE A 102 REMARK 465 LEU A 224 REMARK 465 ILE A 225 REMARK 465 ALA A 226 REMARK 465 GLY A 227 REMARK 465 ARG A 228 REMARK 465 GLY A 390 REMARK 465 ALA A 391 REMARK 465 LYS A 392 REMARK 465 VAL A 393 REMARK 465 GLU A 394 REMARK 465 GLU A 395 REMARK 465 SER A 396 REMARK 465 GLN A 397 REMARK 465 HIS A 398 REMARK 465 ASP A 399 REMARK 465 LEU A 400 REMARK 465 GLU A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 164 O HOH A 687 2.00 REMARK 500 O HOH A 586 O HOH A 720 2.03 REMARK 500 OG SER A 189 O HOH A 691 2.05 REMARK 500 O HOH A 714 O HOH A 719 2.06 REMARK 500 CD ARG A 208 O HOH A 602 2.08 REMARK 500 O HOH A 697 O HOH A 722 2.08 REMARK 500 OE1 GLU A 164 O HOH A 686 2.14 REMARK 500 OE1 GLU A 354 O HOH A 592 2.14 REMARK 500 OE1 GLU A 64 O HOH A 571 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 574 O HOH A 574 8555 1.13 REMARK 500 O HOH A 554 O HOH A 554 3565 1.98 REMARK 500 O HOH A 619 O HOH A 619 8555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 48 CZ TYR A 48 CE2 0.078 REMARK 500 GLU A 117 CG GLU A 117 CD -0.099 REMARK 500 GLU A 185 CB GLU A 185 CG -0.115 REMARK 500 SER A 218 CB SER A 218 OG 0.115 REMARK 500 MET A 356 CG MET A 356 SD -0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 11 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 THR A 59 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 MET A 116 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 TYR A 144 CZ - CE2 - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 172 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 207 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 240 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 330 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 341 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 350 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 148 -4.01 -141.82 REMARK 500 GLN A 242 165.07 72.11 REMARK 500 TRP A 264 -147.61 51.29 REMARK 500 THR A 294 -96.20 -127.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 ASP A 52 OD2 86.5 REMARK 620 3 HOH A 415 O 84.5 171.0 REMARK 620 4 HOH A 416 O 89.4 95.7 84.8 REMARK 620 5 HOH A 417 O 86.2 92.9 85.9 170.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 409 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD1 REMARK 620 2 ASP A 53 OD2 90.1 REMARK 620 3 ASP A 132 OD1 93.6 85.8 REMARK 620 4 ASP A 234 OD2 178.8 89.8 87.6 REMARK 620 5 HOH A 426 O 91.0 178.1 95.7 89.0 REMARK 620 6 HOH A 427 O 94.8 87.2 169.1 83.9 91.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T2C RELATED DB: PDB REMARK 900 FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS REMARK 900 NEUTROPHILUS, DHAP-BOUND FORM REMARK 900 RELATED ID: 3T2D RELATED DB: PDB REMARK 900 FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS REMARK 900 NEUTROPHILUS, FBP-BOUND FORM REMARK 900 RELATED ID: 3T2E RELATED DB: PDB REMARK 900 FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS REMARK 900 NEUTROPHILUS, F6P-BOUND FORM REMARK 900 RELATED ID: 3T2F RELATED DB: PDB REMARK 900 FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS REMARK 900 NEUTROPHILUS, SOAKED WITH EDTA AND DHAP REMARK 900 RELATED ID: 3T2G RELATED DB: PDB REMARK 900 FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE FROM THERMOPROTEUS REMARK 900 NEUTROPHILUS, Y229F VARIANT WITH DHAP DBREF 3T2B A 1 399 UNP B1YAL1 B1YAL1_THENV 1 399 SEQADV 3T2B LEU A 400 UNP B1YAL1 EXPRESSION TAG SEQADV 3T2B GLU A 401 UNP B1YAL1 EXPRESSION TAG SEQADV 3T2B HIS A 402 UNP B1YAL1 EXPRESSION TAG SEQADV 3T2B HIS A 403 UNP B1YAL1 EXPRESSION TAG SEQADV 3T2B HIS A 404 UNP B1YAL1 EXPRESSION TAG SEQADV 3T2B HIS A 405 UNP B1YAL1 EXPRESSION TAG SEQADV 3T2B HIS A 406 UNP B1YAL1 EXPRESSION TAG SEQADV 3T2B HIS A 407 UNP B1YAL1 EXPRESSION TAG SEQRES 1 A 407 MET ARG VAL THR VAL SER ILE ILE LYS ALA ASP VAL GLY SEQRES 2 A 407 GLY PHE PRO GLY HIS ALA HIS VAL HIS PRO LYS MET LEU SEQRES 3 A 407 GLU TYR ALA ALA ALA LYS LEU LYS GLU ALA GLN LYS ARG SEQRES 4 A 407 GLY VAL ILE ILE ASP TYR PHE VAL TYR ASN VAL GLY ASP SEQRES 5 A 407 ASP ILE SER LEU LEU MET THR HIS THR LYS GLY GLU ASP SEQRES 6 A 407 ASN LYS ASP ILE HIS GLY LEU ALA TRP GLU THR PHE LYS SEQRES 7 A 407 GLU VAL THR ASP GLN ILE ALA LYS ARG PHE LYS LEU TYR SEQRES 8 A 407 GLY ALA GLY GLN ASP LEU LEU LYS ASP ALA PHE SER GLY SEQRES 9 A 407 ASN ILE ARG GLY MET GLY PRO GLN VAL ALA GLU MET GLU SEQRES 10 A 407 PHE GLU GLU ARG PRO SER GLU PRO ILE ILE ALA PHE ALA SEQRES 11 A 407 ALA ASP LYS THR GLU PRO GLY ALA PHE ASN LEU PRO LEU SEQRES 12 A 407 TYR LYS MET PHE ALA ASP PRO PHE THR THR ALA GLY LEU SEQRES 13 A 407 VAL ILE ASP PRO SER MET HIS GLU GLY PHE ILE PHE GLU SEQRES 14 A 407 VAL LEU ASP VAL VAL GLU HIS LYS VAL TYR LEU LEU LYS SEQRES 15 A 407 THR PRO GLU ASP ALA TYR SER LEU LEU GLY LEU ILE GLY SEQRES 16 A 407 THR THR GLY ARG TYR ILE ILE ARG LYS VAL PHE ARG ARG SEQRES 17 A 407 ALA ASP GLY ALA PRO ALA ALA ALA ASN SER VAL GLU ARG SEQRES 18 A 407 LEU SER LEU ILE ALA GLY ARG TYR VAL GLY LYS ASP ASP SEQRES 19 A 407 PRO VAL LEU LEU VAL ARG ALA GLN SER GLY LEU PRO ALA SEQRES 20 A 407 VAL GLY GLU VAL LEU GLU ALA PHE ALA HIS PRO HIS LEU SEQRES 21 A 407 VAL HIS GLY TRP MET ARG GLY SER HIS ALA GLY PRO LEU SEQRES 22 A 407 MET PRO ALA ARG PHE ILE SER VAL ASP PRO GLU ARG ARG SEQRES 23 A 407 ILE ALA ILE GLY PRO LYS MET THR ARG PHE ASP GLY PRO SEQRES 24 A 407 PRO LYS VAL GLY ALA LEU GLY PHE GLN LEU HIS GLU GLY SEQRES 25 A 407 TYR LEU GLU GLY GLY VAL ASP LEU PHE ASP ASP PRO ALA SEQRES 26 A 407 PHE ASP TYR VAL ARG GLN THR ALA ALA GLN ILE ALA ASP SEQRES 27 A 407 TYR ILE ARG ARG MET GLY PRO PHE GLN PRO HIS ARG LEU SEQRES 28 A 407 PRO PRO GLU GLU MET GLU TYR THR ALA LEU PRO LYS ILE SEQRES 29 A 407 LEU ALA LYS VAL LYS PRO TYR PRO ALA ASP GLN TYR GLU SEQRES 30 A 407 LYS ASP ARG LYS LYS TYR ILE GLU ALA VAL VAL LYS GLY SEQRES 31 A 407 ALA LYS VAL GLU GLU SER GLN HIS ASP LEU GLU HIS HIS SEQRES 32 A 407 HIS HIS HIS HIS HET MG A 408 1 HET MG A 409 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 2(MG 2+) FORMUL 4 HOH *320(H2 O) HELIX 1 1 HIS A 22 ARG A 39 1 18 HELIX 2 2 ASN A 66 ILE A 84 1 19 HELIX 3 3 GLU A 135 ALA A 138 5 4 HELIX 4 4 PHE A 139 ASP A 149 1 11 HELIX 5 5 ALA A 154 ASP A 159 1 6 HELIX 6 6 PRO A 160 HIS A 163 5 4 HELIX 7 7 ASP A 186 GLY A 195 1 10 HELIX 8 8 ALA A 247 ALA A 254 1 8 HELIX 9 9 TRP A 264 SER A 268 5 5 HELIX 10 10 THR A 294 GLY A 298 5 5 HELIX 11 11 ASP A 323 ARG A 342 1 20 HELIX 12 12 PRO A 352 MET A 356 5 5 HELIX 13 13 ALA A 360 VAL A 368 1 9 HELIX 14 14 PRO A 372 LYS A 389 1 18 SHEET 1 A 6 GLN A 112 GLU A 119 0 SHEET 2 A 6 ARG A 2 ALA A 10 -1 N ILE A 7 O ALA A 114 SHEET 3 A 6 ASP A 53 HIS A 60 -1 O HIS A 60 N THR A 4 SHEET 4 A 6 ASP A 44 VAL A 50 -1 N TYR A 48 O SER A 55 SHEET 5 A 6 ILE A 287 ILE A 289 1 O ALA A 288 N VAL A 47 SHEET 6 A 6 SER A 280 ASP A 282 -1 N ASP A 282 O ILE A 287 SHEET 1 B 8 LYS A 177 THR A 183 0 SHEET 2 B 8 PHE A 166 ASP A 172 -1 N PHE A 168 O LEU A 181 SHEET 3 B 8 TYR A 200 ARG A 207 -1 O ARG A 203 N GLU A 169 SHEET 4 B 8 PRO A 213 ASN A 217 -1 O ALA A 214 N VAL A 205 SHEET 5 B 8 VAL A 236 ARG A 240 -1 O ARG A 240 N ALA A 214 SHEET 6 B 8 GLU A 124 ASP A 132 -1 N PHE A 129 O LEU A 237 SHEET 7 B 8 LYS A 301 HIS A 310 -1 O LEU A 305 N ALA A 128 SHEET 8 B 8 MET A 274 PRO A 275 1 N MET A 274 O VAL A 302 SHEET 1 C 8 LYS A 177 THR A 183 0 SHEET 2 C 8 PHE A 166 ASP A 172 -1 N PHE A 168 O LEU A 181 SHEET 3 C 8 TYR A 200 ARG A 207 -1 O ARG A 203 N GLU A 169 SHEET 4 C 8 PRO A 213 ASN A 217 -1 O ALA A 214 N VAL A 205 SHEET 5 C 8 VAL A 236 ARG A 240 -1 O ARG A 240 N ALA A 214 SHEET 6 C 8 GLU A 124 ASP A 132 -1 N PHE A 129 O LEU A 237 SHEET 7 C 8 LYS A 301 HIS A 310 -1 O LEU A 305 N ALA A 128 SHEET 8 C 8 TYR A 313 ASP A 319 -1 O VAL A 318 N GLY A 306 SHEET 1 D 2 LEU A 260 GLY A 263 0 SHEET 2 D 2 HIS A 269 PRO A 272 -1 O HIS A 269 N GLY A 263 LINK OD2 ASP A 11 MG MG A 408 1555 1555 2.13 LINK OD2 ASP A 52 MG MG A 408 1555 1555 2.02 LINK OD1 ASP A 52 MG MG A 409 1555 1555 2.01 LINK OD2 ASP A 53 MG MG A 409 1555 1555 2.08 LINK OD1 ASP A 132 MG MG A 409 1555 1555 2.04 LINK OD2 ASP A 234 MG MG A 409 1555 1555 1.92 LINK MG MG A 408 O HOH A 415 1555 1555 2.18 LINK MG MG A 408 O HOH A 416 1555 1555 2.05 LINK MG MG A 408 O HOH A 417 1555 1555 2.08 LINK MG MG A 409 O HOH A 426 1555 1555 2.05 LINK MG MG A 409 O HOH A 427 1555 1555 2.09 CISPEP 1 PHE A 15 PRO A 16 0 -16.19 CISPEP 2 SER A 103 GLY A 104 0 -3.42 CISPEP 3 THR A 183 PRO A 184 0 10.41 CISPEP 4 GLY A 298 PRO A 299 0 -10.68 CISPEP 5 GLY A 316 GLY A 317 0 -3.31 CISPEP 6 GLN A 347 PRO A 348 0 8.70 SITE 1 AC1 6 ASP A 11 HIS A 18 ASP A 52 HOH A 415 SITE 2 AC1 6 HOH A 416 HOH A 417 SITE 1 AC2 7 ASP A 52 ASP A 53 ASP A 132 LYS A 133 SITE 2 AC2 7 ASP A 234 HOH A 426 HOH A 427 CRYST1 112.532 112.532 151.126 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006617 0.00000