PDB Short entry for 3T30 HEADER CHAPERONE 23-JUL-11 3T30 TITLE HUMAN NUCLEOPLASMIN (NPM2): A HISTONE CHAPERONE IN OOCYTES AND EARLY TITLE 2 EMBRYOS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPLASMIN-2; COMPND 3 CHAIN: B, E, D, A, C, H, I, J, F, G; COMPND 4 FRAGMENT: NPM2 OLIGOMERISATION DOMAIN (UNP RESIDUES 14-122); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NPM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET23 KEYWDS BETA-BARREL JELLY ROLL TOPOLOGY, HISTONE CHAPERONE, H2A-H2B DIMER AND KEYWDS 2 H3-H4 TETRAMER, OOCYTES AND EARLY EMBRYOS, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR O.PLATONOVA,J.F.HEAD,C.W.AKEY REVDAT 4 13-SEP-23 3T30 1 SEQADV REVDAT 3 17-JUL-19 3T30 1 REMARK REVDAT 2 30-NOV-11 3T30 1 JRNL REVDAT 1 21-SEP-11 3T30 0 JRNL AUTH O.PLATONOVA,I.V.AKEY,J.F.HEAD,C.W.AKEY JRNL TITL CRYSTAL STRUCTURE AND FUNCTION OF HUMAN NUCLEOPLASMIN JRNL TITL 2 (NPM2): A HISTONE CHAPERONE IN OOCYTES AND EMBRYOS. JRNL REF BIOCHEMISTRY V. 50 8078 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21863821 JRNL DOI 10.1021/BI2006652 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 82427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.350 REMARK 3 FREE R VALUE TEST SET COUNT : 1116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4691 - 3.7991 0.98 10517 148 0.1863 0.2137 REMARK 3 2 3.7991 - 3.0158 1.00 10620 147 0.1787 0.2388 REMARK 3 3 3.0158 - 2.6346 0.98 10471 142 0.2057 0.2855 REMARK 3 4 2.6346 - 2.3938 0.97 10267 142 0.1972 0.2701 REMARK 3 5 2.3938 - 2.2222 0.96 10129 140 0.1949 0.2375 REMARK 3 6 2.2222 - 2.0912 0.94 10002 143 0.1841 0.2412 REMARK 3 7 2.0912 - 1.9865 0.93 9840 125 0.1971 0.2615 REMARK 3 8 1.9865 - 1.9000 0.89 9465 129 0.2164 0.2506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 50.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.28540 REMARK 3 B22 (A**2) : -7.63960 REMARK 3 B33 (A**2) : -8.64580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.07460 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 7352 REMARK 3 ANGLE : 1.659 9961 REMARK 3 CHIRALITY : 0.134 1170 REMARK 3 PLANARITY : 0.009 1253 REMARK 3 DIHEDRAL : 17.882 2768 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 76 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86130 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1K5J (XENOPUS NUCLEOPLASMIN) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% V/V PEG 3350, 100 MM NACL, 25 MM REMARK 280 TRIS-HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.62000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, D, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, I, J, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 13 REMARK 465 VAL B 14 REMARK 465 PRO B 34 REMARK 465 GLN B 35 REMARK 465 LEU B 36 REMARK 465 GLU B 37 REMARK 465 GLY B 38 REMARK 465 LYS B 39 REMARK 465 GLN B 40 REMARK 465 ALA B 68 REMARK 465 ASN B 69 REMARK 465 GLN B 70 REMARK 465 GLU B 71 REMARK 465 ASP B 72 REMARK 465 LYS B 73 REMARK 465 LYS B 74 REMARK 465 MET B 75 REMARK 465 GLU B 122 REMARK 465 MET E 13 REMARK 465 VAL E 14 REMARK 465 THR E 15 REMARK 465 THR E 16 REMARK 465 GLN E 35 REMARK 465 LEU E 36 REMARK 465 GLU E 37 REMARK 465 GLY E 38 REMARK 465 LYS E 39 REMARK 465 ASN E 69 REMARK 465 GLN E 70 REMARK 465 GLU E 71 REMARK 465 ASP E 72 REMARK 465 LYS E 73 REMARK 465 LYS E 74 REMARK 465 MET E 75 REMARK 465 TYR E 121 REMARK 465 GLU E 122 REMARK 465 MET D 13 REMARK 465 VAL D 14 REMARK 465 GLN D 35 REMARK 465 LEU D 36 REMARK 465 GLU D 37 REMARK 465 GLY D 38 REMARK 465 LYS D 39 REMARK 465 GLN D 40 REMARK 465 SER D 41 REMARK 465 PRO D 67 REMARK 465 ALA D 68 REMARK 465 ASN D 69 REMARK 465 GLN D 70 REMARK 465 GLU D 71 REMARK 465 ASP D 72 REMARK 465 LYS D 73 REMARK 465 LYS D 74 REMARK 465 MET D 75 REMARK 465 GLN D 76 REMARK 465 GLU D 122 REMARK 465 MET A 13 REMARK 465 VAL A 14 REMARK 465 THR A 15 REMARK 465 GLN A 35 REMARK 465 LEU A 36 REMARK 465 GLU A 37 REMARK 465 GLY A 38 REMARK 465 LYS A 39 REMARK 465 GLN A 40 REMARK 465 SER A 41 REMARK 465 GLN A 70 REMARK 465 GLU A 71 REMARK 465 ASP A 72 REMARK 465 LYS A 73 REMARK 465 LYS A 74 REMARK 465 TYR A 121 REMARK 465 GLU A 122 REMARK 465 MET C 13 REMARK 465 VAL C 14 REMARK 465 GLN C 35 REMARK 465 LEU C 36 REMARK 465 GLU C 37 REMARK 465 GLY C 38 REMARK 465 LYS C 39 REMARK 465 ALA C 68 REMARK 465 ASN C 69 REMARK 465 GLN C 70 REMARK 465 GLU C 71 REMARK 465 ASP C 72 REMARK 465 LYS C 73 REMARK 465 LYS C 74 REMARK 465 GLU C 122 REMARK 465 MET H 13 REMARK 465 VAL H 14 REMARK 465 GLN H 35 REMARK 465 LEU H 36 REMARK 465 GLU H 37 REMARK 465 GLY H 38 REMARK 465 LYS H 39 REMARK 465 GLN H 40 REMARK 465 ALA H 68 REMARK 465 ASN H 69 REMARK 465 GLN H 70 REMARK 465 GLU H 71 REMARK 465 ASP H 72 REMARK 465 LYS H 73 REMARK 465 LYS H 74 REMARK 465 MET H 75 REMARK 465 GLU H 122 REMARK 465 MET I 13 REMARK 465 VAL I 14 REMARK 465 GLN I 35 REMARK 465 LEU I 36 REMARK 465 GLU I 37 REMARK 465 GLY I 38 REMARK 465 LYS I 39 REMARK 465 GLN I 40 REMARK 465 ALA I 68 REMARK 465 ASN I 69 REMARK 465 GLN I 70 REMARK 465 GLU I 71 REMARK 465 ASP I 72 REMARK 465 LYS I 73 REMARK 465 LYS I 74 REMARK 465 MET I 75 REMARK 465 GLN I 76 REMARK 465 GLU I 122 REMARK 465 MET J 13 REMARK 465 VAL J 14 REMARK 465 ARG J 33 REMARK 465 PRO J 34 REMARK 465 GLN J 35 REMARK 465 LEU J 36 REMARK 465 GLU J 37 REMARK 465 GLY J 38 REMARK 465 LYS J 39 REMARK 465 GLN J 40 REMARK 465 SER J 41 REMARK 465 ASN J 69 REMARK 465 GLN J 70 REMARK 465 GLU J 71 REMARK 465 ASP J 72 REMARK 465 LYS J 73 REMARK 465 LYS J 74 REMARK 465 MET J 75 REMARK 465 TYR J 121 REMARK 465 GLU J 122 REMARK 465 MET F 13 REMARK 465 VAL F 14 REMARK 465 THR F 15 REMARK 465 LEU F 36 REMARK 465 GLU F 37 REMARK 465 GLY F 38 REMARK 465 LYS F 39 REMARK 465 GLN F 40 REMARK 465 SER F 41 REMARK 465 ALA F 68 REMARK 465 ASN F 69 REMARK 465 GLN F 70 REMARK 465 GLU F 71 REMARK 465 ASP F 72 REMARK 465 LYS F 73 REMARK 465 LYS F 74 REMARK 465 MET F 75 REMARK 465 TYR F 121 REMARK 465 GLU F 122 REMARK 465 MET G 13 REMARK 465 VAL G 14 REMARK 465 LEU G 36 REMARK 465 GLU G 37 REMARK 465 GLY G 38 REMARK 465 LYS G 39 REMARK 465 GLN G 40 REMARK 465 SER G 41 REMARK 465 ASN G 69 REMARK 465 GLN G 70 REMARK 465 GLU G 71 REMARK 465 ASP G 72 REMARK 465 LYS G 73 REMARK 465 LYS G 74 REMARK 465 TYR G 121 REMARK 465 GLU G 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CZ3 TRP F 19 C GLY F 20 1.79 REMARK 500 CZ3 TRP F 19 N CYS F 21 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU E 26 CZ2 TRP F 30 1655 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 47 -68.65 -92.98 REMARK 500 LYS B 56 -168.77 -70.85 REMARK 500 VAL B 87 -50.75 -127.83 REMARK 500 TRP E 30 97.75 -163.66 REMARK 500 SER E 41 40.18 -156.36 REMARK 500 HIS E 47 -62.17 -102.07 REMARK 500 HIS D 47 -69.37 -100.98 REMARK 500 ALA D 55 159.52 -49.90 REMARK 500 HIS A 47 -61.71 -97.57 REMARK 500 MET A 93 51.83 -111.16 REMARK 500 VAL C 87 -52.85 -128.96 REMARK 500 ARG H 33 75.80 -157.72 REMARK 500 HIS H 47 -65.41 -95.32 REMARK 500 ARG I 33 56.32 -142.45 REMARK 500 HIS I 47 -65.90 -91.71 REMARK 500 VAL I 87 -49.80 -130.67 REMARK 500 VAL J 87 -50.93 -125.49 REMARK 500 HIS F 47 -66.03 -100.23 REMARK 500 VAL F 87 -50.91 -126.69 REMARK 500 ARG G 27 86.18 -152.76 REMARK 500 HIS G 47 -63.14 -100.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 3T30 B 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 DBREF 3T30 E 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 DBREF 3T30 D 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 DBREF 3T30 A 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 DBREF 3T30 C 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 DBREF 3T30 H 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 DBREF 3T30 I 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 DBREF 3T30 J 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 DBREF 3T30 F 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 DBREF 3T30 G 14 122 UNP Q86SE8 NPM2_HUMAN 14 122 SEQADV 3T30 MET B 13 UNP Q86SE8 INITIATING METHIONINE SEQADV 3T30 MET E 13 UNP Q86SE8 INITIATING METHIONINE SEQADV 3T30 MET D 13 UNP Q86SE8 INITIATING METHIONINE SEQADV 3T30 MET A 13 UNP Q86SE8 INITIATING METHIONINE SEQADV 3T30 MET C 13 UNP Q86SE8 INITIATING METHIONINE SEQADV 3T30 MET H 13 UNP Q86SE8 INITIATING METHIONINE SEQADV 3T30 MET I 13 UNP Q86SE8 INITIATING METHIONINE SEQADV 3T30 MET J 13 UNP Q86SE8 INITIATING METHIONINE SEQADV 3T30 MET F 13 UNP Q86SE8 INITIATING METHIONINE SEQADV 3T30 MET G 13 UNP Q86SE8 INITIATING METHIONINE SEQRES 1 B 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 B 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 B 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 B 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 B 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 B 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 B 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 B 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 B 110 GLY GLN GLU ARG TYR GLU SEQRES 1 E 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 E 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 E 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 E 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 E 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 E 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 E 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 E 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 E 110 GLY GLN GLU ARG TYR GLU SEQRES 1 D 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 D 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 D 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 D 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 D 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 D 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 D 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 D 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 D 110 GLY GLN GLU ARG TYR GLU SEQRES 1 A 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 A 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 A 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 A 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 A 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 A 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 A 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 A 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 A 110 GLY GLN GLU ARG TYR GLU SEQRES 1 C 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 C 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 C 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 C 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 C 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 C 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 C 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 C 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 C 110 GLY GLN GLU ARG TYR GLU SEQRES 1 H 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 H 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 H 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 H 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 H 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 H 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 H 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 H 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 H 110 GLY GLN GLU ARG TYR GLU SEQRES 1 I 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 I 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 I 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 I 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 I 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 I 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 I 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 I 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 I 110 GLY GLN GLU ARG TYR GLU SEQRES 1 J 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 J 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 J 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 J 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 J 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 J 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 J 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 J 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 J 110 GLY GLN GLU ARG TYR GLU SEQRES 1 F 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 F 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 F 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 F 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 F 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 F 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 F 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 F 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 F 110 GLY GLN GLU ARG TYR GLU SEQRES 1 G 110 MET VAL THR THR VAL LEU TRP GLY CYS GLU LEU SER GLN SEQRES 2 G 110 GLU ARG ARG THR TRP THR PHE ARG PRO GLN LEU GLU GLY SEQRES 3 G 110 LYS GLN SER CYS ARG LEU LEU LEU HIS THR ILE CYS LEU SEQRES 4 G 110 GLY GLU LYS ALA LYS GLU GLU MET HIS ARG VAL GLU ILE SEQRES 5 G 110 LEU PRO PRO ALA ASN GLN GLU ASP LYS LYS MET GLN PRO SEQRES 6 G 110 VAL THR ILE ALA SER LEU GLN ALA SER VAL LEU PRO MET SEQRES 7 G 110 VAL SER MET VAL GLY VAL GLN LEU SER PRO PRO VAL THR SEQRES 8 G 110 PHE GLN LEU ARG ALA GLY SER GLY PRO VAL PHE LEU SER SEQRES 9 G 110 GLY GLN GLU ARG TYR GLU FORMUL 11 HOH *672(H2 O) HELIX 1 1 SER J 24 ARG J 27 5 4 SHEET 1 A 4 THR B 16 LEU B 23 0 SHEET 2 A 4 VAL B 113 ARG B 120 -1 O VAL B 113 N LEU B 23 SHEET 3 A 4 ARG B 43 LEU B 51 -1 N LEU B 45 O GLN B 118 SHEET 4 A 4 MET B 90 LEU B 98 -1 O LEU B 98 N LEU B 44 SHEET 1 B 4 THR B 29 PHE B 32 0 SHEET 2 B 4 VAL B 102 ALA B 108 -1 O VAL B 102 N PHE B 32 SHEET 3 B 4 HIS B 60 LEU B 65 -1 N LEU B 65 O THR B 103 SHEET 4 B 4 VAL B 78 LEU B 83 -1 O LEU B 83 N HIS B 60 SHEET 1 C 4 LEU E 18 LEU E 23 0 SHEET 2 C 4 VAL E 113 GLU E 119 -1 O VAL E 113 N LEU E 23 SHEET 3 C 4 LEU E 44 LEU E 51 -1 N CYS E 50 O PHE E 114 SHEET 4 C 4 MET E 90 LEU E 98 -1 O MET E 93 N HIS E 47 SHEET 1 D 4 THR E 29 PHE E 32 0 SHEET 2 D 4 VAL E 102 ALA E 108 -1 O VAL E 102 N PHE E 32 SHEET 3 D 4 HIS E 60 LEU E 65 -1 N LEU E 65 O THR E 103 SHEET 4 D 4 VAL E 78 LEU E 83 -1 O LEU E 83 N HIS E 60 SHEET 1 E 4 THR D 16 LEU D 23 0 SHEET 2 E 4 VAL D 113 ARG D 120 -1 O GLU D 119 N VAL D 17 SHEET 3 E 4 ARG D 43 LEU D 51 -1 N CYS D 50 O PHE D 114 SHEET 4 E 4 MET D 90 LEU D 98 -1 O MET D 93 N HIS D 47 SHEET 1 F 4 THR D 29 PHE D 32 0 SHEET 2 F 4 VAL D 102 ALA D 108 -1 O VAL D 102 N PHE D 32 SHEET 3 F 4 HIS D 60 LEU D 65 -1 N LEU D 65 O THR D 103 SHEET 4 F 4 VAL D 78 LEU D 83 -1 O LEU D 83 N HIS D 60 SHEET 1 G 4 VAL A 17 LEU A 23 0 SHEET 2 G 4 VAL A 113 ARG A 120 -1 O VAL A 113 N LEU A 23 SHEET 3 G 4 ARG A 43 LEU A 51 -1 N LEU A 45 O GLN A 118 SHEET 4 G 4 MET A 90 LEU A 98 -1 O LEU A 98 N LEU A 44 SHEET 1 H 4 THR A 29 PHE A 32 0 SHEET 2 H 4 VAL A 102 ALA A 108 -1 O VAL A 102 N PHE A 32 SHEET 3 H 4 HIS A 60 LEU A 65 -1 N GLU A 63 O GLN A 105 SHEET 4 H 4 VAL A 78 LEU A 83 -1 O LEU A 83 N HIS A 60 SHEET 1 I 4 THR C 16 LEU C 23 0 SHEET 2 I 4 VAL C 113 ARG C 120 -1 O VAL C 113 N LEU C 23 SHEET 3 I 4 ARG C 43 LEU C 51 -1 N LEU C 45 O GLN C 118 SHEET 4 I 4 MET C 90 LEU C 98 -1 O MET C 93 N HIS C 47 SHEET 1 J 4 THR C 29 PHE C 32 0 SHEET 2 J 4 VAL C 102 ALA C 108 -1 O PHE C 104 N TRP C 30 SHEET 3 J 4 HIS C 60 LEU C 65 -1 N GLU C 63 O GLN C 105 SHEET 4 J 4 VAL C 78 LEU C 83 -1 O LEU C 83 N HIS C 60 SHEET 1 K 4 THR H 16 LEU H 23 0 SHEET 2 K 4 VAL H 113 ARG H 120 -1 O VAL H 113 N LEU H 23 SHEET 3 K 4 ARG H 43 LEU H 51 -1 N LEU H 45 O GLN H 118 SHEET 4 K 4 MET H 90 LEU H 98 -1 O MET H 93 N HIS H 47 SHEET 1 L 4 THR H 29 PHE H 32 0 SHEET 2 L 4 VAL H 102 ALA H 108 -1 O PHE H 104 N TRP H 30 SHEET 3 L 4 HIS H 60 LEU H 65 -1 N LEU H 65 O THR H 103 SHEET 4 L 4 VAL H 78 LEU H 83 -1 O LEU H 83 N HIS H 60 SHEET 1 M 4 THR I 16 LEU I 23 0 SHEET 2 M 4 VAL I 113 ARG I 120 -1 O GLU I 119 N VAL I 17 SHEET 3 M 4 ARG I 43 LEU I 51 -1 N LEU I 45 O GLN I 118 SHEET 4 M 4 MET I 90 LEU I 98 -1 O MET I 93 N HIS I 47 SHEET 1 N 4 THR I 29 PHE I 32 0 SHEET 2 N 4 VAL I 102 ALA I 108 -1 O VAL I 102 N PHE I 32 SHEET 3 N 4 HIS I 60 LEU I 65 -1 N GLU I 63 O GLN I 105 SHEET 4 N 4 VAL I 78 LEU I 83 -1 O ILE I 80 N VAL I 62 SHEET 1 O 4 VAL J 17 LEU J 23 0 SHEET 2 O 4 VAL J 113 ARG J 120 -1 O VAL J 113 N LEU J 23 SHEET 3 O 4 ARG J 43 LEU J 51 -1 N CYS J 50 O PHE J 114 SHEET 4 O 4 MET J 90 LEU J 98 -1 O MET J 93 N HIS J 47 SHEET 1 P 4 THR J 29 PHE J 32 0 SHEET 2 P 4 VAL J 102 ALA J 108 -1 O VAL J 102 N PHE J 32 SHEET 3 P 4 HIS J 60 LEU J 65 -1 N GLU J 63 O GLN J 105 SHEET 4 P 4 VAL J 78 LEU J 83 -1 O VAL J 78 N ILE J 64 SHEET 1 Q 4 VAL F 17 LEU F 23 0 SHEET 2 Q 4 VAL F 113 ARG F 120 -1 O VAL F 113 N LEU F 23 SHEET 3 Q 4 ARG F 43 LEU F 51 -1 N LEU F 45 O GLN F 118 SHEET 4 Q 4 MET F 90 LEU F 98 -1 O MET F 93 N HIS F 47 SHEET 1 R 4 THR F 29 PHE F 32 0 SHEET 2 R 4 VAL F 102 ALA F 108 -1 O VAL F 102 N PHE F 32 SHEET 3 R 4 HIS F 60 LEU F 65 -1 N GLU F 63 O GLN F 105 SHEET 4 R 4 VAL F 78 LEU F 83 -1 O LEU F 83 N HIS F 60 SHEET 1 S 4 VAL G 17 LEU G 23 0 SHEET 2 S 4 VAL G 113 ARG G 120 -1 O GLU G 119 N VAL G 17 SHEET 3 S 4 ARG G 43 LEU G 51 -1 N CYS G 50 O PHE G 114 SHEET 4 S 4 MET G 90 LEU G 98 -1 O LEU G 98 N LEU G 44 SHEET 1 T 4 THR G 29 PHE G 32 0 SHEET 2 T 4 VAL G 102 ALA G 108 -1 O VAL G 102 N PHE G 32 SHEET 3 T 4 HIS G 60 ILE G 64 -1 N GLU G 63 O GLN G 105 SHEET 4 T 4 VAL G 78 LEU G 83 -1 O LEU G 83 N HIS G 60 CISPEP 1 PRO B 66 PRO B 67 0 -5.69 CISPEP 2 PRO B 100 PRO B 101 0 3.90 CISPEP 3 GLY B 111 PRO B 112 0 7.03 CISPEP 4 PRO E 100 PRO E 101 0 -1.44 CISPEP 5 GLY E 111 PRO E 112 0 2.03 CISPEP 6 PRO D 100 PRO D 101 0 0.52 CISPEP 7 GLY D 111 PRO D 112 0 1.47 CISPEP 8 PRO A 100 PRO A 101 0 1.24 CISPEP 9 GLY A 111 PRO A 112 0 1.11 CISPEP 10 PRO C 100 PRO C 101 0 0.07 CISPEP 11 GLY C 111 PRO C 112 0 3.44 CISPEP 12 PRO H 66 PRO H 67 0 -2.34 CISPEP 13 PRO H 100 PRO H 101 0 -1.68 CISPEP 14 GLY H 111 PRO H 112 0 -0.07 CISPEP 15 PRO I 66 PRO I 67 0 2.05 CISPEP 16 PRO I 100 PRO I 101 0 -0.36 CISPEP 17 GLY I 111 PRO I 112 0 1.89 CISPEP 18 PRO J 66 PRO J 67 0 8.25 CISPEP 19 PRO J 100 PRO J 101 0 2.24 CISPEP 20 GLY J 111 PRO J 112 0 2.09 CISPEP 21 PRO F 100 PRO F 101 0 0.65 CISPEP 22 GLY F 111 PRO F 112 0 5.66 CISPEP 23 PRO G 100 PRO G 101 0 -0.61 CISPEP 24 GLY G 111 PRO G 112 0 4.26 CRYST1 49.030 107.240 108.700 90.00 102.54 90.00 P 1 21 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020395 0.000000 0.004536 0.00000 SCALE2 0.000000 0.009325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009425 0.00000