PDB Short entry for 3T5G HEADER SIGNALING PROTEIN,LIPID BINDING PROTEIN 27-JUL-11 3T5G TITLE STRUCTURE OF FULLY MODIFIED FARNESYLATED RHEB IN COMPLEX WITH PDE6D COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN RHEB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAS HOMOLOG ENRICHED IN BRAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC COMPND 8 PHOSPHODIESTERASE SUBUNIT DELTA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: GMP-PDE DELTA, PROTEIN P17; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RHEB, RHEB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PDE6D, PDED; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBULIN-LIKE BETA SANDWITCH, PDE DELTA, RHEB, FARNESYL, KEYWDS 2 SIGNALING PROTEIN, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ISMAIL,Y.-X.CHEN,A.WITTINGHOFER REVDAT 5 13-SEP-23 3T5G 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3T5G 1 REMARK REVDAT 3 25-SEP-13 3T5G 1 REMARK REVDAT 2 30-NOV-11 3T5G 1 JRNL REVDAT 1 26-OCT-11 3T5G 0 JRNL AUTH S.A.ISMAIL,Y.X.CHEN,A.RUSINOVA,A.CHANDRA,M.BIERBAUM, JRNL AUTH 2 L.GREMER,G.TRIOLA,H.WALDMANN,P.I.BASTIAENS,A.WITTINGHOFER JRNL TITL ARL2-GTP AND ARL3-GTP REGULATE A GDI-LIKE TRANSPORT SYSTEM JRNL TITL 2 FOR FARNESYLATED CARGO. JRNL REF NAT.CHEM.BIOL. V. 7 942 2011 JRNL REFN ISSN 1552-4450 JRNL PMID 22002721 JRNL DOI 10.1038/NCHEMBIO.686 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2731 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2549 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 416 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2656 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3585 ; 1.078 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 5.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;40.091 ;24.538 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 486 ;11.983 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ; 8.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1949 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1588 ; 0.568 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2572 ; 1.092 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1068 ; 1.606 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1010 ; 2.699 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SAGITALLY - HORIZONTALLY FOCUSED REMARK 200 SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40454 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1XTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS 8.5, AND 12.5 % PEG8000, PH REMARK 280 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.94500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.26000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.26000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.94500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 108 REMARK 465 LYS A 109 REMARK 465 VAL A 110 REMARK 465 GLN A 111 REMARK 465 ASP A 171 REMARK 465 GLY A 172 REMARK 465 ALA A 173 REMARK 465 CYS A 174 REMARK 465 SER A 175 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 35 O HOH A 462 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 120 32.35 71.02 REMARK 500 ASP B 136 -116.66 59.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 20 OG REMARK 620 2 GDP A 201 O3B 93.3 REMARK 620 3 HOH A 395 O 173.4 87.8 REMARK 620 4 HOH A 396 O 89.0 175.2 90.3 REMARK 620 5 HOH A 434 O 84.8 90.0 88.7 94.4 REMARK 620 6 HOH A 449 O 92.6 87.3 94.0 88.4 176.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAR A 2010 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T5I RELATED DB: PDB DBREF 3T5G A 1 181 UNP Q15382 RHEB_HUMAN 1 181 DBREF 3T5G B 1 150 UNP O43924 PDE6D_HUMAN 1 150 SEQADV 3T5G CYS A 174 UNP Q15382 ALA 174 ENGINEERED MUTATION SEQADV 3T5G GLY B -1 UNP O43924 EXPRESSION TAG SEQADV 3T5G SER B 0 UNP O43924 EXPRESSION TAG SEQRES 1 A 181 MET PRO GLN SER LYS SER ARG LYS ILE ALA ILE LEU GLY SEQRES 2 A 181 TYR ARG SER VAL GLY LYS SER SER LEU THR ILE GLN PHE SEQRES 3 A 181 VAL GLU GLY GLN PHE VAL ASP SER TYR ASP PRO THR ILE SEQRES 4 A 181 GLU ASN THR PHE THR LYS LEU ILE THR VAL ASN GLY GLN SEQRES 5 A 181 GLU TYR HIS LEU GLN LEU VAL ASP THR ALA GLY GLN ASP SEQRES 6 A 181 GLU TYR SER ILE PHE PRO GLN THR TYR SER ILE ASP ILE SEQRES 7 A 181 ASN GLY TYR ILE LEU VAL TYR SER VAL THR SER ILE LYS SEQRES 8 A 181 SER PHE GLU VAL ILE LYS VAL ILE HIS GLY LYS LEU LEU SEQRES 9 A 181 ASP MET VAL GLY LYS VAL GLN ILE PRO ILE MET LEU VAL SEQRES 10 A 181 GLY ASN LYS LYS ASP LEU HIS MET GLU ARG VAL ILE SER SEQRES 11 A 181 TYR GLU GLU GLY LYS ALA LEU ALA GLU SER TRP ASN ALA SEQRES 12 A 181 ALA PHE LEU GLU SER SER ALA LYS GLU ASN GLN THR ALA SEQRES 13 A 181 VAL ASP VAL PHE ARG ARG ILE ILE LEU GLU ALA GLU LYS SEQRES 14 A 181 MET ASP GLY ALA CYS SER GLN GLY LYS SER SER CMT SEQRES 1 B 152 GLY SER MET SER ALA LYS ASP GLU ARG ALA ARG GLU ILE SEQRES 2 B 152 LEU ARG GLY PHE LYS LEU ASN TRP MET ASN LEU ARG ASP SEQRES 3 B 152 ALA GLU THR GLY LYS ILE LEU TRP GLN GLY THR GLU ASP SEQRES 4 B 152 LEU SER VAL PRO GLY VAL GLU HIS GLU ALA ARG VAL PRO SEQRES 5 B 152 LYS LYS ILE LEU LYS CYS LYS ALA VAL SER ARG GLU LEU SEQRES 6 B 152 ASN PHE SER SER THR GLU GLN MET GLU LYS PHE ARG LEU SEQRES 7 B 152 GLU GLN LYS VAL TYR PHE LYS GLY GLN CYS LEU GLU GLU SEQRES 8 B 152 TRP PHE PHE GLU PHE GLY PHE VAL ILE PRO ASN SER THR SEQRES 9 B 152 ASN THR TRP GLN SER LEU ILE GLU ALA ALA PRO GLU SER SEQRES 10 B 152 GLN MET MET PRO ALA SER VAL LEU THR GLY ASN VAL ILE SEQRES 11 B 152 ILE GLU THR LYS PHE PHE ASP ASP ASP LEU LEU VAL SER SEQRES 12 B 152 THR SER ARG VAL ARG LEU PHE TYR VAL MODRES 3T5G CMT A 181 CYS O-METHYLCYSTEINE HET CMT A 181 8 HET GDP A 201 28 HET MG A 202 1 HET FAR A2010 15 HETNAM CMT O-METHYLCYSTEINE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM FAR FARNESYL FORMUL 1 CMT C4 H9 N O2 S FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 MG MG 2+ FORMUL 5 FAR C15 H26 FORMUL 6 HOH *416(H2 O) HELIX 1 1 GLY A 18 GLY A 29 1 12 HELIX 2 2 PRO A 71 SER A 75 5 5 HELIX 3 3 SER A 89 VAL A 107 1 19 HELIX 4 4 SER A 130 TRP A 141 1 12 HELIX 5 5 GLU A 152 LYS A 169 1 18 HELIX 6 6 LYS B 4 GLY B 14 1 11 HELIX 7 7 LYS B 52 CYS B 56 5 5 HELIX 8 8 PRO B 113 MET B 117 5 5 HELIX 9 9 PRO B 119 THR B 124 1 6 SHEET 1 A 6 ASN A 41 VAL A 49 0 SHEET 2 A 6 GLN A 52 ASP A 60 -1 O LEU A 58 N PHE A 43 SHEET 3 A 6 SER A 4 GLY A 13 1 N ILE A 9 O VAL A 59 SHEET 4 A 6 GLY A 80 SER A 86 1 O VAL A 84 N LEU A 12 SHEET 5 A 6 ILE A 114 ASN A 119 1 O ASN A 119 N TYR A 85 SHEET 6 A 6 ALA A 144 GLU A 147 1 O ALA A 144 N LEU A 116 SHEET 1 B 4 ILE B 30 GLY B 34 0 SHEET 2 B 4 PHE B 15 ASP B 24 -1 N LEU B 22 O LEU B 31 SHEET 3 B 4 ALA B 58 SER B 67 -1 O ASN B 64 N TRP B 19 SHEET 4 B 4 SER B 101 GLU B 110 -1 O ILE B 109 N VAL B 59 SHEET 1 C 5 GLU B 44 PRO B 50 0 SHEET 2 C 5 LEU B 138 VAL B 150 1 O ARG B 146 N HIS B 45 SHEET 3 C 5 VAL B 127 ASP B 135 -1 N PHE B 133 O SER B 141 SHEET 4 C 5 MET B 71 PHE B 82 -1 N TYR B 81 O ILE B 128 SHEET 5 C 5 GLN B 85 VAL B 97 -1 O LEU B 87 N VAL B 80 LINK C SER A 180 N CMT A 181 1555 1555 1.36 LINK SG CMT A 181 C1 FAR A2010 1555 1555 2.44 LINK OG SER A 20 MG MG A 202 1555 1555 2.10 LINK O3B GDP A 201 MG MG A 202 1555 1555 2.07 LINK MG MG A 202 O HOH A 395 1555 1555 2.08 LINK MG MG A 202 O HOH A 396 1555 1555 2.12 LINK MG MG A 202 O HOH A 434 1555 1555 2.11 LINK MG MG A 202 O HOH A 449 1555 1555 2.21 SITE 1 AC1 25 SER A 16 VAL A 17 GLY A 18 LYS A 19 SITE 2 AC1 25 SER A 20 SER A 21 PHE A 31 ASN A 119 SITE 3 AC1 25 LYS A 120 ASP A 122 LEU A 123 SER A 149 SITE 4 AC1 25 ALA A 150 LYS A 151 HOH A 197 MG A 202 SITE 5 AC1 25 HOH A 212 HOH A 288 HOH A 294 HOH A 298 SITE 6 AC1 25 HOH A 304 HOH A 362 HOH A 395 HOH A 434 SITE 7 AC1 25 HOH A 449 SITE 1 AC2 6 SER A 20 GDP A 201 HOH A 395 HOH A 396 SITE 2 AC2 6 HOH A 434 HOH A 449 SITE 1 AC3 7 SER A 180 CMT A 181 MET B 20 LEU B 38 SITE 2 AC3 7 ILE B 53 GLN B 78 TYR B 149 CRYST1 47.890 57.380 134.520 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020881 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007434 0.00000