PDB Short entry for 3T5L
HEADER    DNA/TRANSFERASE                         27-JUL-11   3T5L              
TITLE     TERNARY COMPLEX OF HNE ADDUCT MODIFIED DNA (5'-CXG-3' VS 14-MER) WITH 
TITLE    2 DPO4 AND INCOMING DDGT                                               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE IV;                                         
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: POL IV;                                                     
COMPND   5 EC: 2.7.7.7;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: DNA (5'-D(*CP*AP*CP*(HN0)                                  
COMPND   9 P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3');                        
COMPND  10 CHAIN: B;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 OTHER_DETAILS: MODIFIED DNA TEMPLATE;                                
COMPND  13 MOL_ID: 3;                                                           
COMPND  14 MOLECULE: DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3');  
COMPND  15 CHAIN: C;                                                            
COMPND  16 ENGINEERED: YES;                                                     
COMPND  17 OTHER_DETAILS: DNA PRIMER                                            
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2;                     
SOURCE   3 ORGANISM_TAXID: 273057;                                              
SOURCE   4 STRAIN: ATCC 35092 / DSM 1617 / JCM 11322 / P2;                      
SOURCE   5 GENE: DBH, DPO4, SSO2448;                                            
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 SYNTHETIC: YES;                                                      
SOURCE  10 OTHER_DETAILS: SYNTHETIC CONSTRUCT;                                  
SOURCE  11 MOL_ID: 3;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 OTHER_DETAILS: SYNTHETIC CONSTRUCT                                   
KEYWDS    TERNARY COMPLEX OF DPO4-DNA-DGTP, DNA POLYMERASE, HNE, DNA-           
KEYWDS   2 TRANSFERASE COMPLEX                                                  
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    S.BANERJEE,P.P.CHRISTOV,A.KOZEKOVA,C.J.RIZZO,M.P.STONE                
REVDAT   3   28-FEB-24 3T5L    1       REMARK DBREF  LINK                       
REVDAT   2   09-JAN-13 3T5L    1       JRNL                                     
REVDAT   1   15-FEB-12 3T5L    0                                                
JRNL        AUTH   S.BANERJEE,P.P.CHRISTOV,A.KOZEKOVA,C.J.RIZZO,M.EGLI,         
JRNL        AUTH 2 M.P.STONE                                                    
JRNL        TITL   REPLICATION BYPASS OF THE TRANS-4-HYDROXYNONENAL-DERIVED     
JRNL        TITL 2 (6S,8R,11S)-1,N(2)-DEOXYGUANOSINE DNA ADDUCT BY THE          
JRNL        TITL 3 SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV.                   
JRNL        REF    CHEM.RES.TOXICOL.             V.  25   422 2012              
JRNL        REFN                   ISSN 0893-228X                               
JRNL        PMID   22313351                                                     
JRNL        DOI    10.1021/TX200460J                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : NULL                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 27.19                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 161352.520                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 98.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 11955                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.204                           
REMARK   3   FREE R VALUE                     : 0.255                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 9.800                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1167                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.007                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.90                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 3.08                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 97.40                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 1731                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3180                       
REMARK   3   BIN FREE R VALUE                    : 0.4060                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 9.60                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 183                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.030                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2744                                    
REMARK   3   NUCLEIC ACID ATOMS       : 638                                     
REMARK   3   HETEROGEN ATOMS          : 34                                      
REMARK   3   SOLVENT ATOMS            : 110                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 35.00                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 48.00                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 9.55000                                              
REMARK   3    B22 (A**2) : -4.33000                                             
REMARK   3    B33 (A**2) : -5.22000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.35                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.29                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 50.0                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.46                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.42                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.007                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.400                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 21.00                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.190                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.410 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.490 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 2.200 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 3.690 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.31                                                 
REMARK   3   BSOL        : 21.65                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : DNA-RNA_HNE.PARAM                              
REMARK   3  PARAMETER FILE  3  : DGTP.PARAM                                     
REMARK   3  PARAMETER FILE  4  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  5  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : DNA-RNA_HNE.TOP                                
REMARK   3  TOPOLOGY FILE  3   : DGTP.TOP                                       
REMARK   3  TOPOLOGY FILE  4   : ION.TOP                                        
REMARK   3  TOPOLOGY FILE  5   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: RESOLUTION-DEPENDENT WEIGHTING SCHEME     
REMARK   3  USE OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED               
REMARK   4                                                                      
REMARK   4 3T5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-11.                  
REMARK 100 THE DEPOSITION ID IS D_1000067065.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : NULL                               
REMARK 200  PH                             : 7.4                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 21-ID-D                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.08                               
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 300 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : NULL                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.600                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 30.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.6                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 54.08                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL (PH 7.4 AT 25 C)          
REMARK 280  BUFFER, 12 20% POLYETHYLENE GLYCOL 3350 (W/V), 100 MM CA(OAC)2,     
REMARK 280  AND 2.5% GLYCEROL (V/V). , VAPOR DIFFUSION, TEMPERATURE 298K        
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X+1/2,Y+1/2,-Z                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000       47.56200            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       51.85800            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       47.56200            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       51.85800            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19920 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A  10       48.21     20.54                                   
REMARK 500    ASN A  20       73.87   -162.42                                   
REMARK 500    GLU A  94       40.10    -76.18                                   
REMARK 500    TYR A  95       -6.48   -151.91                                   
REMARK 500    SER A  96      143.02    175.84                                   
REMARK 500    ASP A 113      -74.10    -68.36                                   
REMARK 500    LYS A 114      -76.13    -35.12                                   
REMARK 500    SER A 145     -165.91   -160.52                                   
REMARK 500    SER A 207       44.20    -96.27                                   
REMARK 500    ASN A 234       60.26   -165.23                                   
REMARK 500    ASP A 277       88.15     32.10                                   
REMARK 500    LYS A 278      -28.13     86.54                                   
REMARK 500    ASP A 292       40.94    -97.22                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A1001  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A   7   OD1                                                    
REMARK 620 2 PHE A   8   O    88.6                                              
REMARK 620 3 ASP A 105   OD2  71.3  84.5                                        
REMARK 620 4 DGT A 600   O3A 139.2 130.2  97.4                                  
REMARK 620 5 DGT A 600   O2G 136.9  68.4 137.2  77.9                            
REMARK 620 6 DGT A 600   O2B 163.0  82.5  93.3  47.7  52.0                      
REMARK 620 7 DGT A 600   O5' 110.9 124.9  57.4  40.7 112.1  63.8                
REMARK 620 8 HOH A2102   O    86.6 134.0 135.8  74.8  84.7 110.0  99.4          
REMARK 620 N                    1     2     3     4     5     6     7           
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A1002  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A   7   OD2                                                    
REMARK 620 2 GLU A 106   OE1  98.6                                              
REMARK 620 3 DGT A 600   O2A  96.4  94.0                                        
REMARK 620 4 HOH A2086   O    75.9  54.9  48.9                                  
REMARK 620 5 HOH A2102   O    51.7 136.5  64.1  84.6                            
REMARK 620 6  DC C 514   OP1 157.4  69.2 103.2 109.0 148.9                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A1003  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ALA A 181   O                                                      
REMARK 620 2 ILE A 186   O    80.8                                              
REMARK 620 3 HOH A2001   O    92.5 160.1                                        
REMARK 620 4 HOH A2003   O    80.0  57.6 139.9                                  
REMARK 620 5 HOH C2002   O    78.5  76.2  84.1 131.4                            
REMARK 620 6 HOH C2004   O   165.0  98.3  83.4 112.3  86.7                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 600                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3T5H   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3T5J   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3T5K   RELATED DB: PDB                                   
DBREF  3T5L A    1   341  UNP    Q97W02   DPO4_SULSO       1    341             
DBREF  3T5L B  402   418  PDB    3T5L     3T5L           402    418             
DBREF  3T5L C  501   514  PDB    3T5L     3T5L           501    514             
SEQRES   1 A  341  MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA          
SEQRES   2 A  341  GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS          
SEQRES   3 A  341  PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP          
SEQRES   4 A  341  SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS          
SEQRES   5 A  341  PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS          
SEQRES   6 A  341  LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS          
SEQRES   7 A  341  GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU          
SEQRES   8 A  341  LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE          
SEQRES   9 A  341  ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP          
SEQRES  10 A  341  TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN          
SEQRES  11 A  341  LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY          
SEQRES  12 A  341  ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP          
SEQRES  13 A  341  MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU          
SEQRES  14 A  341  GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP          
SEQRES  15 A  341  VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS          
SEQRES  16 A  341  LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE          
SEQRES  17 A  341  GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS          
SEQRES  18 A  341  ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN          
SEQRES  19 A  341  GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG          
SEQRES  20 A  341  ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU          
SEQRES  21 A  341  ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR          
SEQRES  22 A  341  TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL          
SEQRES  23 A  341  VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY          
SEQRES  24 A  341  ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR          
SEQRES  25 A  341  SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU          
SEQRES  26 A  341  ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER          
SEQRES  27 A  341  LYS PHE ILE                                                  
SEQRES   1 B   17   DC  DA  DC HN0  DG  DA  DA  DT  DC  DC  DT  DT  DC          
SEQRES   2 B   17   DC  DC  DC  DC                                              
SEQRES   1 C   14   DG  DG  DG  DG  DG  DA  DA  DG  DG  DA  DT  DT  DC          
SEQRES   2 C   14   DC                                                          
MODRES 3T5L HN0 B  405   DG                                                     
HET    HN0  B 405      33                                                       
HET    DGT  A 600      31                                                       
HET     CA  A1001       1                                                       
HET     CA  A1002       1                                                       
HET     CA  A1003       1                                                       
HETNAM     HN0 2'-DEOXY-N-[(2S,3S,5R)-5-HYDROXY-2-                              
HETNAM   2 HN0  PENTYLTETRAHYDROFURAN-3-YL]GUANOSINE 5'-(DIHYDROGEN             
HETNAM   3 HN0  PHOSPHATE)                                                      
HETNAM     DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE                                
HETNAM      CA CALCIUM ION                                                      
FORMUL   2  HN0    C19 H30 N5 O9 P                                              
FORMUL   4  DGT    C10 H16 N5 O13 P3                                            
FORMUL   5   CA    3(CA 2+)                                                     
FORMUL   8  HOH   *110(H2 O)                                                    
HELIX    1   1 TYR A   10  LEU A   19  1                                  10    
HELIX    2   2 ASN A   20  LYS A   24  5                                   5    
HELIX    3   3 ASN A   47  LYS A   52  1                                   6    
HELIX    4   4 PRO A   60  LEU A   68  1                                   9    
HELIX    5   5 ARG A   77  GLU A   94  1                                  18    
HELIX    6   6 ASP A  117  LYS A  137  1                                  21    
HELIX    7   7 ASN A  147  LYS A  159  1                                  13    
HELIX    8   8 ASP A  167  LEU A  178  1                                  12    
HELIX    9   9 ASP A  179  VAL A  183  5                                   5    
HELIX   10  10 GLY A  187  LEU A  197  1                                  11    
HELIX   11  11 LYS A  201  SER A  207  5                                   7    
HELIX   12  12 GLU A  209  GLY A  218  1                                  10    
HELIX   13  13 GLY A  218  ARG A  230  1                                  13    
HELIX   14  14 ASN A  257  ASP A  277  1                                  21    
HELIX   15  15 SER A  307  ASP A  326  1                                  20    
SHEET    1   A 5 ILE A  99  ILE A 101  0                                        
SHEET    2   A 5 GLU A 106  ASP A 110 -1  O  TYR A 108   N  GLU A 100           
SHEET    3   A 5 VAL A   3  PHE A   8 -1  N  LEU A   4   O  LEU A 109           
SHEET    4   A 5 VAL A 140  SER A 145 -1  O  GLY A 143   N  PHE A   5           
SHEET    5   A 5 ILE A 163  VAL A 165  1  O  LYS A 164   N  ILE A 144           
SHEET    1   B 3 GLY A  41  ALA A  46  0                                        
SHEET    2   B 3 VAL A  28  PHE A  33 -1  N  VAL A  32   O  ALA A  42           
SHEET    3   B 3 VAL A  72  PRO A  75  1  O  LEU A  74   N  CYS A  31           
SHEET    1   C 4 SER A 244  SER A 255  0                                        
SHEET    2   C 4 ILE A 330  PHE A 340 -1  O  PHE A 337   N  ILE A 245           
SHEET    3   C 4 PRO A 281  THR A 290 -1  N  VAL A 289   O  ARG A 331           
SHEET    4   C 4 ILE A 295  THR A 301 -1  O  VAL A 296   N  ALA A 288           
LINK         O3'  DC B 404                 P   HN0 B 405     1555   1555  1.60  
LINK         OD1 ASP A   7                CA    CA A1001     1555   1555  2.77  
LINK         OD2 ASP A   7                CA    CA A1002     1555   1555  2.99  
LINK         O   PHE A   8                CA    CA A1001     1555   1555  2.51  
LINK         OD2 ASP A 105                CA    CA A1001     1555   1555  2.57  
LINK         OE1 GLU A 106                CA    CA A1002     1555   1555  2.61  
LINK         O   ALA A 181                CA    CA A1003     1555   1555  2.54  
LINK         O   ILE A 186                CA    CA A1003     1555   1555  2.77  
LINK         O3A DGT A 600                CA    CA A1001     1555   1555  2.63  
LINK         O2G DGT A 600                CA    CA A1001     1555   1555  3.02  
LINK         O2B DGT A 600                CA    CA A1001     1555   1555  3.04  
LINK         O5' DGT A 600                CA    CA A1001     1555   1555  3.20  
LINK         O2A DGT A 600                CA    CA A1002     1555   1555  3.07  
LINK        CA    CA A1001                 O   HOH A2102     1555   1555  2.72  
LINK        CA    CA A1002                 O   HOH A2086     1555   1555  2.77  
LINK        CA    CA A1002                 O   HOH A2102     1555   1555  2.93  
LINK        CA    CA A1002                 OP1  DC C 514     1555   1555  2.97  
LINK        CA    CA A1003                 O   HOH A2001     1555   1555  2.62  
LINK        CA    CA A1003                 O   HOH A2003     1555   1555  2.74  
LINK        CA    CA A1003                 O   HOH C2002     1555   1555  2.82  
LINK        CA    CA A1003                 O   HOH C2004     1555   1555  2.76  
CISPEP   1 LYS A  159    PRO A  160          0         0.27                     
SITE     1 AC1 23 PHE A   8  ASP A   9  TYR A  10  PHE A  11                    
SITE     2 AC1 23 TYR A  12  ALA A  44  THR A  45  TYR A  48                    
SITE     3 AC1 23 ARG A  51  ASP A 105  LYS A 159   CA A1001                    
SITE     4 AC1 23  CA A1002  HOH A2005  HOH A2006  HOH A2011                    
SITE     5 AC1 23 HOH A2086  HOH A2096  HOH A2097  HOH A2102                    
SITE     6 AC1 23  DC B 404  HN0 B 405   DC C 514                               
SITE     1 AC2  5 ASP A   7  PHE A   8  ASP A 105  DGT A 600                    
SITE     2 AC2  5 HOH A2102                                                     
SITE     1 AC3  7 ASP A   7  GLU A 106  LYS A 152  DGT A 600                    
SITE     2 AC3  7 HOH A2086  HOH A2102   DC C 514                               
SITE     1 AC4  6 ALA A 181  ILE A 186  HOH A2001  HOH A2003                    
SITE     2 AC4  6 HOH C2002  HOH C2004                                          
CRYST1   95.124  103.716   52.816  90.00  90.00  90.00 P 21 21 2     4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010513  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.009642  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.018934        0.00000