PDB Short entry for 3T8F HEADER HYDROLASE/HYDROLASE INHIBITOR 01-AUG-11 3T8F TITLE THERMOLYSIN IN COMPLEX WITH UBTLN34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATURE FORM (UNP RESIDUES 233-548); COMPND 5 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 6 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS PROTEASE, METALLOPROTEASE, HYDROLYSIS OF PEPTIDE BONDS, KEYWDS 2 PHOSPHORAMIDON, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.BIELA,A.HEINE,G.KLEBE REVDAT 3 13-SEP-23 3T8F 1 REMARK REVDAT 2 12-FEB-14 3T8F 1 JRNL REVDAT 1 01-AUG-12 3T8F 0 JRNL AUTH A.BIELA,M.BETZ,A.HEINE,G.KLEBE JRNL TITL WATER MAKES THE DIFFERENCE: REARRANGEMENT OF WATER SOLVATION JRNL TITL 2 LAYER TRIGGERS NON-ADDITIVITY OF FUNCTIONAL GROUP JRNL TITL 3 CONTRIBUTIONS IN PROTEIN-LIGAND BINDING. JRNL REF CHEMMEDCHEM V. 7 1423 2012 JRNL REFN ISSN 1860-7179 JRNL PMID 22733601 JRNL DOI 10.1002/CMDC.201200206 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 58574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3561 - 3.9700 0.98 2942 157 0.1517 0.1755 REMARK 3 2 3.9700 - 3.1522 1.00 2793 178 0.1351 0.1300 REMARK 3 3 3.1522 - 2.7540 1.00 2775 142 0.1406 0.1406 REMARK 3 4 2.7540 - 2.5024 0.99 2723 158 0.1404 0.1573 REMARK 3 5 2.5024 - 2.3231 0.99 2714 152 0.1424 0.1494 REMARK 3 6 2.3231 - 2.1862 0.99 2726 131 0.1338 0.1519 REMARK 3 7 2.1862 - 2.0767 0.99 2720 136 0.1378 0.1706 REMARK 3 8 2.0767 - 1.9863 0.99 2697 140 0.1425 0.1777 REMARK 3 9 1.9863 - 1.9099 0.99 2678 138 0.1368 0.1561 REMARK 3 10 1.9099 - 1.8440 0.97 2621 148 0.1354 0.1478 REMARK 3 11 1.8440 - 1.7863 0.97 2633 128 0.1335 0.1952 REMARK 3 12 1.7863 - 1.7353 0.97 2613 149 0.1366 0.1795 REMARK 3 13 1.7353 - 1.6896 0.97 2606 144 0.1338 0.1393 REMARK 3 14 1.6896 - 1.6484 0.97 2609 134 0.1364 0.1657 REMARK 3 15 1.6484 - 1.6109 0.97 2639 114 0.1420 0.1594 REMARK 3 16 1.6109 - 1.5766 0.96 2565 126 0.1476 0.1923 REMARK 3 17 1.5766 - 1.5451 0.95 2529 148 0.1418 0.1496 REMARK 3 18 1.5451 - 1.5159 0.95 2551 136 0.1560 0.1477 REMARK 3 19 1.5159 - 1.4888 0.94 2508 138 0.1615 0.2098 REMARK 3 20 1.4888 - 1.4636 0.93 2493 123 0.1792 0.2184 REMARK 3 21 1.4636 - 1.4400 0.93 2488 131 0.1672 0.1758 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 53.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.29060 REMARK 3 B22 (A**2) : -1.29060 REMARK 3 B33 (A**2) : 2.58110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2657 REMARK 3 ANGLE : 1.048 3672 REMARK 3 CHIRALITY : 0.074 384 REMARK 3 PLANARITY : 0.005 468 REMARK 3 DIHEDRAL : 15.128 936 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:19) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3638 28.5260 12.6584 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.1164 REMARK 3 T33: 0.0643 T12: 0.0086 REMARK 3 T13: 0.0156 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.1332 L22: 0.0767 REMARK 3 L33: 0.0869 L12: -0.0634 REMARK 3 L13: -0.0378 L23: 0.0528 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.0039 S13: 0.0065 REMARK 3 S21: 0.0669 S22: -0.0013 S23: -0.0148 REMARK 3 S31: 0.0057 S32: -0.0802 S33: 0.0025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 20:60) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1225 32.8046 4.1607 REMARK 3 T TENSOR REMARK 3 T11: 0.0634 T22: 0.0738 REMARK 3 T33: 0.0591 T12: 0.0019 REMARK 3 T13: -0.0023 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.1082 L22: 0.1260 REMARK 3 L33: 0.0644 L12: 0.0074 REMARK 3 L13: 0.0321 L23: -0.0808 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0445 S13: -0.0082 REMARK 3 S21: 0.0261 S22: -0.0313 S23: -0.0477 REMARK 3 S31: -0.0227 S32: 0.0292 S33: 0.0051 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 61:100) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8009 26.1690 1.5896 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.0625 REMARK 3 T33: 0.0515 T12: 0.0075 REMARK 3 T13: 0.0044 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.2071 L22: 0.1093 REMARK 3 L33: 0.1028 L12: 0.0334 REMARK 3 L13: 0.0151 L23: -0.1004 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: -0.0233 S13: -0.0438 REMARK 3 S21: 0.0470 S22: 0.0048 S23: -0.0078 REMARK 3 S31: -0.0208 S32: 0.0080 S33: -0.0112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 101:173) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8610 36.2121 -4.8248 REMARK 3 T TENSOR REMARK 3 T11: 0.0612 T22: 0.0689 REMARK 3 T33: 0.0579 T12: 0.0074 REMARK 3 T13: 0.0089 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.1291 L22: 0.0462 REMARK 3 L33: 0.0338 L12: 0.0529 REMARK 3 L13: 0.0511 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.0016 S13: 0.0315 REMARK 3 S21: -0.0131 S22: -0.0163 S23: 0.0219 REMARK 3 S31: -0.0109 S32: 0.0022 S33: 0.0062 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 174:202) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0755 31.7738 6.5066 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.1010 REMARK 3 T33: 0.0806 T12: -0.0114 REMARK 3 T13: 0.0250 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.0496 L22: 0.1936 REMARK 3 L33: 0.2772 L12: 0.0150 REMARK 3 L13: -0.0335 L23: 0.1767 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: -0.1077 S13: 0.0410 REMARK 3 S21: 0.0693 S22: -0.0904 S23: 0.0454 REMARK 3 S31: 0.0415 S32: -0.0388 S33: 0.0281 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 203:256) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8031 34.3983 -7.3327 REMARK 3 T TENSOR REMARK 3 T11: 0.0532 T22: 0.0881 REMARK 3 T33: 0.1130 T12: 0.0050 REMARK 3 T13: 0.0033 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.1314 L22: 0.2405 REMARK 3 L33: 0.0625 L12: 0.1420 REMARK 3 L13: 0.0761 L23: 0.0420 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.0863 S13: 0.0756 REMARK 3 S21: -0.0106 S22: -0.0559 S23: 0.1381 REMARK 3 S31: -0.0159 S32: -0.0404 S33: 0.0280 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 257:274) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5339 18.1807 -10.0917 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.0779 REMARK 3 T33: 0.0887 T12: -0.0051 REMARK 3 T13: -0.0005 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.2210 L22: 0.2099 REMARK 3 L33: 0.1370 L12: 0.0132 REMARK 3 L13: 0.0461 L23: -0.0358 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: -0.0266 S13: -0.0650 REMARK 3 S21: -0.0328 S22: -0.0094 S23: 0.0435 REMARK 3 S31: 0.0202 S32: 0.0322 S33: -0.0205 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 275:316) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4210 20.7895 -15.6894 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.0948 REMARK 3 T33: 0.1160 T12: -0.0072 REMARK 3 T13: -0.0133 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.1113 L22: 0.3170 REMARK 3 L33: 0.1253 L12: 0.0410 REMARK 3 L13: 0.0529 L23: 0.0076 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: 0.0610 S13: -0.0494 REMARK 3 S21: -0.0807 S22: -0.0136 S23: 0.1192 REMARK 3 S31: 0.0497 S32: -0.0489 S33: -0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 8TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS, 1.9 M CESIUM CHLORIDE, 50% REMARK 280 DMSO, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.73333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.46667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.60000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.33333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.86667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.73333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.46667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.33333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.60000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.86667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 634 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 706 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -59.30 69.65 REMARK 500 SER A 92 -173.79 61.31 REMARK 500 SER A 107 -161.89 59.97 REMARK 500 ASN A 111 53.84 -91.35 REMARK 500 THR A 152 -99.52 -120.54 REMARK 500 ASN A 159 -142.10 52.96 REMARK 500 THR A 194 77.25 42.02 REMARK 500 ILE A 232 -60.92 -107.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-[(R)-({[(BENZYLOXY)CARBONYL]AMINO}METHYL)(HYDROXY) REMARK 630 PHOSPHORYL]-N-ETHYL-L-LEUCINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 UBU A 401 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ PGL LNE REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UBU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T73 RELATED DB: PDB REMARK 900 RELATED ID: 3T74 RELATED DB: PDB REMARK 900 RELATED ID: 3T87 RELATED DB: PDB REMARK 900 RELATED ID: 3T8C RELATED DB: PDB REMARK 900 RELATED ID: 3T8D RELATED DB: PDB REMARK 900 RELATED ID: 3FVP RELATED DB: PDB REMARK 900 RELATED ID: 3T8G RELATED DB: PDB REMARK 900 RELATED ID: 3T8H RELATED DB: PDB DBREF 3T8F A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET UBU A 401 30 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET DMS A 406 4 HET DMS A 407 4 HET DMS A 408 4 HET DMS A 409 4 HET DMS A 410 4 HET ZN A 411 1 HET CA A 412 1 HET CA A 413 1 HET CA A 414 1 HET CA A 415 1 HETNAM UBU N-[(R)-({[(BENZYLOXY)CARBONYL]AMINO}METHYL)(HYDROXY) HETNAM 2 UBU PHOSPHORYL]-N-ETHYL-L-LEUCINAMIDE HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 UBU C17 H28 N3 O5 P FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 DMS 5(C2 H6 O S) FORMUL 12 ZN ZN 2+ FORMUL 13 CA 4(CA 2+) FORMUL 17 HOH *477(H2 O) HELIX 1 1 ALA A 64 TYR A 66 5 3 HELIX 2 2 ASP A 67 ASN A 89 1 23 HELIX 3 3 PRO A 132 GLY A 135 5 4 HELIX 4 4 GLY A 136 THR A 152 1 17 HELIX 5 5 GLN A 158 ASN A 181 1 24 HELIX 6 6 ASP A 207 GLY A 212 5 6 HELIX 7 7 HIS A 216 ARG A 220 5 5 HELIX 8 8 THR A 224 VAL A 230 1 7 HELIX 9 9 ASN A 233 GLY A 247 1 15 HELIX 10 10 GLY A 259 TYR A 274 1 16 HELIX 11 11 ASN A 280 GLY A 297 1 18 HELIX 12 12 SER A 300 VAL A 313 1 14 SHEET 1 A 5 ALA A 56 ASP A 57 0 SHEET 2 A 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 A 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 A 5 THR A 4 ARG A 11 -1 N THR A 4 O TYR A 24 SHEET 5 A 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 B 3 GLN A 31 ASP A 32 0 SHEET 2 B 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 B 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 C 5 GLN A 31 ASP A 32 0 SHEET 2 C 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 C 5 ILE A 100 TYR A 106 1 O ILE A 100 N PHE A 40 SHEET 4 C 5 MET A 120 GLY A 123 1 O MET A 120 N ARG A 101 SHEET 5 C 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 D 2 GLU A 187 ILE A 188 0 SHEET 2 D 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 E 2 GLY A 248 HIS A 250 0 SHEET 2 E 2 VAL A 253 VAL A 255 -1 O VAL A 255 N GLY A 248 CISPEP 1 LEU A 50 PRO A 51 0 4.10 SITE 1 AC1 18 TYR A 106 ASN A 112 ALA A 113 PHE A 114 SITE 2 AC1 18 TRP A 115 HIS A 142 GLU A 143 HIS A 146 SITE 3 AC1 18 TYR A 157 GLU A 166 LEU A 202 ARG A 203 SITE 4 AC1 18 HIS A 231 GOL A 405 DMS A 406 ZN A 411 SITE 5 AC1 18 HOH A 718 HOH A 908 SITE 1 AC2 9 SER A 65 TYR A 66 PRO A 69 HIS A 105 SITE 2 AC2 9 HOH A 501 HOH A 506 HOH A 637 HOH A 877 SITE 3 AC2 9 HOH A 910 SITE 1 AC3 11 THR A 152 GLY A 247 GLY A 248 VAL A 255 SITE 2 AC3 11 GLN A 273 LEU A 275 HOH A 517 HOH A 699 SITE 3 AC3 11 HOH A 746 HOH A 752 HOH A 769 SITE 1 AC4 6 GLY A 109 TYR A 110 ASN A 111 ASN A 112 SITE 2 AC4 6 HOH A 876 HOH A 896 SITE 1 AC5 8 PHE A 114 TRP A 115 HIS A 146 TYR A 157 SITE 2 AC5 8 UBU A 401 HOH A 579 HOH A 658 HOH A 696 SITE 1 AC6 5 TYR A 110 ASN A 112 PHE A 114 UBU A 401 SITE 2 AC6 5 HOH A 613 SITE 1 AC7 6 TYR A 66 HIS A 216 SER A 218 TYR A 251 SITE 2 AC7 6 HOH A 723 HOH A 929 SITE 1 AC8 5 ILE A 1 THR A 2 GLY A 3 GLN A 31 SITE 2 AC8 5 ASN A 33 SITE 1 AC9 4 TYR A 24 SER A 25 HOH A 562 HOH A 866 SITE 1 BC1 5 PRO A 184 TRP A 186 HOH A 530 HOH A 576 SITE 2 BC1 5 HOH A 726 SITE 1 BC2 4 HIS A 142 HIS A 146 GLU A 166 UBU A 401 SITE 1 BC3 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 BC3 6 HOH A 684 HOH A 705 SITE 1 BC4 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 BC4 6 GLU A 190 HOH A 522 SITE 1 BC5 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 BC5 6 HOH A 682 HOH A 725 SITE 1 BC6 6 ASP A 57 ASP A 59 GLN A 61 HOH A 636 SITE 2 BC6 6 HOH A 663 HOH A 683 CRYST1 92.400 92.400 131.200 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010823 0.006248 0.000000 0.00000 SCALE2 0.000000 0.012497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007622 0.00000