PDB Short entry for 3TDM HEADER DE NOVO PROTEIN 11-AUG-11 3TDM TITLE COMPUTATIONALLY DESIGNED TIM-BARREL PROTEIN, HALFFLR COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPUTATIONALLY DESIGNED TWO-FOLD SYMMETRIC TIM-BARREL COMPND 3 PROTEIN, FLR (HALF MOLECULE); COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: ARTIFICIAL GENE; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM-BARREL, SYMMETRIC SUPERFOLD, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.HARP,C.FORTENBERRY,E.BOWMAN,W.PROFITT,B.DORR,L.MIZOUE REVDAT 4 03-APR-24 3TDM 1 REMARK REVDAT 3 28-FEB-24 3TDM 1 REMARK REVDAT 2 23-NOV-11 3TDM 1 JRNL REVDAT 1 16-NOV-11 3TDM 0 JRNL AUTH C.FORTENBERRY,E.A.BOWMAN,W.PROFFITT,B.DORR,S.COMBS,J.HARP, JRNL AUTH 2 L.MIZOUE,J.MEILER JRNL TITL EXPLORING SYMMETRY AS AN AVENUE TO THE COMPUTATIONAL DESIGN JRNL TITL 2 OF LARGE PROTEIN DOMAINS. JRNL REF J.AM.CHEM.SOC. V. 133 18026 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21978247 JRNL DOI 10.1021/JA2051217 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1322 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3598 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.09000 REMARK 3 B22 (A**2) : 11.09000 REMARK 3 B33 (A**2) : -22.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.428 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3665 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4949 ; 2.139 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 6.958 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;37.298 ;23.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;18.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.950 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 581 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2673 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2318 ; 4.337 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3734 ; 7.033 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1347 ; 5.155 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1215 ; 8.249 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3665 ; 2.679 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 2 B 115 1 REMARK 3 1 A 2 A 115 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 872 ; 0.340 ; 0.050 REMARK 3 TIGHT THERMAL 1 B (A**2): 872 ;10.430 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : D C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 D 2 D 115 4 REMARK 3 1 C 2 C 115 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 D (A): 840 ; 0.680 ; 0.500 REMARK 3 MEDIUM THERMAL 2 D (A**2): 840 ;19.440 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8880 22.4620 16.5570 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.2177 REMARK 3 T33: 0.1833 T12: -0.0085 REMARK 3 T13: 0.0054 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 6.7859 L22: 9.6861 REMARK 3 L33: 8.4734 L12: 2.8994 REMARK 3 L13: 5.4421 L23: 6.9351 REMARK 3 S TENSOR REMARK 3 S11: -0.2171 S12: -0.2489 S13: 0.1916 REMARK 3 S21: -0.7489 S22: -0.0898 S23: -0.4247 REMARK 3 S31: -0.7535 S32: 0.1856 S33: 0.3070 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): -19.8580 16.1920 8.7100 REMARK 3 T TENSOR REMARK 3 T11: 0.1635 T22: 0.1776 REMARK 3 T33: 0.1712 T12: -0.0106 REMARK 3 T13: -0.0275 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.0151 L22: 2.8555 REMARK 3 L33: 1.6434 L12: 0.7304 REMARK 3 L13: -0.1440 L23: 0.4144 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: 0.1878 S13: -0.1210 REMARK 3 S21: -0.3896 S22: 0.0522 S23: 0.1324 REMARK 3 S31: 0.0609 S32: -0.1695 S33: -0.0374 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4540 15.3720 5.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.1582 REMARK 3 T33: 0.2129 T12: -0.0262 REMARK 3 T13: 0.0478 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.3109 L22: 3.7878 REMARK 3 L33: 1.4467 L12: -0.0472 REMARK 3 L13: -0.1503 L23: 0.9381 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: 0.1321 S13: -0.3168 REMARK 3 S21: -0.3313 S22: 0.0731 S23: -0.2321 REMARK 3 S31: 0.0237 S32: -0.1370 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1780 12.2650 8.8270 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.1599 REMARK 3 T33: 0.3847 T12: 0.0093 REMARK 3 T13: 0.0817 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 2.1973 L22: 2.6295 REMARK 3 L33: 2.3510 L12: 0.7583 REMARK 3 L13: 0.5012 L23: 0.3729 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.1690 S13: -0.4256 REMARK 3 S21: -0.2011 S22: 0.1878 S23: -0.5978 REMARK 3 S31: 0.1164 S32: 0.2987 S33: -0.1195 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0570 18.6920 9.7160 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.6631 REMARK 3 T33: 1.7466 T12: -0.2548 REMARK 3 T13: 0.5772 T23: -0.6560 REMARK 3 L TENSOR REMARK 3 L11: 46.6171 L22: 1.3245 REMARK 3 L33: 26.5154 L12: -3.5138 REMARK 3 L13: -38.1418 L23: 2.4178 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 2.8811 S13: 0.2323 REMARK 3 S21: -0.5729 S22: 0.2925 S23: -1.3376 REMARK 3 S31: -0.1330 S32: -2.3911 S33: -0.2978 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7330 16.0640 17.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.2002 T22: 0.2399 REMARK 3 T33: 0.8209 T12: -0.0683 REMARK 3 T13: -0.1237 T23: 0.2750 REMARK 3 L TENSOR REMARK 3 L11: 9.3390 L22: 2.4459 REMARK 3 L33: 13.1520 L12: -6.0145 REMARK 3 L13: 4.0080 L23: 0.1225 REMARK 3 S TENSOR REMARK 3 S11: -0.3336 S12: 0.2261 S13: 0.2740 REMARK 3 S21: 0.0795 S22: -0.1023 S23: -0.1635 REMARK 3 S31: -0.7830 S32: 0.3878 S33: 0.4358 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 46 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2530 6.1250 25.5930 REMARK 3 T TENSOR REMARK 3 T11: 0.1987 T22: 0.2256 REMARK 3 T33: 0.5974 T12: -0.0010 REMARK 3 T13: -0.0890 T23: 0.1888 REMARK 3 L TENSOR REMARK 3 L11: 2.4529 L22: 1.6751 REMARK 3 L33: 2.6892 L12: 0.9863 REMARK 3 L13: 0.7106 L23: 0.3646 REMARK 3 S TENSOR REMARK 3 S11: 0.2844 S12: -0.5017 S13: -1.0856 REMARK 3 S21: 0.2256 S22: -0.0522 S23: -0.3001 REMARK 3 S31: 0.3085 S32: -0.0875 S33: -0.2322 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 47 B 80 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9980 14.8580 28.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.2415 REMARK 3 T33: 0.2381 T12: -0.0258 REMARK 3 T13: -0.0264 T23: 0.1083 REMARK 3 L TENSOR REMARK 3 L11: 6.2247 L22: 1.2557 REMARK 3 L33: 1.3204 L12: 1.8580 REMARK 3 L13: -0.7495 L23: -0.4202 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: -0.7168 S13: -0.5635 REMARK 3 S21: 0.0826 S22: -0.1523 S23: -0.1786 REMARK 3 S31: 0.0616 S32: -0.0066 S33: 0.0465 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 81 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6850 21.4930 27.7090 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.3322 REMARK 3 T33: 0.1604 T12: -0.0351 REMARK 3 T13: 0.0142 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.3634 L22: 1.7723 REMARK 3 L33: 1.9847 L12: 0.3702 REMARK 3 L13: 0.3231 L23: 0.1746 REMARK 3 S TENSOR REMARK 3 S11: 0.1829 S12: -0.4908 S13: 0.0150 REMARK 3 S21: 0.2044 S22: -0.0965 S23: 0.0958 REMARK 3 S31: -0.1077 S32: -0.0935 S33: -0.0864 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4020 25.5520 20.7840 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.4653 REMARK 3 T33: 0.4233 T12: -0.0315 REMARK 3 T13: 0.0290 T23: -0.2686 REMARK 3 L TENSOR REMARK 3 L11: 6.0975 L22: 2.7624 REMARK 3 L33: 1.0611 L12: 2.7993 REMARK 3 L13: -1.7474 L23: 0.1682 REMARK 3 S TENSOR REMARK 3 S11: 0.3878 S12: -0.7426 S13: 0.4486 REMARK 3 S21: 0.2799 S22: -0.6875 S23: 0.7243 REMARK 3 S31: -0.0133 S32: -0.1086 S33: 0.2998 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 18 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9100 28.4680 -10.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.1895 REMARK 3 T33: 0.1442 T12: -0.0267 REMARK 3 T13: 0.0396 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 5.6432 L22: 2.0601 REMARK 3 L33: 10.4838 L12: 0.7315 REMARK 3 L13: 3.5606 L23: -2.4623 REMARK 3 S TENSOR REMARK 3 S11: -0.1925 S12: -0.4313 S13: -0.1588 REMARK 3 S21: 0.2129 S22: -0.0051 S23: 0.0688 REMARK 3 S31: -0.2118 S32: -0.2010 S33: 0.1977 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 19 C 51 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7950 31.2460 -12.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.1376 T22: 0.1525 REMARK 3 T33: 0.1698 T12: -0.0351 REMARK 3 T13: 0.0171 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.8015 L22: 1.8123 REMARK 3 L33: 2.0395 L12: 1.1213 REMARK 3 L13: -1.1064 L23: -0.4034 REMARK 3 S TENSOR REMARK 3 S11: -0.0966 S12: -0.1302 S13: -0.0766 REMARK 3 S21: 0.1003 S22: -0.1352 S23: -0.0336 REMARK 3 S31: 0.0080 S32: -0.0204 S33: 0.2318 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 52 C 62 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2460 15.1090 -6.6810 REMARK 3 T TENSOR REMARK 3 T11: 1.2557 T22: 0.5493 REMARK 3 T33: 1.5695 T12: 0.5773 REMARK 3 T13: 0.9059 T23: 0.1178 REMARK 3 L TENSOR REMARK 3 L11: -0.5560 L22: 0.7199 REMARK 3 L33: 18.0837 L12: 0.6485 REMARK 3 L13: 4.8280 L23: 5.1524 REMARK 3 S TENSOR REMARK 3 S11: 0.7244 S12: 0.7384 S13: -0.3584 REMARK 3 S21: 0.8138 S22: 0.7268 S23: -0.2001 REMARK 3 S31: 2.6184 S32: 2.6828 S33: -1.4511 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 63 C 99 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7220 23.0210 -4.7810 REMARK 3 T TENSOR REMARK 3 T11: 0.2958 T22: 0.2486 REMARK 3 T33: 0.3755 T12: -0.0675 REMARK 3 T13: 0.2092 T23: -0.0959 REMARK 3 L TENSOR REMARK 3 L11: 4.9962 L22: 2.8758 REMARK 3 L33: 3.6030 L12: 3.7870 REMARK 3 L13: -2.9075 L23: -2.7155 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: -0.3236 S13: -0.0874 REMARK 3 S21: 0.0241 S22: -0.2283 S23: -0.0725 REMARK 3 S31: 0.0867 S32: 0.0398 S33: 0.1793 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 100 C 111 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5860 8.9080 -13.8550 REMARK 3 T TENSOR REMARK 3 T11: 0.3992 T22: 0.2628 REMARK 3 T33: 0.4816 T12: -0.0741 REMARK 3 T13: -0.0974 T23: 0.1336 REMARK 3 L TENSOR REMARK 3 L11: 16.0752 L22: 4.3026 REMARK 3 L33: 8.4797 L12: -0.9553 REMARK 3 L13: -10.0634 L23: 4.2459 REMARK 3 S TENSOR REMARK 3 S11: -0.7472 S12: -0.3263 S13: -0.0920 REMARK 3 S21: -0.0175 S22: 0.4249 S23: 0.4439 REMARK 3 S31: 0.4778 S32: 0.5813 S33: 0.3223 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 11 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6060 49.6910 14.9630 REMARK 3 T TENSOR REMARK 3 T11: 0.5633 T22: 0.2384 REMARK 3 T33: 0.5270 T12: 0.2352 REMARK 3 T13: 0.1239 T23: -0.0577 REMARK 3 L TENSOR REMARK 3 L11: 6.2721 L22: -1.7931 REMARK 3 L33: 36.6072 L12: -0.1143 REMARK 3 L13: -17.0405 L23: -2.4078 REMARK 3 S TENSOR REMARK 3 S11: -0.4209 S12: 0.2046 S13: 0.0842 REMARK 3 S21: 0.0178 S22: 0.1889 S23: 0.0498 REMARK 3 S31: 1.4561 S32: -0.4831 S33: 0.2320 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 12 D 34 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4640 42.3580 7.2480 REMARK 3 T TENSOR REMARK 3 T11: 0.4862 T22: 1.0055 REMARK 3 T33: 0.2646 T12: -0.4366 REMARK 3 T13: 0.0010 T23: -0.2797 REMARK 3 L TENSOR REMARK 3 L11: 5.8151 L22: 11.0102 REMARK 3 L33: 4.0017 L12: -0.3547 REMARK 3 L13: -2.3544 L23: 6.1414 REMARK 3 S TENSOR REMARK 3 S11: -0.2411 S12: 1.8288 S13: -0.3414 REMARK 3 S21: 0.0858 S22: -0.2972 S23: 0.7214 REMARK 3 S31: 0.2449 S32: -0.9243 S33: 0.5383 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 35 D 68 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3110 46.8190 7.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.2580 REMARK 3 T33: 0.2187 T12: 0.0967 REMARK 3 T13: 0.0217 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 6.0790 L22: 1.9736 REMARK 3 L33: 6.1808 L12: -1.0909 REMARK 3 L13: -4.2567 L23: 0.4534 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: 0.6716 S13: -0.1696 REMARK 3 S21: 0.1192 S22: -0.1205 S23: 0.1479 REMARK 3 S31: 0.3349 S32: -0.3502 S33: 0.0793 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 69 D 100 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8820 47.9050 4.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.1961 REMARK 3 T33: 0.1670 T12: 0.0636 REMARK 3 T13: 0.0009 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 5.4212 L22: 5.2794 REMARK 3 L33: 6.9700 L12: -2.3472 REMARK 3 L13: -3.7429 L23: -1.2704 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: 0.0673 S13: 0.1370 REMARK 3 S21: 0.0168 S22: -0.0962 S23: -0.0892 REMARK 3 S31: 0.3274 S32: 0.2141 S33: 0.0810 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 101 D 120 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6490 40.0010 11.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.1565 REMARK 3 T33: 0.2133 T12: 0.0214 REMARK 3 T13: 0.0421 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 8.0762 L22: 5.7120 REMARK 3 L33: 4.0325 L12: 0.7124 REMARK 3 L13: -0.8052 L23: 3.9862 REMARK 3 S TENSOR REMARK 3 S11: 0.1504 S12: 0.6418 S13: 0.4771 REMARK 3 S21: -0.6369 S22: 0.1448 S23: -0.4022 REMARK 3 S31: -0.6962 S32: 0.0093 S33: -0.2952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 36.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: COMPUTATIONAL MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 1000, 0.1M SODIUM CITRATE, REMARK 280 0.1M AMMONIUM CHLORIDE, PH 4.2, MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.10000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.15000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 60.49300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -35.05000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLU A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLU B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 GLY B 121 REMARK 465 GLY C -4 REMARK 465 SER C -3 REMARK 465 GLU C -2 REMARK 465 SER C -1 REMARK 465 SER C 0 REMARK 465 LEU C 112 REMARK 465 ILE C 113 REMARK 465 THR C 114 REMARK 465 GLN C 115 REMARK 465 ILE C 116 REMARK 465 ALA C 117 REMARK 465 GLN C 118 REMARK 465 THR C 119 REMARK 465 PHE C 120 REMARK 465 GLY C 121 REMARK 465 GLY D -4 REMARK 465 SER D -3 REMARK 465 GLU D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 GLY D 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN C 109 N SER C 111 1.74 REMARK 500 CE1 PHE D 89 CD1 ILE D 116 1.90 REMARK 500 ND2 ASN C 109 CB SER C 111 1.90 REMARK 500 O THR B 57 O HOH B 142 1.93 REMARK 500 CE MET B 18 O GLY B 29 1.99 REMARK 500 NZ LYS A 99 O HOH A 149 2.12 REMARK 500 O LYS C 85 CD1 PHE C 89 2.13 REMARK 500 OD2 ASP A 53 O HOH A 133 2.14 REMARK 500 CE1 PHE B 20 CB ASN B 27 2.14 REMARK 500 O ALA D 117 N PHE D 120 2.17 REMARK 500 N VAL D 13 O GLU D 16 2.18 REMARK 500 O SER C 80 O HOH C 129 2.19 REMARK 500 C ASN C 109 N SER C 111 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 87 NZ LYS D 85 4465 1.34 REMARK 500 NH2 ARG B 95 O THR D 119 4465 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY C 84 C LYS C 85 N 0.178 REMARK 500 LYS D 26 C ASN D 27 N 0.234 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 1 CA - C - N ANGL. DEV. = 23.0 DEGREES REMARK 500 SER B 1 O - C - N ANGL. DEV. = -23.9 DEGREES REMARK 500 GLN B 2 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 VAL B 19 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 GLY C 84 O - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 LYS C 85 C - N - CA ANGL. DEV. = 20.9 DEGREES REMARK 500 LYS D 26 O - C - N ANGL. DEV. = -14.1 DEGREES REMARK 500 ASN D 27 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 GLY D 56 C - N - CA ANGL. DEV. = -16.0 DEGREES REMARK 500 SER D 101 CA - C - N ANGL. DEV. = 15.3 DEGREES REMARK 500 SER D 101 O - C - N ANGL. DEV. = -16.5 DEGREES REMARK 500 ILE D 102 C - N - CA ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 103 -74.36 -128.32 REMARK 500 GLU A 108 -76.53 -75.60 REMARK 500 VAL B 13 126.03 -176.26 REMARK 500 ASP B 14 -6.25 70.83 REMARK 500 TYR B 22 89.71 49.16 REMARK 500 SER B 23 53.45 24.40 REMARK 500 LYS B 25 -61.89 -92.24 REMARK 500 ARG B 33 -7.13 -59.46 REMARK 500 ASN B 103 -80.25 -136.42 REMARK 500 ASP C 55 141.33 -33.21 REMARK 500 SER C 59 22.40 -150.61 REMARK 500 TYR C 61 156.95 -21.42 REMARK 500 LYS C 85 166.56 131.03 REMARK 500 ASN C 103 -67.03 -142.23 REMARK 500 VAL C 107 69.58 77.73 REMARK 500 GLU C 108 51.53 100.05 REMARK 500 PRO C 110 -2.61 -32.33 REMARK 500 TYR D 22 82.92 63.51 REMARK 500 SER D 23 66.28 26.79 REMARK 500 ILE D 52 -89.66 -54.03 REMARK 500 ASP D 53 -39.30 -2.65 REMARK 500 ARG D 54 76.64 -106.82 REMARK 500 LYS D 58 44.05 -143.08 REMARK 500 TYR D 61 -155.30 -59.36 REMARK 500 ASN D 103 -76.60 -138.37 REMARK 500 ASN D 109 80.76 -151.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 1 -12.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TDN RELATED DB: PDB DBREF 3TDM A -4 121 PDB 3TDM 3TDM -4 121 DBREF 3TDM B -4 121 PDB 3TDM 3TDM -4 121 DBREF 3TDM C -4 121 PDB 3TDM 3TDM -4 121 DBREF 3TDM D -4 121 PDB 3TDM 3TDM -4 121 SEQRES 1 A 126 GLY SER GLU SER SER SER GLN ALA VAL VAL VAL ALA ILE SEQRES 2 A 126 ASP ALA LYS ARG VAL ASP GLY GLU PHE MET VAL PHE THR SEQRES 3 A 126 TYR SER GLY LYS LYS ASN THR GLY ILE LEU LEU ARG ASP SEQRES 4 A 126 TRP VAL VAL GLU VAL GLU LYS ARG GLY ALA GLY GLU ILE SEQRES 5 A 126 LEU LEU THR SER ILE ASP ARG ASP GLY THR LYS SER GLY SEQRES 6 A 126 TYR ASP THR GLU MET ILE ARG PHE VAL ARG PRO LEU THR SEQRES 7 A 126 THR LEU PRO ILE ILE ALA SER GLY GLY ALA GLY LYS MET SEQRES 8 A 126 GLU HIS PHE LEU GLU ALA PHE LEU ARG GLY ALA ASP LYS SEQRES 9 A 126 VAL SER ILE ASN THR ALA ALA VAL GLU ASN PRO SER LEU SEQRES 10 A 126 ILE THR GLN ILE ALA GLN THR PHE GLY SEQRES 1 B 126 GLY SER GLU SER SER SER GLN ALA VAL VAL VAL ALA ILE SEQRES 2 B 126 ASP ALA LYS ARG VAL ASP GLY GLU PHE MET VAL PHE THR SEQRES 3 B 126 TYR SER GLY LYS LYS ASN THR GLY ILE LEU LEU ARG ASP SEQRES 4 B 126 TRP VAL VAL GLU VAL GLU LYS ARG GLY ALA GLY GLU ILE SEQRES 5 B 126 LEU LEU THR SER ILE ASP ARG ASP GLY THR LYS SER GLY SEQRES 6 B 126 TYR ASP THR GLU MET ILE ARG PHE VAL ARG PRO LEU THR SEQRES 7 B 126 THR LEU PRO ILE ILE ALA SER GLY GLY ALA GLY LYS MET SEQRES 8 B 126 GLU HIS PHE LEU GLU ALA PHE LEU ARG GLY ALA ASP LYS SEQRES 9 B 126 VAL SER ILE ASN THR ALA ALA VAL GLU ASN PRO SER LEU SEQRES 10 B 126 ILE THR GLN ILE ALA GLN THR PHE GLY SEQRES 1 C 126 GLY SER GLU SER SER SER GLN ALA VAL VAL VAL ALA ILE SEQRES 2 C 126 ASP ALA LYS ARG VAL ASP GLY GLU PHE MET VAL PHE THR SEQRES 3 C 126 TYR SER GLY LYS LYS ASN THR GLY ILE LEU LEU ARG ASP SEQRES 4 C 126 TRP VAL VAL GLU VAL GLU LYS ARG GLY ALA GLY GLU ILE SEQRES 5 C 126 LEU LEU THR SER ILE ASP ARG ASP GLY THR LYS SER GLY SEQRES 6 C 126 TYR ASP THR GLU MET ILE ARG PHE VAL ARG PRO LEU THR SEQRES 7 C 126 THR LEU PRO ILE ILE ALA SER GLY GLY ALA GLY LYS MET SEQRES 8 C 126 GLU HIS PHE LEU GLU ALA PHE LEU ARG GLY ALA ASP LYS SEQRES 9 C 126 VAL SER ILE ASN THR ALA ALA VAL GLU ASN PRO SER LEU SEQRES 10 C 126 ILE THR GLN ILE ALA GLN THR PHE GLY SEQRES 1 D 126 GLY SER GLU SER SER SER GLN ALA VAL VAL VAL ALA ILE SEQRES 2 D 126 ASP ALA LYS ARG VAL ASP GLY GLU PHE MET VAL PHE THR SEQRES 3 D 126 TYR SER GLY LYS LYS ASN THR GLY ILE LEU LEU ARG ASP SEQRES 4 D 126 TRP VAL VAL GLU VAL GLU LYS ARG GLY ALA GLY GLU ILE SEQRES 5 D 126 LEU LEU THR SER ILE ASP ARG ASP GLY THR LYS SER GLY SEQRES 6 D 126 TYR ASP THR GLU MET ILE ARG PHE VAL ARG PRO LEU THR SEQRES 7 D 126 THR LEU PRO ILE ILE ALA SER GLY GLY ALA GLY LYS MET SEQRES 8 D 126 GLU HIS PHE LEU GLU ALA PHE LEU ARG GLY ALA ASP LYS SEQRES 9 D 126 VAL SER ILE ASN THR ALA ALA VAL GLU ASN PRO SER LEU SEQRES 10 D 126 ILE THR GLN ILE ALA GLN THR PHE GLY HET PO4 A 122 5 HET PO4 B 122 5 HET PO4 C 122 5 HET PO4 D 122 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 4(O4 P 3-) FORMUL 9 HOH *66(H2 O) HELIX 1 1 LEU A 32 GLY A 43 1 12 HELIX 2 2 ASP A 62 ARG A 70 1 9 HELIX 3 3 PRO A 71 THR A 73 5 3 HELIX 4 4 LYS A 85 ARG A 95 1 11 HELIX 5 5 ASN A 103 ASN A 109 1 7 HELIX 6 6 PRO A 110 GLY A 121 1 12 HELIX 7 7 THR B 21 LYS B 26 1 6 HELIX 8 8 LEU B 31 ARG B 42 1 12 HELIX 9 9 ASP B 62 ARG B 70 1 9 HELIX 10 10 PRO B 71 THR B 73 5 3 HELIX 11 11 LYS B 85 ARG B 95 1 11 HELIX 12 12 ASN B 103 ASN B 109 1 7 HELIX 13 13 PRO B 110 GLN B 118 1 9 HELIX 14 14 LEU C 32 ARG C 42 1 11 HELIX 15 15 ASP C 62 ARG C 70 1 9 HELIX 16 16 PRO C 71 THR C 73 5 3 HELIX 17 17 LYS C 85 ARG C 95 1 11 HELIX 18 18 TYR D 22 LYS D 25 1 4 HELIX 19 19 LEU D 32 ARG D 42 1 11 HELIX 20 20 ASP D 62 ARG D 70 1 9 HELIX 21 21 PRO D 71 THR D 73 5 3 HELIX 22 22 LYS D 85 ARG D 95 1 11 HELIX 23 23 ASN D 103 ASN D 109 1 7 HELIX 24 24 PRO D 110 GLN D 118 1 9 SHEET 1 A 8 LYS A 26 LEU A 31 0 SHEET 2 A 8 GLU A 16 THR A 21 -1 N VAL A 19 O ILE A 30 SHEET 3 A 8 VAL A 4 VAL A 13 -1 N VAL A 13 O GLU A 16 SHEET 4 A 8 GLU A 46 SER A 51 1 O LEU A 48 N ILE A 8 SHEET 5 A 8 ILE A 77 SER A 80 1 O ILE A 78 N LEU A 49 SHEET 6 A 8 LYS A 99 ILE A 102 1 O SER A 101 N ALA A 79 SHEET 7 A 8 VAL B 4 LYS B 11 1 O VAL B 5 N VAL A 100 SHEET 8 A 8 MET B 18 VAL B 19 -1 O MET B 18 N LYS B 11 SHEET 1 B 8 LYS A 26 LEU A 31 0 SHEET 2 B 8 GLU A 16 THR A 21 -1 N VAL A 19 O ILE A 30 SHEET 3 B 8 VAL A 4 VAL A 13 -1 N VAL A 13 O GLU A 16 SHEET 4 B 8 LYS B 99 ILE B 102 1 O VAL B 100 N VAL A 5 SHEET 5 B 8 ILE B 77 SER B 80 1 N ALA B 79 O LYS B 99 SHEET 6 B 8 GLU B 46 SER B 51 1 N ILE B 47 O ILE B 78 SHEET 7 B 8 VAL B 4 LYS B 11 1 N ALA B 10 O THR B 50 SHEET 8 B 8 MET B 18 VAL B 19 -1 O MET B 18 N LYS B 11 SHEET 1 C 6 LYS C 26 LEU C 31 0 SHEET 2 C 6 GLU C 16 THR C 21 -1 N VAL C 19 O THR C 28 SHEET 3 C 6 VAL C 5 VAL C 13 -1 N LYS C 11 O MET C 18 SHEET 4 C 6 GLU C 46 SER C 51 1 O LEU C 48 N ILE C 8 SHEET 5 C 6 ILE C 77 SER C 80 1 O ILE C 78 N ILE C 47 SHEET 6 C 6 LYS C 99 VAL C 100 1 O LYS C 99 N ALA C 79 SHEET 1 D 6 LYS D 26 LEU D 31 0 SHEET 2 D 6 GLU D 16 THR D 21 -1 N VAL D 19 O ILE D 30 SHEET 3 D 6 VAL D 5 VAL D 13 -1 N VAL D 13 O GLU D 16 SHEET 4 D 6 GLU D 46 SER D 51 1 O GLU D 46 N VAL D 6 SHEET 5 D 6 ILE D 77 SER D 80 1 O ILE D 78 N LEU D 49 SHEET 6 D 6 LYS D 99 VAL D 100 1 O LYS D 99 N ILE D 77 CISPEP 1 GLU C 108 ASN C 109 0 2.61 SITE 1 AC1 8 ASP A 55 GLY A 56 GLY A 82 ASN A 103 SITE 2 AC1 8 THR A 104 HOH A 131 HOH A 142 HOH A 144 SITE 1 AC2 10 ASP B 55 GLY B 56 GLY B 81 GLY B 82 SITE 2 AC2 10 ASN B 103 THR B 104 HOH B 136 HOH B 139 SITE 3 AC2 10 HOH B 142 HOH B 143 SITE 1 AC3 4 GLY C 56 GLY C 81 GLY C 82 ALA C 83 SITE 1 AC4 7 GLY D 56 GLY D 82 ILE D 102 ASN D 103 SITE 2 AC4 7 THR D 104 HOH D 123 HOH D 128 CRYST1 60.493 60.493 140.200 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016531 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007133 0.00000