PDB Short entry for 3U11 HEADER TRANSPORT PROTEIN 29-SEP-11 3U11 TITLE TETRAMERIZATION DYNAMICS OF THE C-TERMINUS UNDERLIES ISOFORM-SPECIFIC TITLE 2 CAMP-GATING IN HCN CHANNELS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTASSIUM/SODIUM HYPERPOLARIZATION-ACTIVATED CYCLIC COMPND 3 NUCLEOTIDE-GATED CHANNEL 4; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 521-723); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HCN4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12 ROSETTA CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-24 MODIFIED WITH THE LIC CLONING SOURCE 11 CASSETTE KEYWDS TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.LOLICATO,M.NARDINI,S.GAZZARRINI,S.MOLLER,D.BERTINETTI,F.W.HERBERG, AUTHOR 2 M.BOLOGNESI,H.MARTIN,M.FASOLINI,J.A.BERTRAND,C.ARRIGONI,G.THIEL, AUTHOR 3 A.MORONI REVDAT 4 06-DEC-23 3U11 1 REMARK REVDAT 3 01-NOV-23 3U11 1 REMARK SEQADV LINK REVDAT 2 10-JUL-13 3U11 1 JRNL REVDAT 1 26-OCT-11 3U11 0 JRNL AUTH M.LOLICATO,M.NARDINI,S.GAZZARRINI,S.MOLLER,D.BERTINETTI, JRNL AUTH 2 F.W.HERBERG,M.BOLOGNESI,H.MARTIN,M.FASOLINI,J.A.BERTRAND, JRNL AUTH 3 C.ARRIGONI,G.THIEL,A.MORONI JRNL TITL TETRAMERIZATION DYNAMICS OF C-TERMINAL DOMAIN UNDERLIES JRNL TITL 2 ISOFORM-SPECIFIC CAMP GATING IN HYPERPOLARIZATION-ACTIVATED JRNL TITL 3 CYCLIC NUCLEOTIDE-GATED CHANNELS. JRNL REF J.BIOL.CHEM. V. 286 44811 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 22006928 JRNL DOI 10.1074/JBC.M111.297606 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 781 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1087 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.347 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.496 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.850 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3495 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4697 ; 1.746 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ;11.298 ; 5.098 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;30.727 ;22.637 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;20.164 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 489 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2636 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2005 ; 0.738 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3246 ; 1.445 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1490 ; 2.301 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1448 ; 3.822 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97238 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 62.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 10.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1Q43 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.4M SODIUM ACETATE REMARK 280 BUFFER, PH 5.0, 0.5M DIBASIC AMMONIUM PHOSPHATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -88.31000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -88.31000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -88.31000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -88.31000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 514 REMARK 465 GLY A 515 REMARK 465 PRO A 516 REMARK 465 SER A 517 REMARK 465 SER A 518 REMARK 465 PRO A 519 REMARK 465 MET A 520 REMARK 465 SER A 719 REMARK 465 ILE A 720 REMARK 465 LEU A 721 REMARK 465 LEU A 722 REMARK 465 HIS A 723 REMARK 465 GLN B 514 REMARK 465 GLY B 515 REMARK 465 PRO B 516 REMARK 465 SER B 517 REMARK 465 SER B 518 REMARK 465 PRO B 519 REMARK 465 MET B 520 REMARK 465 HIS B 723 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 654 122.89 -31.99 REMARK 500 GLU B 649 -130.69 52.92 REMARK 500 THR B 650 172.03 173.02 REMARK 500 ALA B 653 -155.82 -126.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 716 LYS A 717 146.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 846 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 724 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 725 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 726 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 727 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 728 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 846 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U0Z RELATED DB: PDB REMARK 900 HCN1 CNBD REMARK 900 RELATED ID: 3U10 RELATED DB: PDB REMARK 900 HCN2 CNBD REMARK 900 RELATED ID: 1Q43 RELATED DB: PDB REMARK 900 HCN2 CNBD REMARK 900 RELATED ID: 3OTF RELATED DB: PDB REMARK 900 HCN4 CNBD DBREF 3U11 A 521 723 UNP Q9Y3Q4 HCN4_HUMAN 521 723 DBREF 3U11 B 521 723 UNP Q9Y3Q4 HCN4_HUMAN 521 723 SEQADV 3U11 GLN A 514 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 GLY A 515 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 PRO A 516 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 SER A 517 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 SER A 518 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 PRO A 519 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 MET A 520 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 GLN B 514 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 GLY B 515 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 PRO B 516 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 SER B 517 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 SER B 518 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 PRO B 519 UNP Q9Y3Q4 EXPRESSION TAG SEQADV 3U11 MET B 520 UNP Q9Y3Q4 EXPRESSION TAG SEQRES 1 A 210 GLN GLY PRO SER SER PRO MET ASP SER SER ARG ARG GLN SEQRES 2 A 210 TYR GLN GLU LYS TYR LYS GLN VAL GLU GLN TYR MET SER SEQRES 3 A 210 PHE HIS LYS LEU PRO PRO ASP THR ARG GLN ARG ILE HIS SEQRES 4 A 210 ASP TYR TYR GLU HIS ARG TYR GLN GLY LYS MET PHE ASP SEQRES 5 A 210 GLU GLU SER ILE LEU GLY GLU LEU SER GLU PRO LEU ARG SEQRES 6 A 210 GLU GLU ILE ILE ASN PHE ASN CSO ARG LYS LEU VAL ALA SEQRES 7 A 210 SER MET PRO LEU PHE ALA ASN ALA ASP PRO ASN PHE VAL SEQRES 8 A 210 THR SER MET LEU THR LYS LEU ARG PHE GLU VAL PHE GLN SEQRES 9 A 210 PRO GLY ASP TYR ILE ILE ARG GLU GLY THR ILE GLY LYS SEQRES 10 A 210 LYS MET TYR PHE ILE GLN HIS GLY VAL VAL SER VAL LEU SEQRES 11 A 210 THR LYS GLY ASN LYS GLU THR LYS LEU ALA ASP GLY SER SEQRES 12 A 210 TYR PHE GLY GLU ILE CYS LEU LEU THR ARG GLY ARG ARG SEQRES 13 A 210 THR ALA SER VAL ARG ALA ASP THR TYR CYS ARG LEU TYR SEQRES 14 A 210 SER LEU SER VAL ASP ASN PHE ASN GLU VAL LEU GLU GLU SEQRES 15 A 210 TYR PRO MET MET ARG ARG ALA PHE GLU THR VAL ALA LEU SEQRES 16 A 210 ASP ARG LEU ASP ARG ILE GLY LYS LYS ASN SER ILE LEU SEQRES 17 A 210 LEU HIS SEQRES 1 B 210 GLN GLY PRO SER SER PRO MET ASP SER SER ARG ARG GLN SEQRES 2 B 210 TYR GLN GLU LYS TYR LYS GLN VAL GLU GLN TYR MET SER SEQRES 3 B 210 PHE HIS LYS LEU PRO PRO ASP THR ARG GLN ARG ILE HIS SEQRES 4 B 210 ASP TYR TYR GLU HIS ARG TYR GLN GLY LYS MET PHE ASP SEQRES 5 B 210 GLU GLU SER ILE LEU GLY GLU LEU SER GLU PRO LEU ARG SEQRES 6 B 210 GLU GLU ILE ILE ASN PHE ASN CSO ARG LYS LEU VAL ALA SEQRES 7 B 210 SER MET PRO LEU PHE ALA ASN ALA ASP PRO ASN PHE VAL SEQRES 8 B 210 THR SER MET LEU THR LYS LEU ARG PHE GLU VAL PHE GLN SEQRES 9 B 210 PRO GLY ASP TYR ILE ILE ARG GLU GLY THR ILE GLY LYS SEQRES 10 B 210 LYS MET TYR PHE ILE GLN HIS GLY VAL VAL SER VAL LEU SEQRES 11 B 210 THR LYS GLY ASN LYS GLU THR LYS LEU ALA ASP GLY SER SEQRES 12 B 210 TYR PHE GLY GLU ILE CYS LEU LEU THR ARG GLY ARG ARG SEQRES 13 B 210 THR ALA SER VAL ARG ALA ASP THR TYR CYS ARG LEU TYR SEQRES 14 B 210 SER LEU SER VAL ASP ASN PHE ASN GLU VAL LEU GLU GLU SEQRES 15 B 210 TYR PRO MET MET ARG ARG ALA PHE GLU THR VAL ALA LEU SEQRES 16 B 210 ASP ARG LEU ASP ARG ILE GLY LYS LYS ASN SER ILE LEU SEQRES 17 B 210 LEU HIS MODRES 3U11 CSO A 586 CYS S-HYDROXYCYSTEINE MODRES 3U11 CSO B 586 CYS S-HYDROXYCYSTEINE HET CSO A 586 7 HET CSO B 586 7 HET CMP A 846 22 HET GOL A 724 6 HET GOL A 725 6 HET GOL A 726 6 HET GOL A 727 6 HET GOL A 728 6 HET CMP B 846 22 HETNAM CSO S-HYDROXYCYSTEINE HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN CMP CYCLIC AMP; CAMP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 CMP 2(C10 H12 N5 O6 P) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 10 HOH *147(H2 O) HELIX 1 1 ASP A 521 HIS A 541 1 21 HELIX 2 2 PRO A 544 GLN A 560 1 17 HELIX 3 3 ASP A 565 GLU A 572 1 8 HELIX 4 4 SER A 574 CSO A 586 1 13 HELIX 5 5 CSO A 586 MET A 593 1 8 HELIX 6 6 MET A 593 ASN A 598 1 6 HELIX 7 7 ASP A 600 THR A 609 1 10 HELIX 8 8 GLY A 659 ARG A 666 1 8 HELIX 9 9 VAL A 686 TYR A 696 1 11 HELIX 10 10 MET A 699 ILE A 714 1 16 HELIX 11 11 SER B 522 HIS B 541 1 20 HELIX 12 12 PRO B 544 GLN B 560 1 17 HELIX 13 13 ASP B 565 LEU B 573 1 9 HELIX 14 14 SER B 574 CSO B 586 1 13 HELIX 15 15 CSO B 586 MET B 593 1 8 HELIX 16 16 ASP B 600 LYS B 610 1 11 HELIX 17 17 GLY B 659 ARG B 666 1 8 HELIX 18 18 VAL B 686 TYR B 696 1 11 HELIX 19 19 MET B 698 GLY B 715 1 18 SHEET 1 A 4 ARG A 612 PHE A 616 0 SHEET 2 A 4 CYS A 679 SER A 685 -1 O SER A 683 N ARG A 612 SHEET 3 A 4 LYS A 631 HIS A 637 -1 N HIS A 637 O ARG A 680 SHEET 4 A 4 TYR A 657 PHE A 658 -1 O PHE A 658 N TYR A 633 SHEET 1 B 4 TYR A 621 ILE A 623 0 SHEET 2 B 4 SER A 672 ALA A 675 -1 O VAL A 673 N ILE A 622 SHEET 3 B 4 VAL A 639 THR A 644 -1 N LEU A 643 O SER A 672 SHEET 4 B 4 ASN A 647 ALA A 653 -1 O LEU A 652 N VAL A 640 SHEET 1 C 4 ARG B 612 PHE B 616 0 SHEET 2 C 4 CYS B 679 SER B 685 -1 O LEU B 681 N GLU B 614 SHEET 3 C 4 LYS B 631 HIS B 637 -1 N MET B 632 O LEU B 684 SHEET 4 C 4 TYR B 657 PHE B 658 -1 O PHE B 658 N TYR B 633 SHEET 1 D 4 TYR B 621 ILE B 623 0 SHEET 2 D 4 SER B 672 ALA B 675 -1 O VAL B 673 N ILE B 623 SHEET 3 D 4 VAL B 640 THR B 644 -1 N LEU B 643 O SER B 672 SHEET 4 D 4 ASN B 647 LEU B 652 -1 O THR B 650 N VAL B 642 LINK C ASN A 585 N CSO A 586 1555 1555 1.34 LINK C CSO A 586 N ARG A 587 1555 1555 1.32 LINK C ASN B 585 N CSO B 586 1555 1555 1.33 LINK C CSO B 586 N ARG B 587 1555 1555 1.33 SITE 1 AC1 12 GLU A 649 THR A 650 PHE A 658 GLY A 659 SITE 2 AC1 12 GLU A 660 ILE A 661 CYS A 662 ARG A 669 SITE 3 AC1 12 THR A 670 ALA A 671 ARG A 710 ARG A 713 SITE 1 AC2 8 LEU A 543 PRO A 544 PRO A 545 ARG A 548 SITE 2 AC2 8 PRO B 594 LEU B 595 ALA B 599 ASP B 600 SITE 1 AC3 1 LYS A 651 SITE 1 AC4 6 ASN A 583 PHE A 596 ALA A 599 PRO A 601 SITE 2 AC4 6 VAL A 604 THR A 605 SITE 1 AC5 4 HOH A 149 HOH A 157 GLU A 625 GLY A 626 SITE 1 AC6 5 LEU A 652 SER A 656 ASP A 709 ARG A 710 SITE 2 AC6 5 ARG A 713 SITE 1 AC7 12 VAL B 642 THR B 650 PHE B 658 GLY B 659 SITE 2 AC7 12 GLU B 660 ILE B 661 CYS B 662 ARG B 669 SITE 3 AC7 12 THR B 670 ALA B 671 ARG B 710 ILE B 714 CRYST1 88.310 88.310 57.840 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017289 0.00000